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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 12-Aug-2022 number of released structures: 12231
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NDB ID:
PR0382
PDB ID:
3A2K
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
3
C_A3:U71_C
0.031
-0.278
0.756
0.401
3.606
-0.573
1
17
C_A24:U12_C
0.322
0.342
0.987
7.416
3.277
1.512
1
22
C_A29:U43_C
-0.065
0.115
-0.291
0.731
-10.375
0.627
1
10
C_A52:U64_C
-1.063
0.151
0.768
13.024
25.855
2.984
1
4
C_C4:G70_C
0.044
0.148
0.772
-0.962
-6.555
10.207
1
5
C_C5:G69_C
0.666
-0.162
-0.629
9.206
-22.003
2.294
1
19
C_C26:G10_C
0.314
-0.285
-0.404
-7.765
-1.748
-7.102
1
23
C_C30:G42_C
1.001
0.313
0.717
-7.175
-22.697
12.229
1
1
C_G1:C73_C
-0.741
-0.149
-0.767
-14.782
-10.089
10.748
1
2
C_G2:C72_C
0.804
-0.027
-0.05
-7.432
-6.838
1.337
1
20
C_G19:C57_C
-0.316
1.056
-0.864
-33.341
-25.196
23.188
1
16
C_G23:C13_C
-1.146
0.097
0.408
0.049
-7.333
-0.831
1
18
C_G25:C11_C
-0.469
-0.321
-0.492
1.309
-23.754
0.544
1
21
C_G28:C44_C
-0.312
-0.048
1.215
24.254
-21.405
-3.521
1
24
C_G31:C41_C
-0.737
-0.261
0.603
7.442
3.728
1.06
1
25
C_G32:C40_C
-1.335
0.217
-0.326
-9.174
-5.08
3.651
1
8
C_G50:C66_C
-0.361
-0.144
-0.519
-4.405
-19.423
-3.804
1
11
C_G53:C63_C
0.225
-0.058
-1.891
-28.439
-3.57
-3.396
1
12
C_G54:C62_C
0.819
0.557
1.452
3.949
4.826
10.257
1
6
C_U6:A68_C
-0.456
0.078
0.37
-18.242
-31.443
1.381
1
7
C_U7:A67_C
-1.004
0.264
0.507
8.323
-18.204
-5.665
1
15
C_U8:A14_C
4.689
-2.817
1.128
-10.169
46.462
-85.885
1
9
C_U51:A65_C
0.242
-0.043
0.15
-11.12
-8.312
-2.409
1
13
C_U55:A59_C
3.8
-1.843
0.036
17.054
-26.699
-83.585
1
14
C_U56:G18_C
0.533
-7.116
-0.409
21.342
-3.406
-98.686
1
28
D_A3:U71_D
0.003
0.03
0.263
7.795
5.457
6.846
1
49
D_A14:A22_D
-6.74
-0.869
-0.846
-17.724
-11.237
48.48
1
35
D_A52:U64_D
0.007
0.401
0.264
2.748
-13.225
11.252
1
29
D_C4:G70_D
-0.029
-0.213
0.264
-5.479
-7.58
2.77
1
30
D_C5:G69_D
0.618
-0.476
0.801
0.138
-10.921
0.545
1
46
D_C11:G25_D
0.384
-0.139
-0.122
10.747
-23.432
6.134
1
48
D_C13:G23_D
1.16
0.01
0.082
0.8
-15.301
5.356
1
40
D_C40:G32_D
0.876
0.012
-1.493
13.947
-12.875
7.441
1
41
D_C41:G31_D
0.134
0.001
0.569
-7.999
8.838
-0.374
1
44
D_C44:G28_D
0.349
-0.061
0.513
-20.656
-22.522
6.082
1
26
D_G1:C73_D
-0.089
0.102
-1.074
-4.754
-15.774
0.964
1
27
D_G2:C72_D
0.207
-0.005
-0.089
-9.312
3.093
0.598
1
45
D_G10:C26_D
-0.595
-0.03
0.339
13.484
-0.017
8.22
1
50
D_G15:C49_D
0.274
2.704
-0.357
-1.033
-16.769
166.762
1
51
D_G19:C57_D
-0.257
0.646
-0.178
-26.914
-28.155
19.199
1
42
D_G42:C30_D
-1.812
0.336
0.459
-0.626
-24.945
12.83
1
33
D_G50:C66_D
-0.227
0.175
0.635
-12.35
-3.992
0.572
1
36
D_G53:C63_D
0.359
-0.028
-0.754
-11.046
-2.643
-3.732
1
37
D_G54:C62_D
0.312
0.107
0.371
-14.012
-0.144
5.14
1
31
D_U6:A68_D
-1.052
0.186
0.479
-34.345
-31.671
7.68
1
32
D_U7:A67_D
-1.029
0.188
-0.456
-0.846
-16.38
-5.737
1
47
D_U12:A24_D
0.214
-0.161
0.975
-14.352
3.97
-7.254
1
43
D_U43:A29_D
0.002
-0.104
-0.317
2.323
-17.981
-5.379
1
34
D_U51:A65_D
-0.337
0.01
0.243
-3.125
-14.306
0.53
1
38
D_U55:A59_D
3.007
-1.188
0.292
12.126
-0.939
-80.76
1
39
D_U56:G18_D
0.628
-6.484
0.369
14.978
4.239
-104.033
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.