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As of 18-May-2022 number of released structures: 12082
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NDB ID: PR0307  PDB ID: 2RE8 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
2RE8|1|B|A|9072RE8|1|B|A|9070BPh
2RE8|1|B|A|9072RE8|1|B|A|967s55
2RE8|1|B|A|9072RE8|1|B|C|949s35
2RE8|1|B|A|9072RE8|1|B|U|906s53
2RE8|1|B|A|9072RE8|1|B|U|966cWW
2RE8|1|B|A|9132RE8|1|B|A|9130BPh
2RE8|1|B|A|9132RE8|1|B|A|914s35
2RE8|1|B|A|9132RE8|1|B|A|922tSH
2RE8|1|B|A|9132RE8|1|B|A|945tWW
2RE8|1|B|A|9132RE8|1|B|C|909ns55n7BP
2RE8|1|B|A|9132RE8|1|B|C|912s53
2RE8|1|B|A|9132RE8|1|B|G|923ns55
2RE8|1|B|A|9132RE8|1|B|U|908s33
2RE8|1|B|A|9142RE8|1|B|A|913s53
2RE8|1|B|A|9142RE8|1|B|A|921cWS
2RE8|1|B|A|9142RE8|1|B|A|922s55
2RE8|1|B|A|9142RE8|1|B|G|915s35
2RE8|1|B|A|9142RE8|1|B|U|908tHW
2RE8|1|B|A|9212RE8|1|B|A|914cSW
2RE8|1|B|A|9212RE8|1|B|A|945s33
2RE8|1|B|A|9212RE8|1|B|C|948s55
2RE8|1|B|A|9212RE8|1|B|G|915ncSS
2RE8|1|B|A|9212RE8|1|B|U|908tSS
2RE8|1|B|A|9212RE8|1|B|U|947ns55
2RE8|1|B|A|9222RE8|1|B|A|913tHS
2RE8|1|B|A|9222RE8|1|B|A|914s55
2RE8|1|B|A|9222RE8|1|B|G|923s35
2RE8|1|B|A|9262RE8|1|B|A|9260BPh
2RE8|1|B|A|9262RE8|1|B|C|925s53
2RE8|1|B|A|9262RE8|1|B|C|927s35
2RE8|1|B|A|9262RE8|1|B|C|944cWW
2RE8|1|B|A|9262RE8|1|B|G|910s55
2RE8|1|B|A|9312RE8|1|B|A|9310BPh
2RE8|1|B|A|9312RE8|1|B|C|940ns55
2RE8|1|B|A|9312RE8|1|B|G|930s53
2RE8|1|B|A|9312RE8|1|B|U|932s35
2RE8|1|B|A|9312RE8|1|B|U|939cWW
2RE8|1|B|A|9372RE8|1|B|A|9370BPh
2RE8|1|B|A|9372RE8|1|B|U|933ntHS
2RE8|1|B|A|9372RE8|1|B|U|935s53
2RE8|1|B|A|9372RE8|1|B|U|938s35
2RE8|1|B|A|9452RE8|1|B|A|913tWW
2RE8|1|B|A|9452RE8|1|B|A|921s33
2RE8|1|B|A|9452RE8|1|B|A|945n0BP
2RE8|1|B|A|9452RE8|1|B|C|909s552BPh
2RE8|1|B|A|9512RE8|1|B|A|9510BPh
2RE8|1|B|A|9512RE8|1|B|C|964ns55
2RE8|1|B|A|9512RE8|1|B|G|950s53
2RE8|1|B|A|9512RE8|1|B|G|952s35
2RE8|1|B|A|9512RE8|1|B|U|963cWW
2RE8|1|B|A|9582RE8|1|B|A|958n0BP
2RE8|1|B|A|9582RE8|1|B|C|961s35
2RE8|1|B|A|9582RE8|1|B|G|918s55
2RE8|1|B|A|9582RE8|1|B|U|954ntHW
2RE8|1|B|A|9582RE8|1|B|U|955ns55
2RE8|1|B|A|9582RE8|1|B|U|960
2RE8|1|B|A|9592RE8|1|B|A|9590BPh
