NDB ID: DR0036 PDB ID: 2OE8 
RNA Base-Pairs, Stacking and other pairwise interactions
CSV FormatNucleotide 1 | Nucleotide 2 | Base-Pairs | Base-Stacking | Base-Phosphate |
---|
2OE8|1|A|A|14 | 2OE8|1|A|A|14 | | | 0BPh |
2OE8|1|A|A|14 | 2OE8|1|A|C|15 | | s35 | |
2OE8|1|A|A|14 | 2OE8|1|A|U|1413 | | s53 | |
2OE8|1|A|A|14 | 2OE8|1|B|A|1487 | | s55 | |
2OE8|1|A|A|14 | 2OE8|1|B|U|86 | cWW | | |
2OE8|1|A|A|1411 | 2OE8|1|A|A|1411 | | | 0BPh |
2OE8|1|A|A|1411 | 2OE8|1|A|G|1412 | | s35 | |
2OE8|1|A|A|1411 | 2OE8|1|A|U|1410 | | s53 | |
2OE8|1|A|A|1411 | 2OE8|1|B|A|1490 | | s55 | |
2OE8|1|A|A|1411 | 2OE8|1|B|U|1489 | cWW | | |
2OE8|1|A|C|1404 | 2OE8|1|A|C|1404 | | | 0BPh |
2OE8|1|A|C|1404 | 2OE8|1|A|G|1405 | | s35 | |
2OE8|1|A|C|1404 | 2OE8|1|A|G|3 | | s53 | |
2OE8|1|A|C|1404 | 2OE8|1|B|G|1497 | cWW | | |
2OE8|1|A|C|1407 | 2OE8|1|A|C|1407 | | | 0BPh |
2OE8|1|A|C|1407 | 2OE8|1|A|G|1408 | | s35 | |
2OE8|1|A|C|1407 | 2OE8|1|A|U|1406 | | s53 | |
2OE8|1|A|C|1407 | 2OE8|1|B|G|1494 | cWW | | |
2OE8|1|A|C|1409 | 2OE8|1|A|C|1409 | | | 0BPh |
2OE8|1|A|C|1409 | 2OE8|1|A|G|1408 | | s53 | |
2OE8|1|A|C|1409 | 2OE8|1|A|U|1410 | | s35 | |
2OE8|1|A|C|1409 | 2OE8|1|B|A|1492 | cWS | | |
2OE8|1|A|C|15 | 2OE8|1|A|A|14 | | s53 | |
2OE8|1|A|C|15 | 2OE8|1|A|C|15 | | | 0BPh |
2OE8|1|A|C|15 | 2OE8|1|A|C|16 | | s35 | |
2OE8|1|A|C|15 | 2OE8|1|B|G|85 | cWW | | |
2OE8|1|A|C|16 | 2OE8|1|A|C|15 | | s53 | |
2OE8|1|A|C|16 | 2OE8|1|A|C|16 | | | 0BPh |
2OE8|1|A|C|16 | 2OE8|1|B|G|84 | cWW | | |
2OE8|1|A|C|16 | 2OE8|1|B|G|85 | | s55 | |
2OE8|1|A|G|1 | 2OE8|1|A|G|1 | | | 0BPh |
2OE8|1|A|G|1 | 2OE8|1|A|G|2 | | s35 | |
2OE8|1|A|G|1405 | 2OE8|1|A|C|1404 | | s53 | |
2OE8|1|A|G|1405 | 2OE8|1|A|G|1405 | | | 0BPh |
2OE8|1|A|G|1405 | 2OE8|1|A|U|1406 | | s35 | |
2OE8|1|A|G|1405 | 2OE8|1|B|C|1496 | cWW | | |
2OE8|1|A|G|1405 | 2OE8|1|B|G|1497 | | s55 | |
2OE8|1|A|G|1408 | 2OE8|1|A|C|1407 | | s53 | |
2OE8|1|A|G|1408 | 2OE8|1|A|C|1409 | | s35 | |
2OE8|1|A|G|1408 | 2OE8|1|A|G|1408 | | | 0BPh |
2OE8|1|A|G|1408 | 2OE8|1|B|A|1493 | ntSH | | 4BPh |
2OE8|1|A|G|1408 | 2OE8|1|B|G|1494 | | s55 | |
2OE8|1|A|G|1412 | 2OE8|1|A|A|1411 | | s53 | |
