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As of 30-Nov-2022 number of released structures: 12490
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NDB ID: PR0240  PDB ID: 2NUF 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
2NUF|1|C|A|142NUF|1|C|A|140BPh
2NUF|1|C|A|142NUF|1|C|A|15s35
2NUF|1|C|A|142NUF|1|C|C|13s53
2NUF|1|C|A|142NUF|1|C|G|12ns33
2NUF|1|C|A|152NUF|1|C|A|14s53
2NUF|1|C|A|152NUF|1|C|A|150BPh
2NUF|1|C|A|152NUF|1|C|G|12tHS
2NUF|1|C|A|152NUF|1|C|G|16s35
2NUF|1|C|A|172NUF|1|C|A|170BPh
2NUF|1|C|A|172NUF|1|C|C|11s55
2NUF|1|C|A|172NUF|1|C|G|16s53
2NUF|1|C|A|172NUF|1|C|G|18s35
2NUF|1|C|A|172NUF|1|C|U|10cWW
2NUF|1|C|A|22NUF|1|C|A|3s35
2NUF|1|C|A|22NUF|1|C|C|1s53
2NUF|1|C|A|22NUF|1|C|G|26s55
2NUF|1|C|A|22NUF|1|C|U|25cWW
2NUF|1|C|A|32NUF|1|C|A|2s53
2NUF|1|C|A|32NUF|1|C|A|30BPh
2NUF|1|C|A|32NUF|1|C|G|4s35
2NUF|1|C|A|32NUF|1|C|U|24cWW
2NUF|1|C|A|32NUF|1|C|U|25s55
2NUF|1|C|A|82NUF|1|C|A|80BPh
2NUF|1|C|A|82NUF|1|C|C|7s53
2NUF|1|C|A|82NUF|1|C|G|20s55
2NUF|1|C|A|82NUF|1|C|U|19cWW
2NUF|1|C|A|82NUF|1|C|U|9s35
2NUF|1|C|C|12NUF|1|C|A|2s35
2NUF|1|C|C|12NUF|1|C|C|10BPh
2NUF|1|C|C|12NUF|1|C|G|26cWW
2NUF|1|C|C|12NUF|1|D|G|28s53
2NUF|1|C|C|112NUF|1|C|A|17s55
2NUF|1|C|C|112NUF|1|C|C|110BPh
2NUF|1|C|C|112NUF|1|C|G|12s35
2NUF|1|C|C|112NUF|1|C|G|16cWW
2NUF|1|C|C|112NUF|1|C|U|10s53
2NUF|1|C|C|132NUF|1|C|A|14s35
2NUF|1|C|C|132NUF|1|C|C|130BPh
2NUF|1|C|C|222NUF|1|C|C|220BPh
2NUF|1|C|C|222NUF|1|C|C|23s35
2NUF|1|C|C|222NUF|1|C|G|21s53
2NUF|1|C|C|222NUF|1|C|G|5cWW
2NUF|1|C|C|232NUF|1|C|C|22s53
2NUF|1|C|C|232NUF|1|C|C|230BPh
2NUF|1|C|C|232NUF|1|C|G|4cWW
2NUF|1|C|C|232NUF|1|C|G|5s55
2NUF|1|C|C|232NUF|1|C|U|24s35
2NUF|1|C|C|272NUF|1|C|C|270BPh
2NUF|1|C|C|272NUF|1|C|G|26s53
2NUF|1|C|C|272NUF|1|C|G|28s35
2NUF|1|C|C|272NUF|1|D|G|28cWW
2NUF|1|C|C|72NUF|1|C|A|8s35
2NUF|1|C|C|72NUF|1|C|C|70BPh
2NUF|1|C|C|72NUF|1|C|G|20cWW
2NUF|1|C|C|72NUF|1|C|G|21s55
2NUF|1|C|C|72NUF|1|C|U|6s53
2NUF|1|C|G|122NUF|1|C|A|14ns33
2NUF|1|C|G|122NUF|1|C|A|15tSH3BPh
2NUF|1|C|G|122NUF|1|C|C|11s53
2NUF|1|C|G|122NUF|1|C|G|120BPh
