A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
Search for released structures

NDB ID: DR0036  PDB ID: 2OE8 

RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
2OE8|1|A|A|142OE8|1|A|A|140BPh
2OE8|1|A|A|142OE8|1|A|C|15s35
2OE8|1|A|A|142OE8|1|A|U|1413s53
2OE8|1|A|A|142OE8|1|B|A|1487s55
2OE8|1|A|A|142OE8|1|B|U|86cWW
2OE8|1|A|A|14112OE8|1|A|A|14110BPh
2OE8|1|A|A|14112OE8|1|A|G|1412s35
2OE8|1|A|A|14112OE8|1|A|U|1410s53
2OE8|1|A|A|14112OE8|1|B|A|1490s55
2OE8|1|A|A|14112OE8|1|B|U|1489cWW
2OE8|1|A|C|14042OE8|1|A|C|14040BPh
2OE8|1|A|C|14042OE8|1|A|G|1405s35
2OE8|1|A|C|14042OE8|1|A|G|3s53
2OE8|1|A|C|14042OE8|1|B|G|1497cWW
2OE8|1|A|C|14072OE8|1|A|C|14070BPh
2OE8|1|A|C|14072OE8|1|A|G|1408s35
2OE8|1|A|C|14072OE8|1|A|U|1406s53
2OE8|1|A|C|14072OE8|1|B|G|1494cWW
2OE8|1|A|C|14092OE8|1|A|C|14090BPh
2OE8|1|A|C|14092OE8|1|A|G|1408s53
2OE8|1|A|C|14092OE8|1|A|U|1410s35
2OE8|1|A|C|14092OE8|1|B|A|1492cWS
2OE8|1|A|C|152OE8|1|A|A|14s53
2OE8|1|A|C|152OE8|1|A|C|150BPh
2OE8|1|A|C|152OE8|1|A|C|16s35
2OE8|1|A|C|152OE8|1|B|G|85cWW
2OE8|1|A|C|162OE8|1|A|C|15s53
2OE8|1|A|C|162OE8|1|A|C|160BPh
2OE8|1|A|C|162OE8|1|B|G|84cWW
2OE8|1|A|C|162OE8|1|B|G|85s55
2OE8|1|A|G|12OE8|1|A|G|10BPh
2OE8|1|A|G|12OE8|1|A|G|2s35
2OE8|1|A|G|14052OE8|1|A|C|1404s53
2OE8|1|A|G|14052OE8|1|A|G|14050BPh
2OE8|1|A|G|14052OE8|1|A|U|1406s35
2OE8|1|A|G|14052OE8|1|B|C|1496cWW
2OE8|1|A|G|14052OE8|1|B|G|1497s55
2OE8|1|A|G|14082OE8|1|A|C|1407s53
2OE8|1|A|G|14082OE8|1|A|C|1409s35
2OE8|1|A|G|14082OE8|1|A|G|14080BPh
2OE8|1|A|G|14082OE8|1|B|A|1493ntSH4BPh
2OE8|1|A|G|14082OE8|1|B|G|1494s55
2OE8|1|A|G|14122OE8|1|A|A|1411s53
2OE8|1|A|G|14122OE8|1|A|G|14120BPh
2OE8|1|A|G|14122OE8|1|A|U|1413s35
2OE8|1|A|G|14122OE8|1|B|C|1488cWW
2OE8|1|A|G|14122OE8|1|B|U|1489s55
2OE8|1|A|G|22OE8|1|A|G|1s53
2OE8|1|A|G|22OE8|1|A|G|20BPh
2OE8|1|A|G|22OE8|1|A|G|3s35
2OE8|1|A|G|22OE8|1|B|C|99cWW
2OE8|1|A|G|32OE8|1|A|C|1404s35
2OE8|1|A|G|32OE8|1|A|G|2s53
2OE8|1|A|G|32OE8|1|A|G|30BPh
2OE8|1|A|G|32OE8|1|B|C|98cWW
2OE8|1|A|G|32OE8|1|B|C|99s55
2OE8|1|A|U|14062OE8|1|A|C|1407s35
2OE8|1|A|U|14062OE8|1|A|G|1405s53
2OE8|1|A|U|14062OE8|1|A|U|14060BPh
2OE8|1|A|U|14062OE8|1|B|U|1495cWW
2OE8|1|A|U|14102OE8|1|A|A|1411s35
2OE8|1|A|U|14102OE8|1|A|C|1409s53
2OE8|1|A|U|14102OE8|1|A|U|14100BPh
2OE8|1|A|U|14102OE8|1|B|A|1490cWW
2OE8|1|A|U|14132OE8|1|A|A|14s35
2OE8|1|A|U|14132OE8|1|A|G|1412s53
2OE8|1|A|U|14132OE8|1|A|U|14130BPh
2OE8|1|A|U|14132OE8|1|B|A|1487cWW
2OE8|1|B|A|14872OE8|1|A|A|14s55
