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NDB ID: 2LI4  PDB ID: 2LI4 

RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
2LI4|1|A|A|102LI4|1|A|A|100BPh
2LI4|1|A|A|102LI4|1|A|A|9s53
2LI4|1|A|A|102LI4|1|A|G|11s35
2LI4|1|A|A|102LI4|1|A|U|23cWW
2LI4|1|A|A|102LI4|1|A|U|24ns55
2LI4|1|A|A|142LI4|1|A|A|140BPh
2LI4|1|A|A|142LI4|1|A|G|15s35
2LI4|1|A|A|142LI4|1|A|G|20s55
2LI4|1|A|A|142LI4|1|A|U|13ns53
2LI4|1|A|A|142LI4|1|A|U|19cWW
2LI4|1|A|A|162LI4|1|A|A|17s35
2LI4|1|A|A|172LI4|1|A|A|16s53
2LI4|1|A|A|172LI4|1|A|A|17n0BP
2LI4|1|A|A|172LI4|1|A|A|18s35
2LI4|1|A|A|182LI4|1|A|A|17s53
2LI4|1|A|A|182LI4|1|A|A|180BPh
2LI4|1|A|A|182LI4|1|A|G|15s55
2LI4|1|A|A|182LI4|1|A|U|19s35
2LI4|1|A|A|252LI4|1|A|A|250BPh
2LI4|1|A|A|252LI4|1|A|A|7ns33
2LI4|1|A|A|252LI4|1|A|A|9s55
2LI4|1|A|A|252LI4|1|A|U|24s53
2LI4|1|A|A|252LI4|1|A|U|26s35
2LI4|1|A|A|252LI4|1|A|U|8cWW
2LI4|1|A|A|32LI4|1|A|A|30BPh
2LI4|1|A|A|32LI4|1|A|C|4ns35
2LI4|1|A|A|32LI4|1|A|U|30cWW
2LI4|1|A|A|72LI4|1|A|A|25ns33
2LI4|1|A|A|72LI4|1|A|A|70BPh
2LI4|1|A|A|72LI4|1|A|C|27s55
2LI4|1|A|A|72LI4|1|A|G|6s53
2LI4|1|A|A|72LI4|1|A|U|26cWW
2LI4|1|A|A|72LI4|1|A|U|8s35
2LI4|1|A|A|92LI4|1|A|A|10s35
2LI4|1|A|A|92LI4|1|A|A|25s55
2LI4|1|A|A|92LI4|1|A|A|90BPh
2LI4|1|A|A|92LI4|1|A|U|24cWW
2LI4|1|A|A|92LI4|1|A|U|8s53
2LI4|1|A|C|212LI4|1|A|C|210BPh
2LI4|1|A|C|212LI4|1|A|C|22s35
2LI4|1|A|C|212LI4|1|A|G|12cWW
2LI4|1|A|C|212LI4|1|A|G|20s53
2LI4|1|A|C|222LI4|1|A|C|21s53
2LI4|1|A|C|222LI4|1|A|C|220BPh
2LI4|1|A|C|222LI4|1|A|G|11cWW
2LI4|1|A|C|222LI4|1|A|G|12s55
2LI4|1|A|C|222LI4|1|A|U|23s35
2LI4|1|A|C|272LI4|1|A|A|7s55
2LI4|1|A|C|272LI4|1|A|C|270BPh
2LI4|1|A|C|272LI4|1|A|G|28ns35
2LI4|1|A|C|272LI4|1|A|G|6cWW
2LI4|1|A|C|272LI4|1|A|U|26s53
2LI4|1|A|C|312LI4|1|A|C|310BPh
2LI4|1|A|C|312LI4|1|A|C|32s35
2LI4|1|A|C|312LI4|1|A|G|2cWW
2LI4|1|A|C|312LI4|1|A|U|30ns53
2LI4|1|A|C|322LI4|1|A|C|31s53
2LI4|1|A|C|322LI4|1|A|C|320BPh
2LI4|1|A|C|322LI4|1|A|G|1cWW
2LI4|1|A|C|322LI4|1|A|G|2s55
2LI4|1|A|C|42LI4|1|A|A|3ns53
2LI4|1|A|C|42LI4|1|A|C|40BPh
2LI4|1|A|C|42LI4|1|A|C|5s35
2LI4|1|A|C|42LI4|1|A|G|29cWW
2LI4|1|A|C|52LI4|1|A|C|4s53
2LI4|1|A|C|52LI4|1|A|C|50BPh
2LI4|1|A|C|52LI4|1|A|G|28cWW
2LI4|1|A|C|52LI4|1|A|G|29s55
2LI4|1|A|C|52LI4|1|A|G|6s35
2LI4|1|A|G|12LI4|1|A|C|32cWW
2LI4|1|A|G|12LI4|1|A|G|10BPh