2RE8|1|B|A|9592RE8|1|B|C|916n6BP
2RE8|1|B|A|9592RE8|1|B|C|948ns53
2RE8|1|B|A|9592RE8|1|B|G|915s53
2RE8|1|B|A|9592RE8|1|B|U|960s35
2RE8|1|B|A|9672RE8|1|B|A|907s55
2RE8|1|B|A|9672RE8|1|B|A|9670BPh
2RE8|1|B|A|9672RE8|1|B|C|968s35
2RE8|1|B|A|9672RE8|1|B|U|906cWW
2RE8|1|B|A|9672RE8|1|B|U|966s53
2RE8|1|B|A|9722RE8|1|B|A|9720BPh
2RE8|1|B|A|9762RE8|1|B|A|9760BPh
2RE8|1|B|A|9762RE8|1|B|C|975s53
2RE8|1|B|C|9092RE8|1|B|A|913ns55
2RE8|1|B|C|9092RE8|1|B|A|945s55
2RE8|1|B|C|9092RE8|1|B|C|909n0BP
2RE8|1|B|C|9092RE8|1|B|G|923ntHH
2RE8|1|B|C|9112RE8|1|B|C|9110BPh
2RE8|1|B|C|9112RE8|1|B|C|912s35
2RE8|1|B|C|9112RE8|1|B|G|910s53
2RE8|1|B|C|9112RE8|1|B|G|924cWW
2RE8|1|B|C|9122RE8|1|B|A|913s35
2RE8|1|B|C|9122RE8|1|B|C|911s53
2RE8|1|B|C|9122RE8|1|B|C|912n0BP
2RE8|1|B|C|9122RE8|1|B|G|923cWW
2RE8|1|B|C|9122RE8|1|B|G|924s55
2RE8|1|B|C|9162RE8|1|B|G|915n7BP
2RE8|1|B|C|9252RE8|1|B|A|926s35
2RE8|1|B|C|9252RE8|1|B|C|9250BPh
2RE8|1|B|C|9252RE8|1|B|G|910cWW
2RE8|1|B|C|9252RE8|1|B|G|924s53
2RE8|1|B|C|9272RE8|1|B|A|926s53
2RE8|1|B|C|9272RE8|1|B|C|9270BPh
2RE8|1|B|C|9272RE8|1|B|C|928s35
2RE8|1|B|C|9272RE8|1|B|G|943cWW
2RE8|1|B|C|9282RE8|1|B|C|927s53
2RE8|1|B|C|9282RE8|1|B|C|9280BPh
2RE8|1|B|C|9282RE8|1|B|G|929s35
2RE8|1|B|C|9282RE8|1|B|G|942cWW
2RE8|1|B|C|9282RE8|1|B|G|943s55
2RE8|1|B|C|9342RE8|1|B|C|934n0BP
2RE8|1|B|C|9402RE8|1|B|A|931ns55
2RE8|1|B|C|9402RE8|1|B|C|9400BPh
2RE8|1|B|C|9402RE8|1|B|C|941s35
2RE8|1|B|C|9402RE8|1|B|G|930cWW
2RE8|1|B|C|9402RE8|1|B|U|939s53
2RE8|1|B|C|9412RE8|1|B|C|940s53
2RE8|1|B|C|9412RE8|1|B|C|941n0BP
2RE8|1|B|C|9412RE8|1|B|G|929cWW
2RE8|1|B|C|9412RE8|1|B|G|930s55
2RE8|1|B|C|9412RE8|1|B|G|942ns35
2RE8|1|B|C|9442RE8|1|B|A|926cWW
2RE8|1|B|C|9442RE8|1|B|C|9440BPh
2RE8|1|B|C|9442RE8|1|B|G|943s53
2RE8|1|B|C|9482RE8|1|B|A|921s55
2RE8|1|B|C|9482RE8|1|B|A|959ns35n9BP
2RE8|1|B|C|9482RE8|1|B|C|9480BPh
2RE8|1|B|C|9482RE8|1|B|G|915tWW
2RE8|1|B|C|9482RE8|1|B|U|947
2RE8|1|B|C|9492RE8|1|B|A|907s53
2RE8|1|B|C|9492RE8|1|B|C|9490BPh
2RE8|1|B|C|9492RE8|1|B|G|950s35
2RE8|1|B|C|9492RE8|1|B|G|965cWW
2RE8|1|B|C|9562RE8|1|B|C|9560BPh
2RE8|1|B|C|9562RE8|1|B|G|919cWW
