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NDB ID: PR0244  PDB ID: 2NRE 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
2NRE|1|F|A|142NRE|1|F|A|15s35
2NRE|1|F|A|142NRE|1|F|A|20|||AcWS
2NRE|1|F|A|142NRE|1|F|A|22s55
2NRE|1|F|A|142NRE|1|F|G|13ns53
2NRE|1|F|A|142NRE|1|F|G|21ntHS
2NRE|1|F|A|14||||5_5552NRE|1|F|A|15||||5_555s35
2NRE|1|F|A|14||||5_5552NRE|1|F|A|20|||A|5_555cWS
2NRE|1|F|A|14||||5_5552NRE|1|F|A|22||||5_555s55
2NRE|1|F|A|14||||5_5552NRE|1|F|G|13||||5_555ns53
2NRE|1|F|A|14||||5_5552NRE|1|F|G|21||||5_555ntHS
2NRE|1|F|A|152NRE|1|F|A|14s53
2NRE|1|F|A|152NRE|1|F|A|150BPh
2NRE|1|F|A|152NRE|1|F|A|20|||AncSS
2NRE|1|F|A|152NRE|1|F|G|59s35
2NRE|1|F|A|152NRE|1|F|U|48ntWW
2NRE|1|F|A|152NRE|1|F|U|8ns55
2NRE|1|F|A|15||||5_5552NRE|1|F|A|14||||5_555s53
2NRE|1|F|A|15||||5_5552NRE|1|F|A|15||||5_5550BPh
2NRE|1|F|A|15||||5_5552NRE|1|F|A|20|||A|5_555ncSS
2NRE|1|F|A|15||||5_5552NRE|1|F|G|59||||5_555s35
2NRE|1|F|A|15||||5_5552NRE|1|F|U|48||||5_555ntWW
2NRE|1|F|A|15||||5_5552NRE|1|F|U|8||||5_555ns55
2NRE|1|F|A|20|||A2NRE|1|F|A|14cSW
2NRE|1|F|A|20|||A2NRE|1|F|A|15ncSS
2NRE|1|F|A|20|||A2NRE|1|F|A|20|||An0BP
2NRE|1|F|A|20|||A2NRE|1|F|G|21s35
2NRE|1|F|A|20|||A2NRE|1|F|U|48s55n6BP
2NRE|1|F|A|20|||A2NRE|1|F|U|8tSS
2NRE|1|F|A|20|||A|5_5552NRE|1|F|A|14||||5_555cSW
2NRE|1|F|A|20|||A|5_5552NRE|1|F|A|15||||5_555ncSS
2NRE|1|F|A|20|||A|5_5552NRE|1|F|A|20|||A|5_555n0BP
2NRE|1|F|A|20|||A|5_5552NRE|1|F|G|21||||5_555s35
2NRE|1|F|A|20|||A|5_5552NRE|1|F|U|48||||5_555s55n6BP
2NRE|1|F|A|20|||A|5_5552NRE|1|F|U|8||||5_555tSS
2NRE|1|F|A|222NRE|1|F|A|14s55
2NRE|1|F|A|222NRE|1|F|A|220BPh
2NRE|1|F|A|222NRE|1|F|C|23s35
2NRE|1|F|A|222NRE|1|F|G|13tHS
2NRE|1|F|A|22||||5_5552NRE|1|F|A|14||||5_555s55
2NRE|1|F|A|22||||5_5552NRE|1|F|A|22||||5_5550BPh
2NRE|1|F|A|22||||5_5552NRE|1|F|C|23||||5_555s35
2NRE|1|F|A|22||||5_5552NRE|1|F|G|13||||5_555tHS
2NRE|1|F|A|242NRE|1|F|A|240BPh
2NRE|1|F|A|242NRE|1|F|C|23s53
2NRE|1|F|A|242NRE|1|F|C|25s35
2NRE|1|F|A|242NRE|1|F|G|12s55
2NRE|1|F|A|242NRE|1|F|U|11cWW
2NRE|1|F|A|24||||5_5552NRE|1|F|A|24||||5_5550BPh
2NRE|1|F|A|24||||5_5552NRE|1|F|C|23||||5_555s53
2NRE|1|F|A|24||||5_5552NRE|1|F|C|25||||5_555s35
2NRE|1|F|A|24||||5_5552NRE|1|F|G|12||||5_555s55
2NRE|1|F|A|24||||5_5552NRE|1|F|U|11||||5_555cWW
2NRE|1|F|A|292NRE|1|F|A|29n0BP
2NRE|1|F|A|292NRE|1|F|A|42s55
2NRE|1|F|A|292NRE|1|F|C|30s35
2NRE|1|F|A|292NRE|1|F|G|40ns33
