A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 23-Nov-2022 number of released structures: 12471
Search for released structures

NDB ID: PR0306  PDB ID: 2RD2 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
2RD2|1|B|A|9072RD2|1|B|A|9070BPh
2RD2|1|B|A|9072RD2|1|B|A|967s55
2RD2|1|B|A|9072RD2|1|B|C|949s35
2RD2|1|B|A|9072RD2|1|B|U|906s53
2RD2|1|B|A|9072RD2|1|B|U|966cWW
2RD2|1|B|A|9132RD2|1|B|A|9130BPh
2RD2|1|B|A|9132RD2|1|B|A|914s35
2RD2|1|B|A|9132RD2|1|B|A|922tSH
2RD2|1|B|A|9132RD2|1|B|A|945ntWW
2RD2|1|B|A|9132RD2|1|B|C|909n7BP
2RD2|1|B|A|9132RD2|1|B|C|912s53
2RD2|1|B|A|9132RD2|1|B|G|923ns55
2RD2|1|B|A|9132RD2|1|B|U|908s33
2RD2|1|B|A|9142RD2|1|B|A|913s53
2RD2|1|B|A|9142RD2|1|B|A|921cWS
2RD2|1|B|A|9142RD2|1|B|A|922s55
2RD2|1|B|A|9142RD2|1|B|G|915s35
2RD2|1|B|A|9142RD2|1|B|U|908tHW
2RD2|1|B|A|9212RD2|1|B|A|914cSW
2RD2|1|B|A|9212RD2|1|B|A|945s33
2RD2|1|B|A|9212RD2|1|B|C|948s55
2RD2|1|B|A|9212RD2|1|B|U|908tSS
2RD2|1|B|A|9212RD2|1|B|U|947
2RD2|1|B|A|9222RD2|1|B|A|913tHS
2RD2|1|B|A|9222RD2|1|B|A|914s55
2RD2|1|B|A|9222RD2|1|B|G|923s35
2RD2|1|B|A|9262RD2|1|B|A|9260BPh
2RD2|1|B|A|9262RD2|1|B|C|925s53
2RD2|1|B|A|9262RD2|1|B|C|927s35
2RD2|1|B|A|9262RD2|1|B|C|944cWW
2RD2|1|B|A|9262RD2|1|B|G|910s55
2RD2|1|B|A|9312RD2|1|B|A|9310BPh
2RD2|1|B|A|9312RD2|1|B|C|940ns55
2RD2|1|B|A|9312RD2|1|B|G|930s53
2RD2|1|B|A|9312RD2|1|B|U|932s35
2RD2|1|B|A|9312RD2|1|B|U|939cWW
2RD2|1|B|A|9372RD2|1|B|A|9370BPh
2RD2|1|B|A|9372RD2|1|B|U|933ntHS
2RD2|1|B|A|9372RD2|1|B|U|935s53
2RD2|1|B|A|9372RD2|1|B|U|938s35
2RD2|1|B|A|9452RD2|1|B|A|913ntWW
2RD2|1|B|A|9452RD2|1|B|A|921s33
2RD2|1|B|A|9452RD2|1|B|A|945n0BP
2RD2|1|B|A|9452RD2|1|B|C|909s552BPh
2RD2|1|B|A|9512RD2|1|B|A|9510BPh
2RD2|1|B|A|9512RD2|1|B|C|964s55
2RD2|1|B|A|9512RD2|1|B|G|950s53
2RD2|1|B|A|9512RD2|1|B|G|952s35
2RD2|1|B|A|9512RD2|1|B|U|963cWW
2RD2|1|B|A|9582RD2|1|B|C|961s35
2RD2|1|B|A|9582RD2|1|B|G|918s55
2RD2|1|B|A|9582RD2|1|B|U|954ntHW
2RD2|1|B|A|9582RD2|1|B|U|960ns33
2RD2|1|B|A|9592RD2|1|B|A|959n0BP
2RD2|1|B|A|9592RD2|1|B|C|916n6BP
2RD2|1|B|A|9592RD2|1|B|C|948ns53