2RE8|1|B|C|9562RE8|1|B|G|957s35
2RE8|1|B|C|9612RE8|1|B|A|958s53
2RE8|1|B|C|9612RE8|1|B|C|9610BPh
2RE8|1|B|C|9612RE8|1|B|C|962s35
2RE8|1|B|C|9612RE8|1|B|G|953cWW
2RE8|1|B|C|9612RE8|1|B|U|9607BPh
2RE8|1|B|C|9622RE8|1|B|C|961s53
2RE8|1|B|C|9622RE8|1|B|C|9620BPh
2RE8|1|B|C|9622RE8|1|B|G|952cWW
2RE8|1|B|C|9622RE8|1|B|G|953s55
2RE8|1|B|C|9622RE8|1|B|U|963s35
2RE8|1|B|C|9642RE8|1|B|A|951ns55
2RE8|1|B|C|9642RE8|1|B|C|9640BPh
2RE8|1|B|C|9642RE8|1|B|G|950cWW
2RE8|1|B|C|9642RE8|1|B|G|965s35
2RE8|1|B|C|9642RE8|1|B|U|963s53
2RE8|1|B|C|9682RE8|1|B|A|967s53
2RE8|1|B|C|9682RE8|1|B|C|9680BPh
2RE8|1|B|C|9682RE8|1|B|C|969s35
2RE8|1|B|C|9682RE8|1|B|G|905cWW
2RE8|1|B|C|9692RE8|1|B|C|968s53
2RE8|1|B|C|9692RE8|1|B|C|9690BPh
2RE8|1|B|C|9692RE8|1|B|C|970s35
2RE8|1|B|C|9692RE8|1|B|G|904cWW
2RE8|1|B|C|9692RE8|1|B|G|905s55
2RE8|1|B|C|9702RE8|1|B|C|969s53
2RE8|1|B|C|9702RE8|1|B|C|9700BPh
2RE8|1|B|C|9702RE8|1|B|C|971s35
2RE8|1|B|C|9702RE8|1|B|G|903cWW
2RE8|1|B|C|9702RE8|1|B|G|904s55
2RE8|1|B|C|9712RE8|1|B|C|970s53
2RE8|1|B|C|9712RE8|1|B|C|9710BPh
2RE8|1|B|C|9712RE8|1|B|G|902cWW
2RE8|1|B|C|9712RE8|1|B|G|903s55
2RE8|1|B|C|9742RE8|1|B|C|9740BPh
2RE8|1|B|C|9752RE8|1|B|A|976s35
2RE8|1|B|C|9752RE8|1|B|G|973s55
2RE8|1|B|G|9022RE8|1|B|C|971cWW
2RE8|1|B|G|9022RE8|1|B|G|9020BPh
2RE8|1|B|G|9022RE8|1|B|G|903s35
2RE8|1|B|G|9032RE8|1|B|C|970cWW
2RE8|1|B|G|9032RE8|1|B|C|971s55
2RE8|1|B|G|9032RE8|1|B|G|902s53
2RE8|1|B|G|9032RE8|1|B|G|9030BPh
2RE8|1|B|G|9032RE8|1|B|G|904s35
2RE8|1|B|G|9042RE8|1|B|C|969cWW
2RE8|1|B|G|9042RE8|1|B|C|970s55
2RE8|1|B|G|9042RE8|1|B|G|903s53
2RE8|1|B|G|9042RE8|1|B|G|9040BPh
2RE8|1|B|G|9042RE8|1|B|G|905s35
2RE8|1|B|G|9052RE8|1|B|C|968cWW
2RE8|1|B|G|9052RE8|1|B|C|969s55
2RE8|1|B|G|9052RE8|1|B|G|904s53
2RE8|1|B|G|9052RE8|1|B|U|906s35
2RE8|1|B|G|9102RE8|1|B|A|926s55
2RE8|1|B|G|9102RE8|1|B|C|911s35
2RE8|1|B|G|9102RE8|1|B|C|925cWW
2RE8|1|B|G|9102RE8|1|B|G|910n0BP
2RE8|1|B|G|9152RE8|1|B|A|914s53
2RE8|1|B|G|9152RE8|1|B|A|921ncSS
2RE8|1|B|G|9152RE8|1|B|A|959s35
2RE8|1|B|G|9152RE8|1|B|C|948tWW
2RE8|1|B|G|9152RE8|1|B|G|915n0BP
2RE8|1|B|G|9152RE8|1|B|U|908s55
2RE8|1|B|G|9182RE8|1|B|A|958s55n1BP