2LI4|1|A|G|12LI4|1|A|G|2s35
2LI4|1|A|G|112LI4|1|A|A|10s53
2LI4|1|A|G|112LI4|1|A|C|22cWW
2LI4|1|A|G|112LI4|1|A|G|110BPh
2LI4|1|A|G|112LI4|1|A|G|12ns35
2LI4|1|A|G|112LI4|1|A|U|23s55
2LI4|1|A|G|122LI4|1|A|C|21cWW
2LI4|1|A|G|122LI4|1|A|C|22s55
2LI4|1|A|G|122LI4|1|A|G|11ns53
2LI4|1|A|G|122LI4|1|A|G|120BPh
2LI4|1|A|G|122LI4|1|A|U|13s35
2LI4|1|A|G|152LI4|1|A|A|14s53
2LI4|1|A|G|152LI4|1|A|A|18s55n5BP
2LI4|1|A|G|152LI4|1|A|G|150BPh
2LI4|1|A|G|22LI4|1|A|C|31cWW
2LI4|1|A|G|22LI4|1|A|C|32s55
2LI4|1|A|G|22LI4|1|A|G|1s53
2LI4|1|A|G|22LI4|1|A|G|20BPh
2LI4|1|A|G|202LI4|1|A|A|14s55
2LI4|1|A|G|202LI4|1|A|C|21s35
2LI4|1|A|G|202LI4|1|A|G|200BPh
2LI4|1|A|G|202LI4|1|A|U|13cWW
2LI4|1|A|G|202LI4|1|A|U|19s53
2LI4|1|A|G|282LI4|1|A|C|27ns53
2LI4|1|A|G|282LI4|1|A|C|5cWW
2LI4|1|A|G|282LI4|1|A|G|280BPh
2LI4|1|A|G|282LI4|1|A|G|29s35
2LI4|1|A|G|282LI4|1|A|G|6s55
2LI4|1|A|G|292LI4|1|A|C|4cWW
2LI4|1|A|G|292LI4|1|A|C|5s55
2LI4|1|A|G|292LI4|1|A|G|28s53
2LI4|1|A|G|292LI4|1|A|G|290BPh
2LI4|1|A|G|62LI4|1|A|A|7s35
2LI4|1|A|G|62LI4|1|A|C|27cWW
2LI4|1|A|G|62LI4|1|A|C|5s53
2LI4|1|A|G|62LI4|1|A|G|28s55
2LI4|1|A|G|62LI4|1|A|G|60BPh
2LI4|1|A|U|132LI4|1|A|A|14ns35
2LI4|1|A|U|132LI4|1|A|G|12s53
2LI4|1|A|U|132LI4|1|A|G|20cWW
2LI4|1|A|U|132LI4|1|A|U|130BPh
2LI4|1|A|U|192LI4|1|A|A|14cWW
2LI4|1|A|U|192LI4|1|A|A|18s53
2LI4|1|A|U|192LI4|1|A|G|20s35
2LI4|1|A|U|192LI4|1|A|U|190BPh
2LI4|1|A|U|232LI4|1|A|A|10cWW
2LI4|1|A|U|232LI4|1|A|C|22s53
2LI4|1|A|U|232LI4|1|A|G|11s55
2LI4|1|A|U|232LI4|1|A|U|230BPh
2LI4|1|A|U|232LI4|1|A|U|24s35
2LI4|1|A|U|242LI4|1|A|A|10ns55
2LI4|1|A|U|242LI4|1|A|A|25s35
2LI4|1|A|U|242LI4|1|A|A|9cWW
2LI4|1|A|U|242LI4|1|A|U|23s53
2LI4|1|A|U|242LI4|1|A|U|240BPh
2LI4|1|A|U|262LI4|1|A|A|25s53
2LI4|1|A|U|262LI4|1|A|A|7cWW
2LI4|1|A|U|262LI4|1|A|C|27s35
2LI4|1|A|U|262LI4|1|A|U|260BPh
2LI4|1|A|U|302LI4|1|A|A|3cWW
2LI4|1|A|U|302LI4|1|A|C|31ns35
2LI4|1|A|U|302LI4|1|A|U|300BPh
2LI4|1|A|U|82LI4|1|A|A|25cWW
2LI4|1|A|U|82LI4|1|A|A|7s53
2LI4|1|A|U|82LI4|1|A|A|9s35
2LI4|1|A|U|82LI4|1|A|U|80BPh


Base-PairsCount (14)Relative Frequency
cWW141.000
Base-PhosphateCount (30)Relative Frequency
0BPh301.000
Base-StackingCount (16)Relative Frequency
s5370.438
s5590.562

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)

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