2NRE|1|F|A|292NRE|1|F|U|28s53
2NRE|1|F|A|292NRE|1|F|U|41cWW
2NRE|1|F|A|29||||5_5552NRE|1|F|A|29||||5_555n0BP
2NRE|1|F|A|29||||5_5552NRE|1|F|A|42||||5_555s55
2NRE|1|F|A|29||||5_5552NRE|1|F|C|30||||5_555s35
2NRE|1|F|A|29||||5_5552NRE|1|F|G|40||||5_555ns33
2NRE|1|F|A|29||||5_5552NRE|1|F|U|28||||5_555s53
2NRE|1|F|A|29||||5_5552NRE|1|F|U|41||||5_555cWW
2NRE|1|F|A|422NRE|1|F|A|29s55
2NRE|1|F|A|422NRE|1|F|A|420BPh
2NRE|1|F|A|422NRE|1|F|G|43s35
2NRE|1|F|A|422NRE|1|F|U|28cWW
2NRE|1|F|A|422NRE|1|F|U|41s53
2NRE|1|F|A|42||||5_5552NRE|1|F|A|29||||5_555s55
2NRE|1|F|A|42||||5_5552NRE|1|F|A|42||||5_5550BPh
2NRE|1|F|A|42||||5_5552NRE|1|F|G|43||||5_555s35
2NRE|1|F|A|42||||5_5552NRE|1|F|U|28||||5_555cWW
2NRE|1|F|A|42||||5_5552NRE|1|F|U|41||||5_555s53
2NRE|1|F|A|492NRE|1|F|A|49n0BP
2NRE|1|F|A|492NRE|1|F|C|50s35
2NRE|1|F|A|492NRE|1|F|C|66s55
2NRE|1|F|A|492NRE|1|F|G|7s53
2NRE|1|F|A|492NRE|1|F|U|65cWW
2NRE|1|F|A|49||||5_5552NRE|1|F|A|49||||5_555n0BP
2NRE|1|F|A|49||||5_5552NRE|1|F|C|50||||5_555s35
2NRE|1|F|A|49||||5_5552NRE|1|F|C|66||||5_555s55
2NRE|1|F|A|49||||5_5552NRE|1|F|G|7||||5_555s53
2NRE|1|F|A|49||||5_5552NRE|1|F|U|65||||5_555cWW
2NRE|1|F|A|52NRE|1|F|A|50BPh
2NRE|1|F|A|52NRE|1|F|G|6s35
2NRE|1|F|A|52NRE|1|F|U|68cWW
2NRE|1|F|A|572NRE|1|F|A|570BPh
2NRE|1|F|A|572NRE|1|F|C|56ns53
2NRE|1|F|A|572NRE|1|F|G|18s33
2NRE|1|F|A|572NRE|1|F|G|19s55
2NRE|1|F|A|572NRE|1|F|U|55ns33
2NRE|1|F|A|57||||5_5552NRE|1|F|A|57||||5_5550BPh
2NRE|1|F|A|57||||5_5552NRE|1|F|C|56||||5_555ns53
2NRE|1|F|A|57||||5_5552NRE|1|F|G|18||||5_555s33
2NRE|1|F|A|57||||5_5552NRE|1|F|G|19||||5_555s55
2NRE|1|F|A|57||||5_5552NRE|1|F|U|55||||5_555ns33
2NRE|1|F|A|582NRE|1|F|A|58n0BP
2NRE|1|F|A|582NRE|1|F|C|61s35
2NRE|1|F|A|582NRE|1|F|G|18s55
2NRE|1|F|A|582NRE|1|F|U|54tHW
2NRE|1|F|A|582NRE|1|F|U|55ns55
2NRE|1|F|A|58||||5_5552NRE|1|F|A|58||||5_555n0BP
2NRE|1|F|A|58||||5_5552NRE|1|F|C|61||||5_555s35
2NRE|1|F|A|58||||5_5552NRE|1|F|G|18||||5_555s55
2NRE|1|F|A|58||||5_5552NRE|1|F|U|54||||5_555tHW
2NRE|1|F|A|58||||5_5552NRE|1|F|U|55||||5_555ns55
2NRE|1|F|A|5||||5_5552NRE|1|F|A|5||||5_5550BPh
2NRE|1|F|A|5||||5_5552NRE|1|F|G|6||||5_555s35
2NRE|1|F|A|5||||5_5552NRE|1|F|U|68||||5_555cWW
2NRE|1|F|C|232NRE|1|F|A|22s538BPh
2NRE|1|F|C|232NRE|1|F|A|24s35
2NRE|1|F|C|232NRE|1|F|C|230BPh
2NRE|1|F|C|232NRE|1|F|G|12cWW
2NRE|1|F|C|23||||5_5552NRE|1|F|A|22||||5_555s538BPh
2NRE|1|F|C|23||||5_5552NRE|1|F|A|24||||5_555s35
