A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: DDH071  PDB ID: 316D 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12A_DA2:DT15_B-0.062-0.112-0.0321.519-2.56-7.728
13A_DA3:DT14_B-0.251-0.1720.1240.642-4.678-4.552
15A_DC5:DG12_B0.203-0.2170.574-4.1073.146-1.472
18A_DC8:DG9_B0.061-0.1480.0765.763-5.473-1.881
11A_DG1:DC16_B-0.065-0.141-0.0273.115-2.871-1.339
14A_DG4:DC13_B-0.142-0.1790.208-0.0783.583-3.301
16A_DT6:DA11_B-0.051-0.066-0.1031.7180.253-6.493
17A_DT7:DA10_B0.056-0.098-0.013-4.152-2.008-7.738

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.