2NUF|1|C|G|122NUF|1|C|G|16s55
2NUF|1|C|G|162NUF|1|C|A|15s53
2NUF|1|C|G|162NUF|1|C|A|17s35
2NUF|1|C|G|162NUF|1|C|C|11cWW
2NUF|1|C|G|162NUF|1|C|G|12s55
2NUF|1|C|G|162NUF|1|C|G|160BPh
2NUF|1|C|G|182NUF|1|C|A|17s53
2NUF|1|C|G|182NUF|1|C|G|180BPh
2NUF|1|C|G|182NUF|1|C|U|10s55
2NUF|1|C|G|182NUF|1|C|U|19s35
2NUF|1|C|G|182NUF|1|C|U|9cWW
2NUF|1|C|G|202NUF|1|C|A|8s55
2NUF|1|C|G|202NUF|1|C|C|7cWW
2NUF|1|C|G|202NUF|1|C|G|200BPh
2NUF|1|C|G|202NUF|1|C|G|21s35
2NUF|1|C|G|202NUF|1|C|U|19s53
2NUF|1|C|G|212NUF|1|C|C|22s35
2NUF|1|C|G|212NUF|1|C|C|7s55
2NUF|1|C|G|212NUF|1|C|G|20s53
2NUF|1|C|G|212NUF|1|C|G|210BPh
2NUF|1|C|G|212NUF|1|C|U|6cWW
2NUF|1|C|G|262NUF|1|C|A|2s55
2NUF|1|C|G|262NUF|1|C|C|1cWW
2NUF|1|C|G|262NUF|1|C|C|27s35
2NUF|1|C|G|262NUF|1|C|G|260BPh
2NUF|1|C|G|262NUF|1|C|U|25s53
2NUF|1|C|G|282NUF|1|C|C|27s53
2NUF|1|C|G|282NUF|1|C|G|280BPh
2NUF|1|C|G|282NUF|1|D|C|1s35
2NUF|1|C|G|282NUF|1|D|C|27cWW
2NUF|1|C|G|282NUF|1|D|G|28s55
2NUF|1|C|G|42NUF|1|C|A|3s53
2NUF|1|C|G|42NUF|1|C|C|23cWW
2NUF|1|C|G|42NUF|1|C|G|40BPh
2NUF|1|C|G|42NUF|1|C|G|5s35
2NUF|1|C|G|42NUF|1|C|U|24s55
2NUF|1|C|G|52NUF|1|C|C|22cWW
2NUF|1|C|G|52NUF|1|C|C|23s55
2NUF|1|C|G|52NUF|1|C|G|4s53
2NUF|1|C|G|52NUF|1|C|G|50BPh
2NUF|1|C|G|52NUF|1|C|U|6s35
2NUF|1|C|U|102NUF|1|C|A|17cWW
2NUF|1|C|U|102NUF|1|C|C|11s35
2NUF|1|C|U|102NUF|1|C|G|18s55
2NUF|1|C|U|102NUF|1|C|U|100BPh
2NUF|1|C|U|102NUF|1|C|U|9s53
2NUF|1|C|U|192NUF|1|C|A|8cWW
2NUF|1|C|U|192NUF|1|C|G|18s53
2NUF|1|C|U|192NUF|1|C|G|20s35
2NUF|1|C|U|192NUF|1|C|U|190BPh
2NUF|1|C|U|242NUF|1|C|A|3cWW
2NUF|1|C|U|242NUF|1|C|C|23s53
2NUF|1|C|U|242NUF|1|C|G|4s55
2NUF|1|C|U|242NUF|1|C|U|240BPh
2NUF|1|C|U|242NUF|1|C|U|25s35
2NUF|1|C|U|252NUF|1|C|A|2cWW
2NUF|1|C|U|252NUF|1|C|A|3s55
2NUF|1|C|U|252NUF|1|C|G|26s35
2NUF|1|C|U|252NUF|1|C|U|24s53
2NUF|1|C|U|252NUF|1|C|U|250BPh
2NUF|1|C|U|62NUF|1|C|C|7s35
2NUF|1|C|U|62NUF|1|C|G|21cWW
2NUF|1|C|U|62NUF|1|C|G|5s53
2NUF|1|C|U|62NUF|1|C|U|60BPh
2NUF|1|C|U|92NUF|1|C|A|8s53
2NUF|1|C|U|92NUF|1|C|G|18cWW
2NUF|1|C|U|92NUF|1|C|U|10s35
2NUF|1|C|U|92NUF|1|C|U|90BPh