2NRE|1|F|C|23||||5_5552NRE|1|F|C|23||||5_5550BPh
2NRE|1|F|C|23||||5_5552NRE|1|F|G|12||||5_555cWW
2NRE|1|F|C|252NRE|1|F|A|24s53
2NRE|1|F|C|252NRE|1|F|G|10cWW
2NRE|1|F|C|252NRE|1|F|G|26ns35
2NRE|1|F|C|25||||5_5552NRE|1|F|A|24||||5_555s53
2NRE|1|F|C|25||||5_5552NRE|1|F|G|10||||5_555cWW
2NRE|1|F|C|25||||5_5552NRE|1|F|G|26||||5_555ns35
2NRE|1|F|C|272NRE|1|F|C|270BPh
2NRE|1|F|C|272NRE|1|F|G|26s53
2NRE|1|F|C|272NRE|1|F|G|43cWW
2NRE|1|F|C|272NRE|1|F|U|28ns35
2NRE|1|F|C|27||||5_5552NRE|1|F|C|27||||5_5550BPh
2NRE|1|F|C|27||||5_5552NRE|1|F|G|26||||5_555s53
2NRE|1|F|C|27||||5_5552NRE|1|F|G|43||||5_555cWW
2NRE|1|F|C|27||||5_5552NRE|1|F|U|28||||5_555ns35
2NRE|1|F|C|302NRE|1|F|A|29s53
2NRE|1|F|C|302NRE|1|F|C|30n0BP
2NRE|1|F|C|302NRE|1|F|G|40cWW
2NRE|1|F|C|30||||5_5552NRE|1|F|A|29||||5_555s53
2NRE|1|F|C|30||||5_5552NRE|1|F|C|30||||5_555n0BP
2NRE|1|F|C|30||||5_5552NRE|1|F|G|40||||5_555cWW
2NRE|1|F|C|312NRE|1|F|C|310BPh
2NRE|1|F|C|312NRE|1|F|G|39ncWW
2NRE|1|F|C|31||||5_5552NRE|1|F|C|31||||5_5550BPh
2NRE|1|F|C|31||||5_5552NRE|1|F|G|39||||5_555ncWW
2NRE|1|F|C|502NRE|1|F|A|49s53
2NRE|1|F|C|502NRE|1|F|C|500BPh
2NRE|1|F|C|502NRE|1|F|G|51s35
2NRE|1|F|C|502NRE|1|F|G|64cWW
2NRE|1|F|C|50||||5_5552NRE|1|F|A|49||||5_555s53
2NRE|1|F|C|50||||5_5552NRE|1|F|C|50||||5_5550BPh
2NRE|1|F|C|50||||5_5552NRE|1|F|G|51||||5_555s35
2NRE|1|F|C|50||||5_5552NRE|1|F|G|64||||5_555cWW
2NRE|1|F|C|562NRE|1|F|A|57ns35
2NRE|1|F|C|562NRE|1|F|C|560BPh
2NRE|1|F|C|562NRE|1|F|G|19ncWW
2NRE|1|F|C|56||||5_5552NRE|1|F|A|57||||5_555ns35
2NRE|1|F|C|56||||5_5552NRE|1|F|C|56||||5_5550BPh
2NRE|1|F|C|56||||5_5552NRE|1|F|G|19||||5_555ncWW
2NRE|1|F|C|612NRE|1|F|A|58s53
2NRE|1|F|C|612NRE|1|F|C|610BPh
2NRE|1|F|C|612NRE|1|F|C|62s35
2NRE|1|F|C|612NRE|1|F|G|53cWW
2NRE|1|F|C|612NRE|1|F|U|609BPh
2NRE|1|F|C|61||||5_5552NRE|1|F|A|58||||5_555s53
2NRE|1|F|C|61||||5_5552NRE|1|F|C|61||||5_5550BPh
2NRE|1|F|C|61||||5_5552NRE|1|F|C|62||||5_555s35
2NRE|1|F|C|61||||5_5552NRE|1|F|G|53||||5_555cWW
2NRE|1|F|C|61||||5_5552NRE|1|F|U|60||||5_5559BPh
2NRE|1|F|C|622NRE|1|F|C|61s53
2NRE|1|F|C|622NRE|1|F|C|620BPh
2NRE|1|F|C|622NRE|1|F|C|63ns35
2NRE|1|F|C|622NRE|1|F|G|52cWW
2NRE|1|F|C|622NRE|1|F|G|53s55
2NRE|1|F|C|62||||5_5552NRE|1|F|C|61||||5_555s53
2NRE|1|F|C|62||||5_5552NRE|1|F|C|62||||5_5550BPh
2NRE|1|F|C|62||||5_5552NRE|1|F|C|63||||5_555ns35
2NRE|1|F|C|62||||5_5552NRE|1|F|G|52||||5_555cWW
