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NDB ID: 2TOB  PDB ID: 2TOB 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
2TOB|1|A|A|132TOB|1|A|A|130BPh
2TOB|1|A|A|132TOB|1|A|G|14s35
2TOB|1|A|A|132TOB|1|A|U|12ns33
2TOB|1|A|A|172TOB|1|A|A|170BPh
2TOB|1|A|A|172TOB|1|A|A|18s35
2TOB|1|A|A|172TOB|1|A|U|10cWW
2TOB|1|A|A|172TOB|1|A|U|11s55
2TOB|1|A|A|172TOB|1|A|U|16s53
2TOB|1|A|A|182TOB|1|A|A|17s53
2TOB|1|A|A|182TOB|1|A|A|18n0BP
2TOB|1|A|A|182TOB|1|A|G|9cWW
2TOB|1|A|A|182TOB|1|A|U|10ns55
2TOB|1|A|A|182TOB|1|A|U|19s35
2TOB|1|A|A|212TOB|1|A|A|210BPh
2TOB|1|A|A|212TOB|1|A|G|20s53
2TOB|1|A|A|212TOB|1|A|G|22s35
2TOB|1|A|A|212TOB|1|A|U|6cWW
2TOB|1|A|A|212TOB|1|A|U|7ns55
2TOB|1|A|A|42TOB|1|A|C|5s35
2TOB|1|A|A|42TOB|1|A|U|23cWW
2TOB|1|A|C|52TOB|1|A|A|4s53
2TOB|1|A|C|52TOB|1|A|C|50BPh
2TOB|1|A|C|52TOB|1|A|G|22cWW
2TOB|1|A|C|52TOB|1|A|U|6s35
2TOB|1|A|G|142TOB|1|A|A|13s53
2TOB|1|A|G|142TOB|1|A|U|16s35n1BP
2TOB|1|A|G|152TOB|1|A|U|16
2TOB|1|A|G|202TOB|1|A|A|21s35
2TOB|1|A|G|202TOB|1|A|G|20n0BP
2TOB|1|A|G|202TOB|1|A|G|8s55
2TOB|1|A|G|202TOB|1|A|U|19s53
2TOB|1|A|G|202TOB|1|A|U|7cWW
2TOB|1|A|G|222TOB|1|A|A|21s53
2TOB|1|A|G|222TOB|1|A|C|5cWW
2TOB|1|A|G|222TOB|1|A|G|22n0BP
2TOB|1|A|G|222TOB|1|A|U|23s35
2TOB|1|A|G|222TOB|1|A|U|6s55
2TOB|1|A|G|82TOB|1|A|G|20s55
2TOB|1|A|G|82TOB|1|A|G|8n0BP
2TOB|1|A|G|82TOB|1|A|G|9s35
2TOB|1|A|G|82TOB|1|A|U|19ncWW
2TOB|1|A|G|82TOB|1|A|U|7
2TOB|1|A|G|92TOB|1|A|A|18cWW
2TOB|1|A|G|92TOB|1|A|G|8s53
2TOB|1|A|G|92TOB|1|A|U|10s35
2TOB|1|A|U|102TOB|1|A|A|17cWW
2TOB|1|A|U|102TOB|1|A|A|18ns55
2TOB|1|A|U|102TOB|1|A|G|9s53
2TOB|1|A|U|102TOB|1|A|U|10n9BP
2TOB|1|A|U|102TOB|1|A|U|11s35
2TOB|1|A|U|112TOB|1|A|A|17s55
2TOB|1|A|U|112TOB|1|A|U|10s53
2TOB|1|A|U|112TOB|1|A|U|110BPh
2TOB|1|A|U|112TOB|1|A|U|12s35
2TOB|1|A|U|112TOB|1|A|U|16cWW
2TOB|1|A|U|122TOB|1|A|A|13ns33
2TOB|1|A|U|122TOB|1|A|G|155BPh
2TOB|1|A|U|122TOB|1|A|U|11s53
2TOB|1|A|U|122TOB|1|A|U|16s55
2TOB|1|A|U|162TOB|1|A|A|17s35
2TOB|1|A|U|162TOB|1|A|G|14s53
2TOB|1|A|U|162TOB|1|A|G|15n9BP
2TOB|1|A|U|162TOB|1|A|U|11cWW
2TOB|1|A|U|162TOB|1|A|U|12s55
2TOB|1|A|U|162TOB|1|A|U|160BPh
2TOB|1|A|U|192TOB|1|A|A|18s53
2TOB|1|A|U|192TOB|1|A|G|20s35
2TOB|1|A|U|192TOB|1|A|G|8ncWW
2TOB|1|A|U|192TOB|1|A|U|19n0BP
2TOB|1|A|U|192TOB|1|A|U|7ntHW
2TOB|1|A|U|232TOB|1|A|A|4cWW
2TOB|1|A|U|232TOB|1|A|G|22s53
2TOB|1|A|U|232TOB|1|A|U|230BPh
2TOB|1|A|U|62TOB|1|A|A|21cWW
2TOB|1|A|U|62TOB|1|A|C|5s53
2TOB|1|A|U|62TOB|1|A|G|22s55
2TOB|1|A|U|62TOB|1|A|U|60BPh
2TOB|1|A|U|62TOB|1|A|U|7s35
2TOB|1|A|U|72TOB|1|A|A|21ns55
2TOB|1|A|U|72TOB|1|A|G|20cWW
2TOB|1|A|U|72TOB|1|A|U|19ntWH
2TOB|1|A|U|72TOB|1|A|U|6s539BPh
2TOB|1|A|U|72TOB|1|A|U|70BPh


Base-PairsCount (7)Relative Frequency
cWW71.000
Base-PhosphateCount (11)Relative Frequency
5BPh10.091
9BPh10.091
0BPh90.818
Base-StackingCount (7)Relative Frequency
s5330.429
s5540.571

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)