2NUF|1|D|A|142NUF|1|D|A|140BPh
2NUF|1|D|A|142NUF|1|D|A|15s35
2NUF|1|D|A|142NUF|1|D|C|13s53
2NUF|1|D|A|142NUF|1|D|G|12ns33
2NUF|1|D|A|152NUF|1|D|A|14s53
2NUF|1|D|A|152NUF|1|D|A|150BPh
2NUF|1|D|A|152NUF|1|D|G|12tHS
2NUF|1|D|A|152NUF|1|D|G|16s35
2NUF|1|D|A|172NUF|1|D|A|170BPh
2NUF|1|D|A|172NUF|1|D|C|11s55
2NUF|1|D|A|172NUF|1|D|G|16s53
2NUF|1|D|A|172NUF|1|D|G|18s35
2NUF|1|D|A|172NUF|1|D|U|10cWW
2NUF|1|D|A|22NUF|1|D|A|3s35
2NUF|1|D|A|22NUF|1|D|C|1s53
2NUF|1|D|A|22NUF|1|D|G|26s55
2NUF|1|D|A|22NUF|1|D|U|25cWW
2NUF|1|D|A|32NUF|1|D|A|2s53
2NUF|1|D|A|32NUF|1|D|A|30BPh
2NUF|1|D|A|32NUF|1|D|G|4s35
2NUF|1|D|A|32NUF|1|D|U|24cWW
2NUF|1|D|A|32NUF|1|D|U|25s55
2NUF|1|D|A|82NUF|1|D|A|80BPh
2NUF|1|D|A|82NUF|1|D|C|7s53
2NUF|1|D|A|82NUF|1|D|G|20s55
2NUF|1|D|A|82NUF|1|D|U|19cWW
2NUF|1|D|A|82NUF|1|D|U|9s35
2NUF|1|D|C|12NUF|1|C|G|28s53
2NUF|1|D|C|12NUF|1|D|A|2s35
2NUF|1|D|C|12NUF|1|D|C|10BPh
2NUF|1|D|C|12NUF|1|D|G|26cWW
2NUF|1|D|C|112NUF|1|D|A|17s55
2NUF|1|D|C|112NUF|1|D|C|110BPh
2NUF|1|D|C|112NUF|1|D|G|12s35
2NUF|1|D|C|112NUF|1|D|G|16cWW
2NUF|1|D|C|112NUF|1|D|U|10s53
2NUF|1|D|C|132NUF|1|D|A|14s35
2NUF|1|D|C|132NUF|1|D|C|130BPh
2NUF|1|D|C|222NUF|1|D|C|220BPh
2NUF|1|D|C|222NUF|1|D|C|23s35
2NUF|1|D|C|222NUF|1|D|G|21s53
2NUF|1|D|C|222NUF|1|D|G|5cWW
2NUF|1|D|C|232NUF|1|D|C|22s53
2NUF|1|D|C|232NUF|1|D|C|230BPh
2NUF|1|D|C|232NUF|1|D|G|4cWW
2NUF|1|D|C|232NUF|1|D|G|5s55
2NUF|1|D|C|232NUF|1|D|U|24s35
2NUF|1|D|C|272NUF|1|C|G|28cWW
2NUF|1|D|C|272NUF|1|D|C|270BPh
2NUF|1|D|C|272NUF|1|D|G|26s53
2NUF|1|D|C|272NUF|1|D|G|28s35
2NUF|1|D|C|72NUF|1|D|A|8s35
2NUF|1|D|C|72NUF|1|D|C|70BPh
2NUF|1|D|C|72NUF|1|D|G|20cWW
2NUF|1|D|C|72NUF|1|D|G|21s55
2NUF|1|D|C|72NUF|1|D|U|6s53
2NUF|1|D|G|122NUF|1|D|A|14ns33
2NUF|1|D|G|122NUF|1|D|A|15tSH3BPh
2NUF|1|D|G|122NUF|1|D|C|11s53
2NUF|1|D|G|122NUF|1|D|G|120BPh
2NUF|1|D|G|122NUF|1|D|G|16s55
2NUF|1|D|G|162NUF|1|D|A|15s53
2NUF|1|D|G|162NUF|1|D|A|17s35
2NUF|1|D|G|162NUF|1|D|C|11cWW
2NUF|1|D|G|162NUF|1|D|G|12s55
2NUF|1|D|G|162NUF|1|D|G|160BPh
2NUF|1|D|G|182NUF|1|D|A|17s53
2NUF|1|D|G|182NUF|1|D|G|180BPh