2NRE|1|F|C|62||||5_5552NRE|1|F|G|53||||5_555s55
2NRE|1|F|C|632NRE|1|F|C|62ns53
2NRE|1|F|C|632NRE|1|F|C|63n0BP
2NRE|1|F|C|632NRE|1|F|G|51ncWW
2NRE|1|F|C|632NRE|1|F|G|52s55
2NRE|1|F|C|632NRE|1|F|G|64s35
2NRE|1|F|C|63||||5_5552NRE|1|F|C|62||||5_555ns53
2NRE|1|F|C|63||||5_5552NRE|1|F|C|63||||5_555n0BP
2NRE|1|F|C|63||||5_5552NRE|1|F|G|51||||5_555ncWW
2NRE|1|F|C|63||||5_5552NRE|1|F|G|52||||5_555s55
2NRE|1|F|C|63||||5_5552NRE|1|F|G|64||||5_555s35
2NRE|1|F|C|662NRE|1|F|A|49s55
2NRE|1|F|C|662NRE|1|F|C|660BPh
2NRE|1|F|C|662NRE|1|F|C|67s35
2NRE|1|F|C|662NRE|1|F|G|7cWW
2NRE|1|F|C|662NRE|1|F|U|65s53
2NRE|1|F|C|66||||5_5552NRE|1|F|A|49||||5_555s55
2NRE|1|F|C|66||||5_5552NRE|1|F|C|66||||5_5550BPh
2NRE|1|F|C|66||||5_5552NRE|1|F|C|67||||5_555s35
2NRE|1|F|C|66||||5_5552NRE|1|F|G|7||||5_555cWW
2NRE|1|F|C|66||||5_5552NRE|1|F|U|65||||5_555s53
2NRE|1|F|C|672NRE|1|F|C|66s53
2NRE|1|F|C|672NRE|1|F|C|670BPh
2NRE|1|F|C|672NRE|1|F|G|6cWW
2NRE|1|F|C|672NRE|1|F|G|7ns55
2NRE|1|F|C|672NRE|1|F|U|68s35
2NRE|1|F|C|67||||5_5552NRE|1|F|C|66||||5_555s53
2NRE|1|F|C|67||||5_5552NRE|1|F|C|67||||5_5550BPh
2NRE|1|F|C|67||||5_5552NRE|1|F|G|6||||5_555cWW
2NRE|1|F|C|67||||5_5552NRE|1|F|G|7||||5_555ns55
2NRE|1|F|C|67||||5_5552NRE|1|F|U|68||||5_555s35
2NRE|1|F|C|692NRE|1|F|C|69
2NRE|1|F|C|692NRE|1|F|U|68
2NRE|1|F|C|69||||5_5552NRE|1|F|C|69||||5_555
2NRE|1|F|C|69||||5_5552NRE|1|F|U|68||||5_555
2NRE|1|F|G|102NRE|1|F|C|25cWW
2NRE|1|F|G|102NRE|1|F|G|10n0BP
2NRE|1|F|G|102NRE|1|F|G|26s55
2NRE|1|F|G|102NRE|1|F|U|11s35
2NRE|1|F|G|102NRE|1|F|U|44ns53
2NRE|1|F|G|10||||5_5552NRE|1|F|C|25||||5_555cWW
2NRE|1|F|G|10||||5_5552NRE|1|F|G|10||||5_555n0BP
2NRE|1|F|G|10||||5_5552NRE|1|F|G|26||||5_555s55
2NRE|1|F|G|10||||5_5552NRE|1|F|U|11||||5_555s35
2NRE|1|F|G|10||||5_5552NRE|1|F|U|44||||5_555ns53
2NRE|1|F|G|122NRE|1|F|A|24s55
2NRE|1|F|G|122NRE|1|F|C|23cWW
2NRE|1|F|G|122NRE|1|F|G|12n0BP
2NRE|1|F|G|122NRE|1|F|G|13s35
2NRE|1|F|G|122NRE|1|F|U|11ns53
2NRE|1|F|G|12||||5_5552NRE|1|F|A|24||||5_555s55
2NRE|1|F|G|12||||5_5552NRE|1|F|C|23||||5_555cWW
2NRE|1|F|G|12||||5_5552NRE|1|F|G|12||||5_555n0BP
2NRE|1|F|G|12||||5_5552NRE|1|F|G|13||||5_555s35
2NRE|1|F|G|12||||5_5552NRE|1|F|U|11||||5_555ns53
2NRE|1|F|G|132NRE|1|F|A|14ns35
2NRE|1|F|G|132NRE|1|F|A|22tSH
2NRE|1|F|G|132NRE|1|F|G|12s53
2NRE|1|F|G|132NRE|1|F|G|130BPh
2NRE|1|F|G|132NRE|1|F|G|21ncWS
2NRE|1|F|G|132NRE|1|F|G|9s55
2NRE|1|F|G|132NRE|1|F|U|8ns33