2RD2|1|B|A|9592RD2|1|B|G|915s53
2RD2|1|B|A|9592RD2|1|B|U|960s35
2RD2|1|B|A|9672RD2|1|B|A|907s55
2RD2|1|B|A|9672RD2|1|B|A|9670BPh
2RD2|1|B|A|9672RD2|1|B|C|968s35
2RD2|1|B|A|9672RD2|1|B|U|906cWW
2RD2|1|B|A|9672RD2|1|B|U|966s53
2RD2|1|B|A|9722RD2|1|B|A|9720BPh
2RD2|1|B|A|9762RD2|1|B|A|9760BPh
2RD2|1|B|A|9762RD2|1|B|C|975s53
2RD2|1|B|C|9092RD2|1|B|A|945s55
2RD2|1|B|C|9092RD2|1|B|C|9090BPh
2RD2|1|B|C|9092RD2|1|B|G|923ntHH
2RD2|1|B|C|9112RD2|1|B|C|9110BPh
2RD2|1|B|C|9112RD2|1|B|C|912s35
2RD2|1|B|C|9112RD2|1|B|G|910s53
2RD2|1|B|C|9112RD2|1|B|G|924cWW
2RD2|1|B|C|9122RD2|1|B|A|913s35
2RD2|1|B|C|9122RD2|1|B|C|911s53
2RD2|1|B|C|9122RD2|1|B|C|912n0BP
2RD2|1|B|C|9122RD2|1|B|G|923cWW
2RD2|1|B|C|9122RD2|1|B|G|924s55
2RD2|1|B|C|9162RD2|1|B|C|9160BPh
2RD2|1|B|C|9162RD2|1|B|G|9158BPh
2RD2|1|B|C|9252RD2|1|B|A|926s35
2RD2|1|B|C|9252RD2|1|B|C|9250BPh
2RD2|1|B|C|9252RD2|1|B|G|910cWW
2RD2|1|B|C|9252RD2|1|B|G|924s53
2RD2|1|B|C|9272RD2|1|B|A|926s53
2RD2|1|B|C|9272RD2|1|B|C|9270BPh
2RD2|1|B|C|9272RD2|1|B|C|928s35
2RD2|1|B|C|9272RD2|1|B|G|943cWW
2RD2|1|B|C|9282RD2|1|B|C|927s53
2RD2|1|B|C|9282RD2|1|B|C|9280BPh
2RD2|1|B|C|9282RD2|1|B|G|929ns35
2RD2|1|B|C|9282RD2|1|B|G|942cWW
2RD2|1|B|C|9282RD2|1|B|G|943s55
2RD2|1|B|C|9342RD2|1|B|C|934n0BP
2RD2|1|B|C|9402RD2|1|B|A|931ns55
2RD2|1|B|C|9402RD2|1|B|C|9400BPh
2RD2|1|B|C|9402RD2|1|B|C|941s35
2RD2|1|B|C|9402RD2|1|B|G|930cWW
2RD2|1|B|C|9402RD2|1|B|U|939s53
2RD2|1|B|C|9412RD2|1|B|C|940s53
2RD2|1|B|C|9412RD2|1|B|C|9410BPh
2RD2|1|B|C|9412RD2|1|B|G|929cWW
2RD2|1|B|C|9412RD2|1|B|G|930s55
2RD2|1|B|C|9412RD2|1|B|G|942ns35
2RD2|1|B|C|9442RD2|1|B|A|926cWW
2RD2|1|B|C|9442RD2|1|B|C|9440BPh
2RD2|1|B|C|9442RD2|1|B|G|943s53
2RD2|1|B|C|9482RD2|1|B|A|921s55
2RD2|1|B|C|9482RD2|1|B|A|959ns35
2RD2|1|B|C|9482RD2|1|B|C|9480BPh
2RD2|1|B|C|9482RD2|1|B|G|915tWW
2RD2|1|B|C|9482RD2|1|B|U|947
2RD2|1|B|C|9492RD2|1|B|A|907s53
2RD2|1|B|C|9492RD2|1|B|C|9490BPh
2RD2|1|B|C|9492RD2|1|B|G|950s35
2RD2|1|B|C|9492RD2|1|B|G|965cWW
2RD2|1|B|C|9562RD2|1|B|C|9560BPh
2RD2|1|B|C|9562RD2|1|B|G|919cWW
2RD2|1|B|C|9562RD2|1|B|G|957s35