2NUF|1|D|G|182NUF|1|D|U|10s55
2NUF|1|D|G|182NUF|1|D|U|19s35
2NUF|1|D|G|182NUF|1|D|U|9cWW
2NUF|1|D|G|202NUF|1|D|A|8s55
2NUF|1|D|G|202NUF|1|D|C|7cWW
2NUF|1|D|G|202NUF|1|D|G|200BPh
2NUF|1|D|G|202NUF|1|D|G|21s35
2NUF|1|D|G|202NUF|1|D|U|19s53
2NUF|1|D|G|212NUF|1|D|C|22s35
2NUF|1|D|G|212NUF|1|D|C|7s55
2NUF|1|D|G|212NUF|1|D|G|20s53
2NUF|1|D|G|212NUF|1|D|G|210BPh
2NUF|1|D|G|212NUF|1|D|U|6cWW
2NUF|1|D|G|262NUF|1|D|A|2s55
2NUF|1|D|G|262NUF|1|D|C|1cWW
2NUF|1|D|G|262NUF|1|D|C|27s35
2NUF|1|D|G|262NUF|1|D|G|260BPh
2NUF|1|D|G|262NUF|1|D|U|25s53
2NUF|1|D|G|282NUF|1|C|C|1s35
2NUF|1|D|G|282NUF|1|C|C|27cWW
2NUF|1|D|G|282NUF|1|C|G|28s55
2NUF|1|D|G|282NUF|1|D|C|27s53
2NUF|1|D|G|282NUF|1|D|G|280BPh
2NUF|1|D|G|42NUF|1|D|A|3s53
2NUF|1|D|G|42NUF|1|D|C|23cWW
2NUF|1|D|G|42NUF|1|D|G|40BPh
2NUF|1|D|G|42NUF|1|D|G|5s35
2NUF|1|D|G|42NUF|1|D|U|24s55
2NUF|1|D|G|52NUF|1|D|C|22cWW
2NUF|1|D|G|52NUF|1|D|C|23s55
2NUF|1|D|G|52NUF|1|D|G|4s53
2NUF|1|D|G|52NUF|1|D|G|50BPh
2NUF|1|D|G|52NUF|1|D|U|6s35
2NUF|1|D|U|102NUF|1|D|A|17cWW
2NUF|1|D|U|102NUF|1|D|C|11s35
2NUF|1|D|U|102NUF|1|D|G|18s55
2NUF|1|D|U|102NUF|1|D|U|100BPh
2NUF|1|D|U|102NUF|1|D|U|9s53
2NUF|1|D|U|192NUF|1|D|A|8cWW
2NUF|1|D|U|192NUF|1|D|G|18s53
2NUF|1|D|U|192NUF|1|D|G|20s35
2NUF|1|D|U|192NUF|1|D|U|190BPh
2NUF|1|D|U|242NUF|1|D|A|3cWW
2NUF|1|D|U|242NUF|1|D|C|23s53
2NUF|1|D|U|242NUF|1|D|G|4s55
2NUF|1|D|U|242NUF|1|D|U|240BPh
2NUF|1|D|U|242NUF|1|D|U|25s35
2NUF|1|D|U|252NUF|1|D|A|2cWW
2NUF|1|D|U|252NUF|1|D|A|3s55
2NUF|1|D|U|252NUF|1|D|G|26s35
2NUF|1|D|U|252NUF|1|D|U|24s53
2NUF|1|D|U|252NUF|1|D|U|250BPh
2NUF|1|D|U|62NUF|1|D|C|7s35
2NUF|1|D|U|62NUF|1|D|G|21cWW
2NUF|1|D|U|62NUF|1|D|G|5s53
2NUF|1|D|U|62NUF|1|D|U|60BPh
2NUF|1|D|U|92NUF|1|D|A|8s53
2NUF|1|D|U|92NUF|1|D|G|18cWW
2NUF|1|D|U|92NUF|1|D|U|10s35
2NUF|1|D|U|92NUF|1|D|U|90BPh


Base-PairsCount (26)Relative Frequency
cWW240.923
tHS20.077
Base-PhosphateCount (56)Relative Frequency
3BPh20.036
0BPh540.964
Base-StackingCount (42)Relative Frequency
s53230.548
s55190.452

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)