2OE8|1|A|G|1412 | 2OE8|1|A|G|1412 | | | 0BPh |
2OE8|1|A|G|1412 | 2OE8|1|A|U|1413 | | s35 | |
2OE8|1|A|G|1412 | 2OE8|1|B|C|1488 | cWW | | |
2OE8|1|A|G|1412 | 2OE8|1|B|U|1489 | | s55 | |
2OE8|1|A|G|2 | 2OE8|1|A|G|1 | | s53 | |
2OE8|1|A|G|2 | 2OE8|1|A|G|2 | | | 0BPh |
2OE8|1|A|G|2 | 2OE8|1|A|G|3 | | s35 | |
2OE8|1|A|G|2 | 2OE8|1|B|C|99 | cWW | | |
2OE8|1|A|G|3 | 2OE8|1|A|C|1404 | | s35 | |
2OE8|1|A|G|3 | 2OE8|1|A|G|2 | | s53 | |
2OE8|1|A|G|3 | 2OE8|1|A|G|3 | | | 0BPh |
2OE8|1|A|G|3 | 2OE8|1|B|C|98 | cWW | | |
2OE8|1|A|G|3 | 2OE8|1|B|C|99 | | s55 | |
2OE8|1|A|U|1406 | 2OE8|1|A|C|1407 | | s35 | |
2OE8|1|A|U|1406 | 2OE8|1|A|G|1405 | | s53 | |
2OE8|1|A|U|1406 | 2OE8|1|A|U|1406 | | | 0BPh |
2OE8|1|A|U|1406 | 2OE8|1|B|U|1495 | cWW | | |
2OE8|1|A|U|1410 | 2OE8|1|A|A|1411 | | s35 | |
2OE8|1|A|U|1410 | 2OE8|1|A|C|1409 | | s53 | |
2OE8|1|A|U|1410 | 2OE8|1|A|U|1410 | | | 0BPh |
2OE8|1|A|U|1410 | 2OE8|1|B|A|1490 | cWW | | |
2OE8|1|A|U|1413 | 2OE8|1|A|A|14 | | s35 | |
2OE8|1|A|U|1413 | 2OE8|1|A|G|1412 | | s53 | |
2OE8|1|A|U|1413 | 2OE8|1|A|U|1413 | | | 0BPh |
2OE8|1|A|U|1413 | 2OE8|1|B|A|1487 | cWW | | |
2OE8|1|B|A|1487 | 2OE8|1|A|A|14 | | s55 | |
2OE8|1|B|A|1487 | 2OE8|1|A|U|1413 | cWW | | |
2OE8|1|B|A|1487 | 2OE8|1|B|A|1487 | | | 0BPh |
2OE8|1|B|A|1487 | 2OE8|1|B|C|1488 | | s35 | |
2OE8|1|B|A|1487 | 2OE8|1|B|U|86 | | s53 | |
2OE8|1|B|A|1490 | 2OE8|1|A|A|1411 | | s55 | |
2OE8|1|B|A|1490 | 2OE8|1|A|U|1410 | cWW | | |
2OE8|1|B|A|1490 | 2OE8|1|B|A|1490 | | | 0BPh |
2OE8|1|B|A|1490 | 2OE8|1|B|A|1492 | | s35 | |
2OE8|1|B|A|1490 | 2OE8|1|B|U|1489 | | s53 | |
2OE8|1|B|A|1492 | 2OE8|1|A|C|1409 | cSW | | |
2OE8|1|B|A|1492 | 2OE8|1|B|A|1490 | | s53 | |
2OE8|1|B|A|1492 | 2OE8|1|B|A|1491 | | | 7BPh |
2OE8|1|B|A|1492 | 2OE8|1|B|A|1492 | | | n0BP |
2OE8|1|B|A|1493 | 2OE8|1|A|C|1409 | | | |
2OE8|1|B|A|1493 | 2OE8|1|A|G|1408 | ntHS | | |
2OE8|1|B|A|1493 | 2OE8|1|B|A|1493 | | | 0BPh |
2OE8|1|B|C|1488 | 2OE8|1|A|G|1412 | cWW | | |
2OE8|1|B|C|1488 | 2OE8|1|B|A|1487 | | s53 | |
2OE8|1|B|C|1488 | 2OE8|1|B|C|1488 | | | 0BPh |
2OE8|1|B|C|1488 | 2OE8|1|B|U|1489 | | s35 | |
2OE8|1|B|C|1496 | 2OE8|1|A|G|1405 | cWW | | |
2OE8|1|B|C|1496 | 2OE8|1|B|C|1496 | | | 0BPh |