2RE8|1|B|G|9182RE8|1|B|G|918n0BP
2RE8|1|B|G|9182RE8|1|B|G|957s33
2RE8|1|B|G|9182RE8|1|B|U|955ntWS
2RE8|1|B|G|9192RE8|1|B|C|956cWW
2RE8|1|B|G|9192RE8|1|B|G|9190BPh
2RE8|1|B|G|9192RE8|1|B|G|957s55
2RE8|1|B|G|9192RE8|1|B|U|920
2RE8|1|B|G|9232RE8|1|B|A|913ns55
2RE8|1|B|G|9232RE8|1|B|A|922s53
2RE8|1|B|G|9232RE8|1|B|C|909ntHH
2RE8|1|B|G|9232RE8|1|B|C|912cWW
2RE8|1|B|G|9232RE8|1|B|G|9230BPh
2RE8|1|B|G|9232RE8|1|B|G|924s35
2RE8|1|B|G|9242RE8|1|B|C|911cWW
2RE8|1|B|G|9242RE8|1|B|C|912s55
2RE8|1|B|G|9242RE8|1|B|C|925s35
2RE8|1|B|G|9242RE8|1|B|G|923s53
2RE8|1|B|G|9242RE8|1|B|G|9240BPh
2RE8|1|B|G|9292RE8|1|B|C|928s53
2RE8|1|B|G|9292RE8|1|B|C|941cWW
2RE8|1|B|G|9292RE8|1|B|G|929n0BP
2RE8|1|B|G|9292RE8|1|B|G|930s35
2RE8|1|B|G|9292RE8|1|B|G|942s55
2RE8|1|B|G|9302RE8|1|B|A|931s35
2RE8|1|B|G|9302RE8|1|B|C|940cWW
2RE8|1|B|G|9302RE8|1|B|C|941s55
2RE8|1|B|G|9302RE8|1|B|G|929s53
2RE8|1|B|G|9302RE8|1|B|G|9300BPh
2RE8|1|B|G|9362RE8|1|B|G|9360BPh
2RE8|1|B|G|9422RE8|1|B|C|928cWW
2RE8|1|B|G|9422RE8|1|B|C|941ns53
2RE8|1|B|G|9422RE8|1|B|G|929s55
2RE8|1|B|G|9422RE8|1|B|G|9420BPh
2RE8|1|B|G|9422RE8|1|B|G|943s35
2RE8|1|B|G|9432RE8|1|B|C|927cWW
2RE8|1|B|G|9432RE8|1|B|C|928s55
2RE8|1|B|G|9432RE8|1|B|C|944s35
2RE8|1|B|G|9432RE8|1|B|G|942s53
2RE8|1|B|G|9432RE8|1|B|G|9430BPh
2RE8|1|B|G|9502RE8|1|B|A|951s35
2RE8|1|B|G|9502RE8|1|B|C|949s53
2RE8|1|B|G|9502RE8|1|B|C|964cWW
2RE8|1|B|G|9502RE8|1|B|G|9500BPh
2RE8|1|B|G|9502RE8|1|B|G|965s55
2RE8|1|B|G|9522RE8|1|B|A|951s53
2RE8|1|B|G|9522RE8|1|B|C|962cWW
2RE8|1|B|G|9522RE8|1|B|G|952n0BP
2RE8|1|B|G|9522RE8|1|B|G|953s35
2RE8|1|B|G|9522RE8|1|B|U|963s55
2RE8|1|B|G|9532RE8|1|B|C|961cWW
2RE8|1|B|G|9532RE8|1|B|C|962s55
2RE8|1|B|G|9532RE8|1|B|G|952s53
2RE8|1|B|G|9532RE8|1|B|G|9530BPh
2RE8|1|B|G|9532RE8|1|B|U|954s35
2RE8|1|B|G|9572RE8|1|B|C|956s53
2RE8|1|B|G|9572RE8|1|B|G|918s33
2RE8|1|B|G|9572RE8|1|B|G|919s55n3BP
2RE8|1|B|G|9572RE8|1|B|G|9570BPh
2RE8|1|B|G|9572RE8|1|B|U|920
2RE8|1|B|G|9652RE8|1|B|C|949cWW
2RE8|1|B|G|9652RE8|1|B|C|964s53
2RE8|1|B|G|9652RE8|1|B|G|950s55
2RE8|1|B|G|9652RE8|1|B|G|9650BPh
2RE8|1|B|G|9652RE8|1|B|U|966s35
2RE8|1|B|G|9732RE8|1|B|A|9721BPh
