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NDB ID: NA0011  PDB ID: 2VUQ 

RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
2VUQ|1|A|A|32VUQ|1|A|A|30BPh
2VUQ|1|A|A|32VUQ|1|A|C|2s53
2VUQ|1|A|A|32VUQ|1|A|U|4s35
2VUQ|1|A|A|32VUQ|1|B|G|71s55
2VUQ|1|A|A|32VUQ|1|B|U|70cWW
2VUQ|1|A|C|22VUQ|1|A|A|3s35
2VUQ|1|A|C|22VUQ|1|A|C|20BPh
2VUQ|1|A|C|22VUQ|1|A|G|1s53
2VUQ|1|A|C|22VUQ|1|B|G|71cWW
2VUQ|1|A|G|12VUQ|1|A|C|2s35
2VUQ|1|A|G|12VUQ|1|A|G|10BPh
2VUQ|1|A|G|12VUQ|1|B|C|72cWW
2VUQ|1|A|G|62VUQ|1|A|G|60BPh
2VUQ|1|A|G|62VUQ|1|A|G|7s35
2VUQ|1|A|G|62VUQ|1|A|U|5s53
2VUQ|1|A|G|62VUQ|1|B|A|68s55
2VUQ|1|A|G|62VUQ|1|B|C|67cWW
2VUQ|1|A|G|72VUQ|1|A|G|6s53
2VUQ|1|A|G|72VUQ|1|A|G|70BPh
2VUQ|1|A|G|72VUQ|1|B|C|66cWW
2VUQ|1|A|G|72VUQ|1|B|C|67s55
2VUQ|1|A|U|42VUQ|1|A|A|3s53
2VUQ|1|A|U|42VUQ|1|A|U|40BPh
2VUQ|1|A|U|42VUQ|1|A|U|5s35
2VUQ|1|A|U|42VUQ|1|B|A|69cWW
2VUQ|1|A|U|52VUQ|1|A|G|6s35
2VUQ|1|A|U|52VUQ|1|A|U|4s53
2VUQ|1|A|U|52VUQ|1|A|U|50BPh
2VUQ|1|A|U|52VUQ|1|B|A|68cWW
2VUQ|1|A|U|52VUQ|1|B|A|69s55
2VUQ|1|B|A|682VUQ|1|A|G|6s55
2VUQ|1|B|A|682VUQ|1|A|U|5cWW
2VUQ|1|B|A|682VUQ|1|B|A|680BPh
2VUQ|1|B|A|682VUQ|1|B|A|69s35
2VUQ|1|B|A|682VUQ|1|B|C|67s53
2VUQ|1|B|A|692VUQ|1|A|U|4cWW
2VUQ|1|B|A|692VUQ|1|A|U|5s55
2VUQ|1|B|A|692VUQ|1|B|A|68s53
2VUQ|1|B|A|692VUQ|1|B|A|690BPh
2VUQ|1|B|A|692VUQ|1|B|U|70s35
2VUQ|1|B|C|662VUQ|1|A|G|7cWW
2VUQ|1|B|C|662VUQ|1|B|C|660BPh
2VUQ|1|B|C|662VUQ|1|B|C|67s35
2VUQ|1|B|C|672VUQ|1|A|G|6cWW
2VUQ|1|B|C|672VUQ|1|A|G|7s55
2VUQ|1|B|C|672VUQ|1|B|A|68s35
2VUQ|1|B|C|672VUQ|1|B|C|66s53
2VUQ|1|B|C|672VUQ|1|B|C|670BPh
2VUQ|1|B|C|722VUQ|1|A|G|1cWW
2VUQ|1|B|C|722VUQ|1|B|C|720BPh
2VUQ|1|B|C|722VUQ|1|B|G|71s53
2VUQ|1|B|G|712VUQ|1|A|A|3s55
2VUQ|1|B|G|712VUQ|1|A|C|2cWW
2VUQ|1|B|G|712VUQ|1|B|C|72s35
2VUQ|1|B|G|712VUQ|1|B|G|710BPh
2VUQ|1|B|G|712VUQ|1|B|U|70s53
2VUQ|1|B|U|702VUQ|1|A|A|3cWW
2VUQ|1|B|U|702VUQ|1|B|A|69s53
2VUQ|1|B|U|702VUQ|1|B|G|71s35
2VUQ|1|B|U|702VUQ|1|B|U|700BPh


Base-PairsCount (7)Relative Frequency
cWW71.000
Base-PhosphateCount (14)Relative Frequency
0BPh141.000
Base-StackingCount (10)Relative Frequency
s5360.600
s5540.400

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)

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