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As of 11-Dec-2019 number of released structures: 10507
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NDB ID: 2RQJ  PDB ID: 2RQJ 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
2RQJ|1|A|A|122RQJ|1|A|G|11s53
2RQJ|1|A|A|122RQJ|1|A|G|2cSH
2RQJ|1|A|A|122RQJ|1|A|G|8s53
2RQJ|1|A|A|32RQJ|1|A|G|1tHSn7BP
2RQJ|1|A|A|32RQJ|1|A|G|2ns55n6BP
2RQJ|1|A|A|32RQJ|1|A|G|4
2RQJ|1|A|A|32RQJ|1|B|A|15s33
2RQJ|1|A|A|62RQJ|1|A|G|4
2RQJ|1|A|A|62RQJ|1|A|G|5
2RQJ|1|A|A|62RQJ|1|B|G|23
2RQJ|1|A|A|92RQJ|1|A|G|7tHS
2RQJ|1|A|A|92RQJ|1|A|G|8ns55
2RQJ|1|A|A|92RQJ|1|B|A|21s33
2RQJ|1|A|G|12RQJ|1|A|A|3tSH
2RQJ|1|A|G|12RQJ|1|A|G|1n0BP
2RQJ|1|A|G|12RQJ|1|A|G|10cHW
2RQJ|1|A|G|12RQJ|1|A|G|11s35
2RQJ|1|A|G|12RQJ|1|A|G|2s35
2RQJ|1|A|G|12RQJ|1|A|G|4ncWH
2RQJ|1|A|G|12RQJ|1|B|A|18
2RQJ|1|A|G|12RQJ|1|B|G|13s55
2RQJ|1|A|G|12RQJ|1|B|G|16s55
2RQJ|1|A|G|102RQJ|1|A|G|1cWH
2RQJ|1|A|G|102RQJ|1|A|G|11s35
2RQJ|1|A|G|102RQJ|1|A|G|7cHW
2RQJ|1|A|G|102RQJ|1|A|G|8s35
2RQJ|1|A|G|102RQJ|1|B|G|16s55
2RQJ|1|A|G|102RQJ|1|B|G|19s55
2RQJ|1|A|G|112RQJ|1|A|A|12s35
2RQJ|1|A|G|112RQJ|1|A|G|1s53
2RQJ|1|A|G|112RQJ|1|A|G|10s53
2RQJ|1|A|G|112RQJ|1|A|G|110BPh
2RQJ|1|A|G|112RQJ|1|A|G|2cWH
2RQJ|1|A|G|112RQJ|1|A|G|8cHW
2RQJ|1|A|G|112RQJ|1|B|A|18
2RQJ|1|A|G|22RQJ|1|A|A|12cHS
2RQJ|1|A|G|22RQJ|1|A|A|3ns55
2RQJ|1|A|G|22RQJ|1|A|G|1s53
2RQJ|1|A|G|22RQJ|1|A|G|11cHW
2RQJ|1|A|G|22RQJ|1|A|G|20BPh
2RQJ|1|A|G|22RQJ|1|A|G|4s53
2RQJ|1|A|G|22RQJ|1|A|G|5cWH
2RQJ|1|A|G|22RQJ|1|A|G|8ntWW
2RQJ|1|A|G|42RQJ|1|A|G|1ncHW
2RQJ|1|A|G|42RQJ|1|A|G|2s35
2RQJ|1|A|G|42RQJ|1|A|G|5s35
2RQJ|1|A|G|42RQJ|1|A|G|7cWH
2RQJ|1|A|G|42RQJ|1|B|G|13s55
2RQJ|1|A|G|42RQJ|1|B|G|22s55
2RQJ|1|A|G|52RQJ|1|A|G|2cHW
2RQJ|1|A|G|52RQJ|1|A|G|4s53
2RQJ|1|A|G|52RQJ|1|A|G|50BPh
2RQJ|1|A|G|52RQJ|1|A|G|7s53
2RQJ|1|A|G|52RQJ|1|A|G|8ncWH
2RQJ|1|A|G|72RQJ|1|A|A|6
2RQJ|1|A|G|72RQJ|1|A|A|9tSH
2RQJ|1|A|G|72RQJ|1|A|G|10cWH
2RQJ|1|A|G|72RQJ|1|A|G|4cHW
2RQJ|1|A|G|72RQJ|1|A|G|5s35
2RQJ|1|A|G|72RQJ|1|A|G|8s35
2RQJ|1|A|G|72RQJ|1|B|G|19s55
2RQJ|1|A|G|72RQJ|1|B|G|22s55
2RQJ|1|A|G|82RQJ|1|A|A|12s35
2RQJ|1|A|G|82RQJ|1|A|A|9ns55
2RQJ|1|A|G|82RQJ|1|A|G|10s53
2RQJ|1|A|G|82RQJ|1|A|G|11cWH
2RQJ|1|A|G|82RQJ|1|A|G|2ntWW
2RQJ|1|A|G|82RQJ|1|A|G|5ncHW
2RQJ|1|A|G|82RQJ|1|A|G|7s53
2RQJ|1|B|A|152RQJ|1|A|A|3s33
2RQJ|1|B|A|152RQJ|1|B|G|13tHS