2RE8|1|B|G|9732RE8|1|B|C|975s55n0BP
2RE8|1|B|U|9062RE8|1|B|A|907s35
2RE8|1|B|U|9062RE8|1|B|A|967cWW
2RE8|1|B|U|9062RE8|1|B|G|905s53
2RE8|1|B|U|9062RE8|1|B|U|9060BPh
2RE8|1|B|U|9082RE8|1|B|A|913s33
2RE8|1|B|U|9082RE8|1|B|A|914tWH
2RE8|1|B|U|9082RE8|1|B|A|921tSS
2RE8|1|B|U|9082RE8|1|B|G|915s55
2RE8|1|B|U|9082RE8|1|B|U|9080BPh
2RE8|1|B|U|9202RE8|1|B|G|919
2RE8|1|B|U|9202RE8|1|B|G|957
2RE8|1|B|U|9202RE8|1|B|U|920n0BP
2RE8|1|B|U|9322RE8|1|B|A|931s53
2RE8|1|B|U|9322RE8|1|B|U|9320BPh
2RE8|1|B|U|9322RE8|1|B|U|933s35
2RE8|1|B|U|9322RE8|1|B|U|938ncWW
2RE8|1|B|U|9332RE8|1|B|A|937ntSH
2RE8|1|B|U|9332RE8|1|B|U|932s53
2RE8|1|B|U|9332RE8|1|B|U|9330BPh
2RE8|1|B|U|9352RE8|1|B|A|937s35
2RE8|1|B|U|9352RE8|1|B|U|9350BPh
2RE8|1|B|U|9382RE8|1|B|A|937s53n9BP
2RE8|1|B|U|9382RE8|1|B|U|932ncWW
2RE8|1|B|U|9382RE8|1|B|U|9380BPh
2RE8|1|B|U|9382RE8|1|B|U|939s35
2RE8|1|B|U|9392RE8|1|B|A|931cWW
2RE8|1|B|U|9392RE8|1|B|C|940s35
2RE8|1|B|U|9392RE8|1|B|U|938s53
2RE8|1|B|U|9392RE8|1|B|U|9390BPh
2RE8|1|B|U|9462RE8|1|B|U|947
2RE8|1|B|U|9472RE8|1|B|A|921ns55
2RE8|1|B|U|9472RE8|1|B|U|946
2RE8|1|B|U|9472RE8|1|B|U|9470BPh
2RE8|1|B|U|9542RE8|1|B|A|958ntWH
2RE8|1|B|U|9542RE8|1|B|G|953s53
2RE8|1|B|U|9542RE8|1|B|U|9540BPh
2RE8|1|B|U|9542RE8|1|B|U|955s35
2RE8|1|B|U|9552RE8|1|B|A|958ns555BPh
2RE8|1|B|U|9552RE8|1|B|G|918ntSW
2RE8|1|B|U|9552RE8|1|B|U|954s53
2RE8|1|B|U|9552RE8|1|B|U|9550BPh
2RE8|1|B|U|9602RE8|1|B|A|958
2RE8|1|B|U|9602RE8|1|B|A|959s53n9BP
2RE8|1|B|U|9602RE8|1|B|U|9600BPh
2RE8|1|B|U|9632RE8|1|B|A|951cWW
2RE8|1|B|U|9632RE8|1|B|C|962s53
2RE8|1|B|U|9632RE8|1|B|C|964s35
2RE8|1|B|U|9632RE8|1|B|G|952s55
2RE8|1|B|U|9632RE8|1|B|U|9630BPh
2RE8|1|B|U|9662RE8|1|B|A|907cWW
2RE8|1|B|U|9662RE8|1|B|A|967s35
2RE8|1|B|U|9662RE8|1|B|G|965s53
2RE8|1|B|U|9662RE8|1|B|U|9660BPh


Base-PairsCount (27)Relative Frequency
cWW210.778
tWW20.074
tWH10.037
cWS10.037
tHS10.037
tSS10.037
Base-PhosphateCount (58)Relative Frequency
1BPh10.017
2BPh10.017
5BPh10.017
7BPh10.017
0BPh540.931
Base-StackingCount (36)Relative Frequency
s3330.083
s53140.389
s55190.528

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)