2RD2|1|B|C|9612RD2|1|B|A|958s53
2RD2|1|B|C|9612RD2|1|B|C|9610BPh
2RD2|1|B|C|9612RD2|1|B|C|962s35
2RD2|1|B|C|9612RD2|1|B|G|953cWW
2RD2|1|B|C|9612RD2|1|B|U|9609BPh
2RD2|1|B|C|9622RD2|1|B|C|961s53
2RD2|1|B|C|9622RD2|1|B|C|9620BPh
2RD2|1|B|C|9622RD2|1|B|G|952cWW
2RD2|1|B|C|9622RD2|1|B|G|953s55
2RD2|1|B|C|9622RD2|1|B|U|963s35
2RD2|1|B|C|9642RD2|1|B|A|951s55
2RD2|1|B|C|9642RD2|1|B|C|9640BPh
2RD2|1|B|C|9642RD2|1|B|G|950cWW
2RD2|1|B|C|9642RD2|1|B|G|965s35
2RD2|1|B|C|9642RD2|1|B|U|963s53
2RD2|1|B|C|9682RD2|1|B|A|967s53
2RD2|1|B|C|9682RD2|1|B|C|9680BPh
2RD2|1|B|C|9682RD2|1|B|C|969s35
2RD2|1|B|C|9682RD2|1|B|G|905cWW
2RD2|1|B|C|9692RD2|1|B|C|968s53
2RD2|1|B|C|9692RD2|1|B|C|9690BPh
2RD2|1|B|C|9692RD2|1|B|C|970s35
2RD2|1|B|C|9692RD2|1|B|G|904cWW
2RD2|1|B|C|9692RD2|1|B|G|905s55
2RD2|1|B|C|9702RD2|1|B|C|969s53
2RD2|1|B|C|9702RD2|1|B|C|9700BPh
2RD2|1|B|C|9702RD2|1|B|C|971s35
2RD2|1|B|C|9702RD2|1|B|G|903cWW
2RD2|1|B|C|9702RD2|1|B|G|904s55
2RD2|1|B|C|9712RD2|1|B|C|970s53
2RD2|1|B|C|9712RD2|1|B|C|9710BPh
2RD2|1|B|C|9712RD2|1|B|G|902cWW
2RD2|1|B|C|9712RD2|1|B|G|903s55
2RD2|1|B|C|9742RD2|1|B|C|9740BPh
2RD2|1|B|C|9752RD2|1|B|A|976s35
2RD2|1|B|C|9752RD2|1|B|G|973s55
2RD2|1|B|G|9022RD2|1|B|C|971cWW
2RD2|1|B|G|9022RD2|1|B|G|9020BPh
2RD2|1|B|G|9022RD2|1|B|G|903s35
2RD2|1|B|G|9032RD2|1|B|C|970cWW
2RD2|1|B|G|9032RD2|1|B|C|971s55
2RD2|1|B|G|9032RD2|1|B|G|902s53
2RD2|1|B|G|9032RD2|1|B|G|9030BPh
2RD2|1|B|G|9032RD2|1|B|G|904s35
2RD2|1|B|G|9042RD2|1|B|C|969cWW
2RD2|1|B|G|9042RD2|1|B|C|970s55
2RD2|1|B|G|9042RD2|1|B|G|903s53
2RD2|1|B|G|9042RD2|1|B|G|9040BPh
2RD2|1|B|G|9042RD2|1|B|G|905s35
2RD2|1|B|G|9052RD2|1|B|C|968cWW
2RD2|1|B|G|9052RD2|1|B|C|969s55
2RD2|1|B|G|9052RD2|1|B|G|904s53
2RD2|1|B|G|9052RD2|1|B|G|905n0BP
2RD2|1|B|G|9052RD2|1|B|U|906s35
2RD2|1|B|G|9102RD2|1|B|A|926s55
2RD2|1|B|G|9102RD2|1|B|C|911s35
2RD2|1|B|G|9102RD2|1|B|C|925cWW
2RD2|1|B|G|9102RD2|1|B|G|9100BPh
2RD2|1|B|G|9152RD2|1|B|A|914s53
2RD2|1|B|G|9152RD2|1|B|A|959s35
2RD2|1|B|G|9152RD2|1|B|C|948tWW
2RD2|1|B|G|9152RD2|1|B|G|915n0BP