2RQJ|1|B|A|152RQJ|1|B|G|14ns55n6BP
2RQJ|1|B|A|152RQJ|1|B|G|16
2RQJ|1|B|A|182RQJ|1|A|G|1
2RQJ|1|B|A|182RQJ|1|A|G|11
2RQJ|1|B|A|182RQJ|1|B|G|16
2RQJ|1|B|A|182RQJ|1|B|G|17
2RQJ|1|B|A|212RQJ|1|A|A|9s33
2RQJ|1|B|A|212RQJ|1|B|G|19tHS
2RQJ|1|B|A|212RQJ|1|B|G|20ns55
2RQJ|1|B|A|242RQJ|1|B|A|240BPh
2RQJ|1|B|A|242RQJ|1|B|G|20s53
2RQJ|1|B|A|242RQJ|1|B|G|23s53
2RQJ|1|B|G|132RQJ|1|A|G|1s55
2RQJ|1|B|G|132RQJ|1|A|G|4s55
2RQJ|1|B|G|132RQJ|1|B|A|15tSH
2RQJ|1|B|G|132RQJ|1|B|G|14s35
2RQJ|1|B|G|132RQJ|1|B|G|16ncWH
2RQJ|1|B|G|132RQJ|1|B|G|22cHW
2RQJ|1|B|G|132RQJ|1|B|G|23s35
2RQJ|1|B|G|142RQJ|1|B|A|15ns55
2RQJ|1|B|G|142RQJ|1|B|G|13s53
2RQJ|1|B|G|142RQJ|1|B|G|14n0BP
2RQJ|1|B|G|142RQJ|1|B|G|16s53
2RQJ|1|B|G|142RQJ|1|B|G|17cWH
2RQJ|1|B|G|142RQJ|1|B|G|20ntWW
2RQJ|1|B|G|142RQJ|1|B|G|23cHW
2RQJ|1|B|G|162RQJ|1|A|G|1s55
2RQJ|1|B|G|162RQJ|1|A|G|10s55
2RQJ|1|B|G|162RQJ|1|B|G|13ncHW
2RQJ|1|B|G|162RQJ|1|B|G|14s35
2RQJ|1|B|G|162RQJ|1|B|G|17s35
2RQJ|1|B|G|162RQJ|1|B|G|19cWH
2RQJ|1|B|G|162RQJ|1|B|G|22ntWW
2RQJ|1|B|G|172RQJ|1|B|G|14cHW
2RQJ|1|B|G|172RQJ|1|B|G|16s53
2RQJ|1|B|G|172RQJ|1|B|G|170BPh
2RQJ|1|B|G|172RQJ|1|B|G|19s53
2RQJ|1|B|G|172RQJ|1|B|G|20ncWH
2RQJ|1|B|G|192RQJ|1|A|G|10s55
2RQJ|1|B|G|192RQJ|1|A|G|7s55
2RQJ|1|B|G|192RQJ|1|B|A|18
2RQJ|1|B|G|192RQJ|1|B|A|21tSH
2RQJ|1|B|G|192RQJ|1|B|G|16cHW
2RQJ|1|B|G|192RQJ|1|B|G|17s35
2RQJ|1|B|G|192RQJ|1|B|G|20s35
2RQJ|1|B|G|192RQJ|1|B|G|22cWH
2RQJ|1|B|G|202RQJ|1|B|A|21ns55
2RQJ|1|B|G|202RQJ|1|B|A|24s35
2RQJ|1|B|G|202RQJ|1|B|G|14ntWW
2RQJ|1|B|G|202RQJ|1|B|G|17ncHW
2RQJ|1|B|G|202RQJ|1|B|G|19s53
2RQJ|1|B|G|202RQJ|1|B|G|20n0BP
2RQJ|1|B|G|202RQJ|1|B|G|22s53
2RQJ|1|B|G|202RQJ|1|B|G|23cWHn1BP
2RQJ|1|B|G|222RQJ|1|A|G|4s55
2RQJ|1|B|G|222RQJ|1|A|G|7s55
2RQJ|1|B|G|222RQJ|1|B|G|13cWH
2RQJ|1|B|G|222RQJ|1|B|G|16ntWW
2RQJ|1|B|G|222RQJ|1|B|G|19cHW
2RQJ|1|B|G|222RQJ|1|B|G|20s35
2RQJ|1|B|G|222RQJ|1|B|G|23s35
2RQJ|1|B|G|232RQJ|1|A|A|6
2RQJ|1|B|G|232RQJ|1|B|A|24s35
2RQJ|1|B|G|232RQJ|1|B|G|13s53
2RQJ|1|B|G|232RQJ|1|B|G|14cWH
2RQJ|1|B|G|232RQJ|1|B|G|20cHW
2RQJ|1|B|G|232RQJ|1|B|G|22s53
2RQJ|1|B|G|232RQJ|1|B|G|23n0BP


Base-PairsCount (17)Relative Frequency
cWH120.706
cHS10.059
tHS40.235
Base-PhosphateCount (5)Relative Frequency
0BPh51.000
Base-StackingCount (19)Relative Frequency
s3320.105
s5390.474
s5580.421

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)