2OE8|1|B|C|1496 | 2OE8|1|B|G|1497 | | s35 | |
2OE8|1|B|C|1496 | 2OE8|1|B|U|1495 | | s53 | |
2OE8|1|B|C|83 | 2OE8|1|B|C|83 | | | 0BPh |
2OE8|1|B|C|98 | 2OE8|1|A|G|3 | cWW | | |
2OE8|1|B|C|98 | 2OE8|1|B|C|98 | | | 0BPh |
2OE8|1|B|C|98 | 2OE8|1|B|C|99 | | s35 | |
2OE8|1|B|C|98 | 2OE8|1|B|G|1497 | | s53 | |
2OE8|1|B|C|99 | 2OE8|1|A|G|2 | cWW | | |
2OE8|1|B|C|99 | 2OE8|1|A|G|3 | | s55 | |
2OE8|1|B|C|99 | 2OE8|1|B|C|98 | | s53 | |
2OE8|1|B|C|99 | 2OE8|1|B|C|99 | | | 0BPh |
2OE8|1|B|G|1494 | 2OE8|1|A|C|1407 | cWW | | |
2OE8|1|B|G|1494 | 2OE8|1|A|G|1408 | | s55 | |
2OE8|1|B|G|1494 | 2OE8|1|B|G|1494 | | | 0BPh |
2OE8|1|B|G|1494 | 2OE8|1|B|U|1495 | | s35 | |
2OE8|1|B|G|1497 | 2OE8|1|A|C|1404 | cWW | | |
2OE8|1|B|G|1497 | 2OE8|1|A|G|1405 | | s55 | |
2OE8|1|B|G|1497 | 2OE8|1|B|C|1496 | | s53 | |
2OE8|1|B|G|1497 | 2OE8|1|B|C|98 | | s35 | |
2OE8|1|B|G|1497 | 2OE8|1|B|G|1497 | | | 0BPh |
2OE8|1|B|G|84 | 2OE8|1|A|C|16 | cWW | | |
2OE8|1|B|G|84 | 2OE8|1|B|G|84 | | | 0BPh |
2OE8|1|B|G|84 | 2OE8|1|B|G|85 | | s35 | |
2OE8|1|B|G|85 | 2OE8|1|A|C|15 | cWW | | |
2OE8|1|B|G|85 | 2OE8|1|A|C|16 | | s55 | |
2OE8|1|B|G|85 | 2OE8|1|B|G|84 | | s53 | |
2OE8|1|B|G|85 | 2OE8|1|B|G|85 | | | 0BPh |
2OE8|1|B|G|85 | 2OE8|1|B|U|86 | | s35 | |
2OE8|1|B|U|1489 | 2OE8|1|A|A|1411 | cWW | | |
2OE8|1|B|U|1489 | 2OE8|1|A|G|1412 | | s55 | |
2OE8|1|B|U|1489 | 2OE8|1|B|A|1490 | | s35 | |
2OE8|1|B|U|1489 | 2OE8|1|B|C|1488 | | s53 | |
2OE8|1|B|U|1489 | 2OE8|1|B|U|1489 | | | 0BPh |
2OE8|1|B|U|1495 | 2OE8|1|A|U|1406 | cWW | | |
2OE8|1|B|U|1495 | 2OE8|1|B|C|1496 | | s35 | |
2OE8|1|B|U|1495 | 2OE8|1|B|G|1494 | | s53 | |
2OE8|1|B|U|1495 | 2OE8|1|B|U|1495 | | | 0BPh |
2OE8|1|B|U|86 | 2OE8|1|A|A|14 | cWW | | |
2OE8|1|B|U|86 | 2OE8|1|B|A|1487 | | s35 | |
2OE8|1|B|U|86 | 2OE8|1|B|G|85 | | s53 | |
2OE8|1|B|U|86 | 2OE8|1|B|U|86 | | | 0BPh |
Base-Pairs | Count (14) | Relative Frequency |
---|
cWW | 13 | 0.929 |
cWS | 1 | 0.071 |
Base-Phosphate | Count (33) | Relative Frequency |
---|
4BPh | 1 | 0.030 |
7BPh | 1 | 0.030 |
0BPh | 31 | 0.939 |
Base-Stacking | Count (16) | Relative Frequency |
---|
s53 | 9 | 0.562 |
s55 | 7 | 0.438 |