2RD2|1|B|G|9152RD2|1|B|U|908s55
2RD2|1|B|G|9182RD2|1|B|A|958s55
2RD2|1|B|G|9182RD2|1|B|G|957s33
2RD2|1|B|G|9182RD2|1|B|U|955ntWS
2RD2|1|B|G|9192RD2|1|B|C|956cWW
2RD2|1|B|G|9192RD2|1|B|G|9190BPh
2RD2|1|B|G|9192RD2|1|B|G|957s55
2RD2|1|B|G|9192RD2|1|B|U|920
2RD2|1|B|G|9232RD2|1|B|A|913ns55
2RD2|1|B|G|9232RD2|1|B|A|922s53
2RD2|1|B|G|9232RD2|1|B|C|909ntHH
2RD2|1|B|G|9232RD2|1|B|C|912cWW
2RD2|1|B|G|9232RD2|1|B|G|9230BPh
2RD2|1|B|G|9232RD2|1|B|G|924s35
2RD2|1|B|G|9242RD2|1|B|C|911cWW
2RD2|1|B|G|9242RD2|1|B|C|912s55
2RD2|1|B|G|9242RD2|1|B|C|925s35
2RD2|1|B|G|9242RD2|1|B|G|923s53
2RD2|1|B|G|9242RD2|1|B|G|9240BPh
2RD2|1|B|G|9292RD2|1|B|C|928ns53
2RD2|1|B|G|9292RD2|1|B|C|941cWW
2RD2|1|B|G|9292RD2|1|B|G|929n0BP
2RD2|1|B|G|9292RD2|1|B|G|930s35
2RD2|1|B|G|9292RD2|1|B|G|942s55
2RD2|1|B|G|9302RD2|1|B|A|931s35
2RD2|1|B|G|9302RD2|1|B|C|940cWW
2RD2|1|B|G|9302RD2|1|B|C|941s55
2RD2|1|B|G|9302RD2|1|B|G|929s53
2RD2|1|B|G|9302RD2|1|B|G|9300BPh
2RD2|1|B|G|9362RD2|1|B|G|936n0BP
2RD2|1|B|G|9422RD2|1|B|C|928cWW
2RD2|1|B|G|9422RD2|1|B|C|941ns53
2RD2|1|B|G|9422RD2|1|B|G|929s55
2RD2|1|B|G|9422RD2|1|B|G|9420BPh
2RD2|1|B|G|9422RD2|1|B|G|943s35
2RD2|1|B|G|9432RD2|1|B|C|927cWW
2RD2|1|B|G|9432RD2|1|B|C|928s55
2RD2|1|B|G|9432RD2|1|B|C|944s35
2RD2|1|B|G|9432RD2|1|B|G|942s53
2RD2|1|B|G|9432RD2|1|B|G|9430BPh
2RD2|1|B|G|9502RD2|1|B|A|951s35
2RD2|1|B|G|9502RD2|1|B|C|949s53
2RD2|1|B|G|9502RD2|1|B|C|964cWW
2RD2|1|B|G|9502RD2|1|B|G|9500BPh
2RD2|1|B|G|9502RD2|1|B|G|965s55
2RD2|1|B|G|9522RD2|1|B|A|951s53
2RD2|1|B|G|9522RD2|1|B|C|962cWW
2RD2|1|B|G|9522RD2|1|B|G|953s35
2RD2|1|B|G|9522RD2|1|B|U|963s55
2RD2|1|B|G|9532RD2|1|B|C|961cWW
2RD2|1|B|G|9532RD2|1|B|C|962s55
2RD2|1|B|G|9532RD2|1|B|G|952s53
2RD2|1|B|G|9532RD2|1|B|G|9530BPh
2RD2|1|B|G|9532RD2|1|B|U|954s35
2RD2|1|B|G|9572RD2|1|B|C|956s53
2RD2|1|B|G|9572RD2|1|B|G|918s33
2RD2|1|B|G|9572RD2|1|B|G|919s55
2RD2|1|B|G|9572RD2|1|B|G|9570BPh
2RD2|1|B|G|9652RD2|1|B|C|949cWW
2RD2|1|B|G|9652RD2|1|B|C|964s53
2RD2|1|B|G|9652RD2|1|B|G|950s55
2RD2|1|B|G|9652RD2|1|B|U|966s35
2RD2|1|B|G|9732RD2|1|B|A|9721BPh