2NRE|1|F|G|13||||5_5552NRE|1|F|A|14||||5_555ns35
2NRE|1|F|G|13||||5_5552NRE|1|F|A|22||||5_555tSH
2NRE|1|F|G|13||||5_5552NRE|1|F|G|12||||5_555s53
2NRE|1|F|G|13||||5_5552NRE|1|F|G|13||||5_5550BPh
2NRE|1|F|G|13||||5_5552NRE|1|F|G|21||||5_555ncWS
2NRE|1|F|G|13||||5_5552NRE|1|F|G|9||||5_555s55
2NRE|1|F|G|13||||5_5552NRE|1|F|U|8||||5_555ns33
2NRE|1|F|G|182NRE|1|F|A|57s33
2NRE|1|F|G|182NRE|1|F|A|58s55n3BP
2NRE|1|F|G|182NRE|1|F|U|55ntWS
2NRE|1|F|G|18||||5_5552NRE|1|F|A|57||||5_555s33
2NRE|1|F|G|18||||5_5552NRE|1|F|A|58||||5_555s55n3BP
2NRE|1|F|G|18||||5_5552NRE|1|F|U|55||||5_555ntWS
2NRE|1|F|G|192NRE|1|F|A|57s55
2NRE|1|F|G|192NRE|1|F|C|56ncWW
2NRE|1|F|G|192NRE|1|F|G|190BPh
2NRE|1|F|G|19||||5_5552NRE|1|F|A|57||||5_555s55
2NRE|1|F|G|19||||5_5552NRE|1|F|C|56||||5_555ncWW
2NRE|1|F|G|19||||5_5552NRE|1|F|G|19||||5_5550BPh
2NRE|1|F|G|212NRE|1|F|A|14ntSH
2NRE|1|F|G|212NRE|1|F|A|20|||As53
2NRE|1|F|G|212NRE|1|F|G|13ncSW
2NRE|1|F|G|212NRE|1|F|G|21n0BP
2NRE|1|F|G|212NRE|1|F|G|9n3BP
2NRE|1|F|G|21||||5_5552NRE|1|F|A|14||||5_555ntSH
2NRE|1|F|G|21||||5_5552NRE|1|F|A|20|||A|5_555s53
2NRE|1|F|G|21||||5_5552NRE|1|F|G|13||||5_555ncSW
2NRE|1|F|G|21||||5_5552NRE|1|F|G|21||||5_555n0BP
2NRE|1|F|G|21||||5_5552NRE|1|F|G|9||||5_555n3BP
2NRE|1|F|G|262NRE|1|F|C|25ns53
2NRE|1|F|G|262NRE|1|F|C|27s35
2NRE|1|F|G|262NRE|1|F|G|10s55
2NRE|1|F|G|262NRE|1|F|G|260BPh
2NRE|1|F|G|262NRE|1|F|U|44ncWS
2NRE|1|F|G|26||||5_5552NRE|1|F|C|25||||5_555ns53
2NRE|1|F|G|26||||5_5552NRE|1|F|C|27||||5_555s35
2NRE|1|F|G|26||||5_5552NRE|1|F|G|10||||5_555s55
2NRE|1|F|G|26||||5_5552NRE|1|F|G|26||||5_5550BPh
2NRE|1|F|G|26||||5_5552NRE|1|F|U|44||||5_555ncWS
2NRE|1|F|G|392NRE|1|F|C|31ncWW
2NRE|1|F|G|392NRE|1|F|G|40s35
2NRE|1|F|G|39||||5_5552NRE|1|F|C|31||||5_555ncWW
2NRE|1|F|G|39||||5_5552NRE|1|F|G|40||||5_555s35
2NRE|1|F|G|402NRE|1|F|A|29ns33
2NRE|1|F|G|402NRE|1|F|C|30cWW
2NRE|1|F|G|402NRE|1|F|G|39s53
2NRE|1|F|G|402NRE|1|F|U|41s35
2NRE|1|F|G|40||||5_5552NRE|1|F|A|29||||5_555ns33
2NRE|1|F|G|40||||5_5552NRE|1|F|C|30||||5_555cWW
2NRE|1|F|G|40||||5_5552NRE|1|F|G|39||||5_555s53
2NRE|1|F|G|40||||5_5552NRE|1|F|U|41||||5_555s35
2NRE|1|F|G|432NRE|1|F|A|42s53
2NRE|1|F|G|432NRE|1|F|C|27cWW
2NRE|1|F|G|432NRE|1|F|G|430BPh
2NRE|1|F|G|432NRE|1|F|U|28s55
2NRE|1|F|G|432NRE|1|F|U|44s35
2NRE|1|F|G|43||||5_5552NRE|1|F|A|42||||5_555s53
2NRE|1|F|G|43||||5_5552NRE|1|F|C|27||||5_555cWW
2NRE|1|F|G|43||||5_5552NRE|1|F|G|43||||5_5550BPh