2OE8|1|B|A|14872OE8|1|A|U|1413cWW
2OE8|1|B|A|14872OE8|1|B|A|14870BPh
2OE8|1|B|A|14872OE8|1|B|C|1488s35
2OE8|1|B|A|14872OE8|1|B|U|86s53
2OE8|1|B|A|14902OE8|1|A|A|1411s55
2OE8|1|B|A|14902OE8|1|A|U|1410cWW
2OE8|1|B|A|14902OE8|1|B|A|14900BPh
2OE8|1|B|A|14902OE8|1|B|A|1492s35
2OE8|1|B|A|14902OE8|1|B|U|1489s53
2OE8|1|B|A|14922OE8|1|A|C|1409cSW
2OE8|1|B|A|14922OE8|1|B|A|1490s53
2OE8|1|B|A|14922OE8|1|B|A|14917BPh
2OE8|1|B|A|14922OE8|1|B|A|1492n0BP
2OE8|1|B|A|14932OE8|1|A|C|1409
2OE8|1|B|A|14932OE8|1|A|G|1408ntHS
2OE8|1|B|A|14932OE8|1|B|A|14930BPh
2OE8|1|B|C|14882OE8|1|A|G|1412cWW
2OE8|1|B|C|14882OE8|1|B|A|1487s53
2OE8|1|B|C|14882OE8|1|B|C|14880BPh
2OE8|1|B|C|14882OE8|1|B|U|1489s35
2OE8|1|B|C|14962OE8|1|A|G|1405cWW
2OE8|1|B|C|14962OE8|1|B|C|14960BPh
2OE8|1|B|C|14962OE8|1|B|G|1497s35
2OE8|1|B|C|14962OE8|1|B|U|1495s53
2OE8|1|B|C|832OE8|1|B|C|830BPh
2OE8|1|B|C|982OE8|1|A|G|3cWW
2OE8|1|B|C|982OE8|1|B|C|980BPh
2OE8|1|B|C|982OE8|1|B|C|99s35
2OE8|1|B|C|982OE8|1|B|G|1497s53
2OE8|1|B|C|992OE8|1|A|G|2cWW
2OE8|1|B|C|992OE8|1|A|G|3s55
2OE8|1|B|C|992OE8|1|B|C|98s53
2OE8|1|B|C|992OE8|1|B|C|990BPh
2OE8|1|B|G|14942OE8|1|A|C|1407cWW
2OE8|1|B|G|14942OE8|1|A|G|1408s55
2OE8|1|B|G|14942OE8|1|B|G|14940BPh
2OE8|1|B|G|14942OE8|1|B|U|1495s35
2OE8|1|B|G|14972OE8|1|A|C|1404cWW
2OE8|1|B|G|14972OE8|1|A|G|1405s55
2OE8|1|B|G|14972OE8|1|B|C|1496s53
2OE8|1|B|G|14972OE8|1|B|C|98s35
2OE8|1|B|G|14972OE8|1|B|G|14970BPh
2OE8|1|B|G|842OE8|1|A|C|16cWW
2OE8|1|B|G|842OE8|1|B|G|840BPh
2OE8|1|B|G|842OE8|1|B|G|85s35
2OE8|1|B|G|852OE8|1|A|C|15cWW
2OE8|1|B|G|852OE8|1|A|C|16s55
2OE8|1|B|G|852OE8|1|B|G|84s53
2OE8|1|B|G|852OE8|1|B|G|850BPh
2OE8|1|B|G|852OE8|1|B|U|86s35
2OE8|1|B|U|14892OE8|1|A|A|1411cWW
2OE8|1|B|U|14892OE8|1|A|G|1412s55
2OE8|1|B|U|14892OE8|1|B|A|1490s35
2OE8|1|B|U|14892OE8|1|B|C|1488s53
2OE8|1|B|U|14892OE8|1|B|U|14890BPh
2OE8|1|B|U|14952OE8|1|A|U|1406cWW
2OE8|1|B|U|14952OE8|1|B|C|1496s35
2OE8|1|B|U|14952OE8|1|B|G|1494s53
2OE8|1|B|U|14952OE8|1|B|U|14950BPh
2OE8|1|B|U|862OE8|1|A|A|14cWW
2OE8|1|B|U|862OE8|1|B|A|1487s35
2OE8|1|B|U|862OE8|1|B|G|85s53
2OE8|1|B|U|862OE8|1|B|U|860BPh


Base-PairsCount (14)Relative Frequency
cWW130.929
cWS10.071
Base-PhosphateCount (33)Relative Frequency
4BPh10.030
7BPh10.030
0BPh310.939
Base-StackingCount (16)Relative Frequency
s5390.562
s5570.438

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)

ndbadmin@ndbserver.rutgers.edui ©1995-2022 The Nucleic Acid Database Project | Rutgers, The State University of New Jersey