2RD2|1|B|G|9732RD2|1|B|C|975s55n0BP
2RD2|1|B|U|9062RD2|1|B|A|907s35
2RD2|1|B|U|9062RD2|1|B|A|967cWW
2RD2|1|B|U|9062RD2|1|B|G|905s53
2RD2|1|B|U|9062RD2|1|B|U|9060BPh
2RD2|1|B|U|9082RD2|1|B|A|913s33
2RD2|1|B|U|9082RD2|1|B|A|914tWH
2RD2|1|B|U|9082RD2|1|B|A|921tSS
2RD2|1|B|U|9082RD2|1|B|G|915s55
2RD2|1|B|U|9082RD2|1|B|U|9080BPh
2RD2|1|B|U|9202RD2|1|B|G|919
2RD2|1|B|U|9202RD2|1|B|U|9200BPh
2RD2|1|B|U|9322RD2|1|B|A|931s53
2RD2|1|B|U|9322RD2|1|B|U|932n0BP
2RD2|1|B|U|9322RD2|1|B|U|933s35
2RD2|1|B|U|9322RD2|1|B|U|938ncWW
2RD2|1|B|U|9332RD2|1|B|A|937ntSH
2RD2|1|B|U|9332RD2|1|B|U|932s53
2RD2|1|B|U|9332RD2|1|B|U|9330BPh
2RD2|1|B|U|9352RD2|1|B|A|937s35
2RD2|1|B|U|9352RD2|1|B|U|9350BPh
2RD2|1|B|U|9382RD2|1|B|A|937s53n9BP
2RD2|1|B|U|9382RD2|1|B|U|932ncWW
2RD2|1|B|U|9382RD2|1|B|U|9380BPh
2RD2|1|B|U|9382RD2|1|B|U|939s35
2RD2|1|B|U|9392RD2|1|B|A|931cWW
2RD2|1|B|U|9392RD2|1|B|C|940s35
2RD2|1|B|U|9392RD2|1|B|U|938s53
2RD2|1|B|U|9392RD2|1|B|U|9390BPh
2RD2|1|B|U|9472RD2|1|B|A|921
2RD2|1|B|U|9472RD2|1|B|C|948n0BP
2RD2|1|B|U|9472RD2|1|B|U|947n0BP
2RD2|1|B|U|9542RD2|1|B|A|958ntWH
2RD2|1|B|U|9542RD2|1|B|G|953s53
2RD2|1|B|U|9542RD2|1|B|U|9540BPh
2RD2|1|B|U|9542RD2|1|B|U|955s35
2RD2|1|B|U|9552RD2|1|B|A|9585BPh
2RD2|1|B|U|9552RD2|1|B|G|918ntSW
2RD2|1|B|U|9552RD2|1|B|U|954s53
2RD2|1|B|U|9552RD2|1|B|U|9550BPh
2RD2|1|B|U|9602RD2|1|B|A|958ns33
2RD2|1|B|U|9602RD2|1|B|A|959s53n9BP
2RD2|1|B|U|9602RD2|1|B|U|960n0BP
2RD2|1|B|U|9632RD2|1|B|A|951cWW
2RD2|1|B|U|9632RD2|1|B|C|962s53
2RD2|1|B|U|9632RD2|1|B|C|964s35
2RD2|1|B|U|9632RD2|1|B|G|952s55
2RD2|1|B|U|9632RD2|1|B|U|9630BPh
2RD2|1|B|U|9662RD2|1|B|A|907cWW
2RD2|1|B|U|9662RD2|1|B|A|967s35
2RD2|1|B|U|9662RD2|1|B|G|965s53
2RD2|1|B|U|9662RD2|1|B|U|9660BPh


Base-PairsCount (26)Relative Frequency
cWW210.808
tWW10.038
tWH10.038
cWS10.038
tHS10.038
tSS10.038
Base-PhosphateCount (58)Relative Frequency
1BPh10.017
2BPh10.017
5BPh10.017
8BPh10.017
9BPh10.017
0BPh530.914
Base-StackingCount (37)Relative Frequency
s3330.081
s53140.378
s55200.541

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)