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NDB ID: PR0305  PDB ID: 2R93 

RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
2R93|1|R|A|152R93|1|R|A|150BPh
2R93|1|R|A|152R93|1|R|A|16s35
2R93|1|R|A|152R93|1|R|C|6s55
2R93|1|R|A|152R93|1|R|G|14s53
2R93|1|R|A|152R93|1|R|U|5cWW
2R93|1|R|A|162R93|1|R|A|15s53
2R93|1|R|A|162R93|1|R|A|160BPh
2R93|1|R|A|162R93|1|R|U|17s35
2R93|1|R|A|162R93|1|R|U|4cWW
2R93|1|R|A|162R93|1|R|U|5ns55
2R93|1|R|A|32R93|1|R|A|30BPh
2R93|1|R|A|32R93|1|R|C|18ns55
2R93|1|R|A|32R93|1|R|G|2s53
2R93|1|R|A|32R93|1|R|U|17cWW
2R93|1|R|A|32R93|1|R|U|4s35
2R93|1|R|C|122R93|1|R|C|120BPh
2R93|1|R|C|122R93|1|R|G|13ns35
2R93|1|R|C|182R93|1|R|A|3ns55
2R93|1|R|C|182R93|1|R|C|180BPh
2R93|1|R|C|182R93|1|R|G|2cWW
2R93|1|R|C|182R93|1|R|U|17s53
2R93|1|R|C|62R93|1|R|A|15s55
2R93|1|R|C|62R93|1|R|G|14cWW
2R93|1|R|C|62R93|1|R|U|5s53
2R93|1|R|C|62R93|1|R|U|7s35
2R93|1|R|G|132R93|1|R|C|12ns53
2R93|1|R|G|132R93|1|R|G|130BPh
2R93|1|R|G|132R93|1|R|G|14s35
2R93|1|R|G|132R93|1|R|U|7cWW
2R93|1|R|G|142R93|1|R|A|15s35
2R93|1|R|G|142R93|1|R|C|6cWW
2R93|1|R|G|142R93|1|R|G|13s53
2R93|1|R|G|142R93|1|R|G|140BPh
2R93|1|R|G|142R93|1|R|U|7ns55
2R93|1|R|G|22R93|1|R|A|3s35
2R93|1|R|G|22R93|1|R|C|18cWW
2R93|1|R|G|22R93|1|R|G|20BPh
2R93|1|R|G|22R93|1|R|U|1s53
2R93|1|R|U|12R93|1|R|G|2s35
2R93|1|R|U|12R93|1|R|U|10BPh
2R93|1|R|U|172R93|1|R|A|16s53
2R93|1|R|U|172R93|1|R|A|3cWW
2R93|1|R|U|172R93|1|R|C|18s35
2R93|1|R|U|172R93|1|R|U|170BPh
2R93|1|R|U|42R93|1|R|A|16cWW
2R93|1|R|U|42R93|1|R|A|3s53
2R93|1|R|U|42R93|1|R|U|40BPh
2R93|1|R|U|42R93|1|R|U|5s35
2R93|1|R|U|52R93|1|R|A|15cWW
2R93|1|R|U|52R93|1|R|A|16ns55
2R93|1|R|U|52R93|1|R|C|6s35
2R93|1|R|U|52R93|1|R|U|4s53
2R93|1|R|U|52R93|1|R|U|50BPh
2R93|1|R|U|72R93|1|R|C|6s53
2R93|1|R|U|72R93|1|R|G|13cWW
2R93|1|R|U|72R93|1|R|G|14ns55
2R93|1|R|U|72R93|1|R|U|70BPh


Base-PairsCount (6)Relative Frequency
cWW61.000
Base-PhosphateCount (13)Relative Frequency
0BPh131.000
Base-StackingCount (6)Relative Frequency
s5350.833
s5510.167

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)

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