2NRE|1|F|G|43||||5_5552NRE|1|F|U|28||||5_555s55
2NRE|1|F|G|43||||5_5552NRE|1|F|U|44||||5_555s35
2NRE|1|F|G|512NRE|1|F|C|50s53
2NRE|1|F|G|512NRE|1|F|C|63ncWW
2NRE|1|F|G|512NRE|1|F|G|510BPh
2NRE|1|F|G|512NRE|1|F|G|52s35
2NRE|1|F|G|512NRE|1|F|G|64s55
2NRE|1|F|G|51||||5_5552NRE|1|F|C|50||||5_555s53
2NRE|1|F|G|51||||5_5552NRE|1|F|C|63||||5_555ncWW
2NRE|1|F|G|51||||5_5552NRE|1|F|G|51||||5_5550BPh
2NRE|1|F|G|51||||5_5552NRE|1|F|G|52||||5_555s35
2NRE|1|F|G|51||||5_5552NRE|1|F|G|64||||5_555s55
2NRE|1|F|G|522NRE|1|F|C|62cWW
2NRE|1|F|G|522NRE|1|F|C|63s55
2NRE|1|F|G|522NRE|1|F|G|51s53
2NRE|1|F|G|522NRE|1|F|G|53s35
2NRE|1|F|G|52||||5_5552NRE|1|F|C|62||||5_555cWW
2NRE|1|F|G|52||||5_5552NRE|1|F|C|63||||5_555s55
2NRE|1|F|G|52||||5_5552NRE|1|F|G|51||||5_555s53
2NRE|1|F|G|52||||5_5552NRE|1|F|G|53||||5_555s35
2NRE|1|F|G|532NRE|1|F|C|61cWW
2NRE|1|F|G|532NRE|1|F|C|62s55
2NRE|1|F|G|532NRE|1|F|G|52s53
2NRE|1|F|G|532NRE|1|F|G|530BPh
2NRE|1|F|G|532NRE|1|F|U|54s35
2NRE|1|F|G|53||||5_5552NRE|1|F|C|61||||5_555cWW
2NRE|1|F|G|53||||5_5552NRE|1|F|C|62||||5_555s55
2NRE|1|F|G|53||||5_5552NRE|1|F|G|52||||5_555s53
2NRE|1|F|G|53||||5_5552NRE|1|F|G|53||||5_5550BPh
2NRE|1|F|G|53||||5_5552NRE|1|F|U|54||||5_555s35
2NRE|1|F|G|592NRE|1|F|A|15s53
2NRE|1|F|G|592NRE|1|F|G|59n0BP
2NRE|1|F|G|592NRE|1|F|U|48ns53
2NRE|1|F|G|592NRE|1|F|U|60s35
2NRE|1|F|G|59||||5_5552NRE|1|F|A|15||||5_555s53
2NRE|1|F|G|59||||5_5552NRE|1|F|G|59||||5_555n0BP
2NRE|1|F|G|59||||5_5552NRE|1|F|U|48||||5_555ns53
2NRE|1|F|G|59||||5_5552NRE|1|F|U|60||||5_555s35
2NRE|1|F|G|62NRE|1|F|A|5s53
2NRE|1|F|G|62NRE|1|F|C|67cWW
2NRE|1|F|G|62NRE|1|F|G|60BPh
2NRE|1|F|G|62NRE|1|F|G|7s35
2NRE|1|F|G|62NRE|1|F|U|68s55
2NRE|1|F|G|642NRE|1|F|C|50cWW
2NRE|1|F|G|642NRE|1|F|C|63s53
2NRE|1|F|G|642NRE|1|F|G|51s55
2NRE|1|F|G|642NRE|1|F|G|640BPh
2NRE|1|F|G|642NRE|1|F|U|65s35
2NRE|1|F|G|64||||5_5552NRE|1|F|C|50||||5_555cWW
2NRE|1|F|G|64||||5_5552NRE|1|F|C|63||||5_555s53
2NRE|1|F|G|64||||5_5552NRE|1|F|G|51||||5_555s55
2NRE|1|F|G|64||||5_5552NRE|1|F|G|64||||5_5550BPh
2NRE|1|F|G|64||||5_5552NRE|1|F|U|65||||5_555s35
2NRE|1|F|G|6||||5_5552NRE|1|F|A|5||||5_555s53
2NRE|1|F|G|6||||5_5552NRE|1|F|C|67||||5_555cWW
2NRE|1|F|G|6||||5_5552NRE|1|F|G|6||||5_5550BPh
2NRE|1|F|G|6||||5_5552NRE|1|F|G|7||||5_555s35
2NRE|1|F|G|6||||5_5552NRE|1|F|U|68||||5_555s55
2NRE|1|F|G|72NRE|1|F|A|49s35
2NRE|1|F|G|72NRE|1|F|C|66cWW
2NRE|1|F|G|72NRE|1|F|C|67ns55
2NRE|1|F|G|72NRE|1|F|G|6s53
2NRE|1|F|G|72NRE|1|F|G|70BPh
2NRE|1|F|G|7||||5_5552NRE|1|F|A|49||||5_555s35
2NRE|1|F|G|7||||5_5552NRE|1|F|C|66||||5_555cWW
2NRE|1|F|G|7||||5_5552NRE|1|F|C|67||||5_555ns55
2NRE|1|F|G|7||||5_5552NRE|1|F|G|6||||5_555s53
2NRE|1|F|G|7||||5_5552NRE|1|F|G|7||||5_5550BPh
2NRE|1|F|G|92NRE|1|F|A|22n3BP
2NRE|1|F|G|92NRE|1|F|G|13s55
2NRE|1|F|G|92NRE|1|F|G|90BPh
2NRE|1|F|G|92NRE|1|F|U|11n0BP
2NRE|1|F|G|9||||5_5552NRE|1|F|A|22||||5_555n3BP
2NRE|1|F|G|9||||5_5552NRE|1|F|G|13||||5_555s55
2NRE|1|F|G|9||||5_5552NRE|1|F|G|9||||5_5550BPh
2NRE|1|F|G|9||||5_5552NRE|1|F|U|11||||5_555n0BP
2NRE|1|F|U|112NRE|1|F|A|24cWW
2NRE|1|F|U|112NRE|1|F|G|10s53
2NRE|1|F|U|112NRE|1|F|G|12ns35
2NRE|1|F|U|112NRE|1|F|U|110BPh
2NRE|1|F|U|11||||5_5552NRE|1|F|A|24||||5_555cWW
2NRE|1|F|U|11||||5_5552NRE|1|F|G|10||||5_555s53
2NRE|1|F|U|11||||5_5552NRE|1|F|G|12||||5_555ns35
2NRE|1|F|U|11||||5_5552NRE|1|F|U|11||||5_5550BPh
2NRE|1|F|U|202NRE|1|F|A|20|||An0BP
2NRE|1|F|U|202NRE|1|F|U|200BPh
2NRE|1|F|U|20||||5_5552NRE|1|F|A|20|||A|5_555n0BP
2NRE|1|F|U|20||||5_5552NRE|1|F|U|20||||5_5550BPh
2NRE|1|F|U|282NRE|1|F|A|29s35
2NRE|1|F|U|282NRE|1|F|A|42cWW
2NRE|1|F|U|282NRE|1|F|C|27ns53
2NRE|1|F|U|282NRE|1|F|G|43s55
2NRE|1|F|U|282NRE|1|F|U|280BPh
2NRE|1|F|U|28||||5_5552NRE|1|F|A|29||||5_555s35
2NRE|1|F|U|28||||5_5552NRE|1|F|A|42||||5_555cWW
2NRE|1|F|U|28||||5_5552NRE|1|F|C|27||||5_555ns53
2NRE|1|F|U|28||||5_5552NRE|1|F|G|43||||5_555s55
2NRE|1|F|U|28||||5_5552NRE|1|F|U|28||||5_5550BPh
2NRE|1|F|U|412NRE|1|F|A|29cWW
2NRE|1|F|U|412NRE|1|F|A|42s35
2NRE|1|F|U|412NRE|1|F|G|40s53
2NRE|1|F|U|412NRE|1|F|U|410BPh
2NRE|1|F|U|41||||5_5552NRE|1|F|A|29||||5_555cWW
2NRE|1|F|U|41||||5_5552NRE|1|F|A|42||||5_555s35
2NRE|1|F|U|41||||5_5552NRE|1|F|G|40||||5_555s53
2NRE|1|F|U|41||||5_5552NRE|1|F|U|41||||5_5550BPh
2NRE|1|F|U|442NRE|1|F|G|10ns35
2NRE|1|F|U|442NRE|1|F|G|26ncSW
2NRE|1|F|U|442NRE|1|F|G|43s53
2NRE|1|F|U|442NRE|1|F|U|44n0BP
2NRE|1|F|U|44||||5_5552NRE|1|F|G|10||||5_555ns35
2NRE|1|F|U|44||||5_5552NRE|1|F|G|26||||5_555ncSW
2NRE|1|F|U|44||||5_5552NRE|1|F|G|43||||5_555s53
2NRE|1|F|U|44||||5_5552NRE|1|F|U|44||||5_555n0BP
2NRE|1|F|U|482NRE|1|F|A|15ntWW
2NRE|1|F|U|482NRE|1|F|A|20|||As55
2NRE|1|F|U|482NRE|1|F|G|59ns35n9BP
2NRE|1|F|U|48||||5_5552NRE|1|F|A|15||||5_555ntWW
2NRE|1|F|U|48||||5_5552NRE|1|F|A|20|||A|5_555s55
2NRE|1|F|U|48||||5_5552NRE|1|F|G|59||||5_555ns35n9BP
2NRE|1|F|U|542NRE|1|F|A|58tWH
2NRE|1|F|U|542NRE|1|F|G|53s53
2NRE|1|F|U|542NRE|1|F|U|540BPh
2NRE|1|F|U|542NRE|1|F|U|55s35
2NRE|1|F|U|54||||5_5552NRE|1|F|A|58||||5_555tWH
2NRE|1|F|U|54||||5_5552NRE|1|F|G|53||||5_555s53
2NRE|1|F|U|54||||5_5552NRE|1|F|U|54||||5_5550BPh
2NRE|1|F|U|54||||5_5552NRE|1|F|U|55||||5_555s35
2NRE|1|F|U|552NRE|1|F|A|57ns33
2NRE|1|F|U|552NRE|1|F|A|58ns555BPh
2NRE|1|F|U|552NRE|1|F|G|18ntSW
2NRE|1|F|U|552NRE|1|F|U|54s53
2NRE|1|F|U|552NRE|1|F|U|550BPh
2NRE|1|F|U|55||||5_5552NRE|1|F|A|57||||5_555ns33
2NRE|1|F|U|55||||5_5552NRE|1|F|A|58||||5_555ns555BPh
2NRE|1|F|U|55||||5_5552NRE|1|F|G|18||||5_555ntSW
2NRE|1|F|U|55||||5_5552NRE|1|F|U|54||||5_555s53
2NRE|1|F|U|55||||5_5552NRE|1|F|U|55||||5_5550BPh
2NRE|1|F|U|602NRE|1|F|A|58
2NRE|1|F|U|602NRE|1|F|G|195BPh
2NRE|1|F|U|602NRE|1|F|G|59s53n9BP
2NRE|1|F|U|602NRE|1|F|U|600BPh
2NRE|1|F|U|60||||5_5552NRE|1|F|A|58||||5_555
2NRE|1|F|U|60||||5_5552NRE|1|F|G|19||||5_5555BPh
2NRE|1|F|U|60||||5_5552NRE|1|F|G|59||||5_555s53n9BP
2NRE|1|F|U|60||||5_5552NRE|1|F|U|60||||5_5550BPh
2NRE|1|F|U|652NRE|1|F|A|49cWW
2NRE|1|F|U|652NRE|1|F|C|66s35
2NRE|1|F|U|652NRE|1|F|G|64s53
2NRE|1|F|U|652NRE|1|F|U|650BPh
2NRE|1|F|U|65||||5_5552NRE|1|F|A|49||||5_555cWW
2NRE|1|F|U|65||||5_5552NRE|1|F|C|66||||5_555s35
2NRE|1|F|U|65||||5_5552NRE|1|F|G|64||||5_555s53
2NRE|1|F|U|65||||5_5552NRE|1|F|U|65||||5_5550BPh
2NRE|1|F|U|682NRE|1|F|A|5cWW
2NRE|1|F|U|682NRE|1|F|C|67s53
2NRE|1|F|U|682NRE|1|F|C|69
2NRE|1|F|U|682NRE|1|F|G|6s55
2NRE|1|F|U|682NRE|1|F|U|68n0BP
2NRE|1|F|U|68||||5_5552NRE|1|F|A|5||||5_555cWW
2NRE|1|F|U|68||||5_5552NRE|1|F|C|67||||5_555s53
2NRE|1|F|U|68||||5_5552NRE|1|F|C|69||||5_555
2NRE|1|F|U|68||||5_5552NRE|1|F|G|6||||5_555s55
2NRE|1|F|U|68||||5_5552NRE|1|F|U|68||||5_555n0BP
2NRE|1|F|U|82NRE|1|F|A|15ns55
2NRE|1|F|U|82NRE|1|F|A|20|||AtSS
2NRE|1|F|U|82NRE|1|F|G|13ns33
2NRE|1|F|U|82NRE|1|F|U|80BPh
2NRE|1|F|U|8||||5_5552NRE|1|F|A|15||||5_555ns55
2NRE|1|F|U|8||||5_5552NRE|1|F|A|20|||A|5_555tSS
2NRE|1|F|U|8||||5_5552NRE|1|F|G|13||||5_555ns33
2NRE|1|F|U|8||||5_5552NRE|1|F|U|8||||5_5550BPh


Base-PairsCount (36)Relative Frequency
cWW280.778
tWH20.056
cWS20.056
tHS20.056
tSS20.056
Base-PhosphateCount (76)Relative Frequency
5BPh40.053
8BPh20.026
9BPh20.026
0BPh680.895
Base-StackingCount (42)Relative Frequency
s3320.048
s53120.286
s55280.667

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)