A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 12-Aug-2022 number of released structures: 12231
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NDB ID: PR0382  PDB ID: 3A2K 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13C_A3:U71_C0.031-0.2780.7560.4013.606-0.573
117C_A24:U12_C0.3220.3420.9877.4163.2771.512
122C_A29:U43_C-0.0650.115-0.2910.731-10.3750.627
110C_A52:U64_C-1.0630.1510.76813.02425.8552.984
14C_C4:G70_C0.0440.1480.772-0.962-6.55510.207
15C_C5:G69_C0.666-0.162-0.6299.206-22.0032.294
119C_C26:G10_C0.314-0.285-0.404-7.765-1.748-7.102
123C_C30:G42_C1.0010.3130.717-7.175-22.69712.229
11C_G1:C73_C-0.741-0.149-0.767-14.782-10.08910.748
12C_G2:C72_C0.804-0.027-0.05-7.432-6.8381.337
120C_G19:C57_C-0.3161.056-0.864-33.341-25.19623.188
116C_G23:C13_C-1.1460.0970.4080.049-7.333-0.831
118C_G25:C11_C-0.469-0.321-0.4921.309-23.7540.544
121C_G28:C44_C-0.312-0.0481.21524.254-21.405-3.521
124C_G31:C41_C-0.737-0.2610.6037.4423.7281.06
125C_G32:C40_C-1.3350.217-0.326-9.174-5.083.651
18C_G50:C66_C-0.361-0.144-0.519-4.405-19.423-3.804
111C_G53:C63_C0.225-0.058-1.891-28.439-3.57-3.396
112C_G54:C62_C0.8190.5571.4523.9494.82610.257
16C_U6:A68_C-0.4560.0780.37-18.242-31.4431.381
17C_U7:A67_C-1.0040.2640.5078.323-18.204-5.665
115C_U8:A14_C4.689-2.8171.128-10.16946.462-85.885
19C_U51:A65_C0.242-0.0430.15-11.12-8.312-2.409
113C_U55:A59_C3.8-1.8430.03617.054-26.699-83.585
114C_U56:G18_C0.533-7.116-0.40921.342-3.406-98.686
128D_A3:U71_D0.0030.030.2637.7955.4576.846
149D_A14:A22_D-6.74-0.869-0.846-17.724-11.23748.48
135D_A52:U64_D0.0070.4010.2642.748-13.22511.252
129D_C4:G70_D-0.029-0.2130.264-5.479-7.582.77
130D_C5:G69_D0.618-0.4760.8010.138-10.9210.545
146D_C11:G25_D0.384-0.139-0.12210.747-23.4326.134
148D_C13:G23_D1.160.010.0820.8-15.3015.356
140D_C40:G32_D0.8760.012-1.49313.947-12.8757.441
141D_C41:G31_D0.1340.0010.569-7.9998.838-0.374
144D_C44:G28_D0.349-0.0610.513-20.656-22.5226.082
126D_G1:C73_D-0.0890.102-1.074-4.754-15.7740.964
127D_G2:C72_D0.207-0.005-0.089-9.3123.0930.598
145D_G10:C26_D-0.595-0.030.33913.484-0.0178.22
150D_G15:C49_D0.2742.704-0.357-1.033-16.769166.762
151D_G19:C57_D-0.2570.646-0.178-26.914-28.15519.199
142D_G42:C30_D-1.8120.3360.459-0.626-24.94512.83
133D_G50:C66_D-0.2270.1750.635-12.35-3.9920.572
136D_G53:C63_D0.359-0.028-0.754-11.046-2.643-3.732
137D_G54:C62_D0.3120.1070.371-14.012-0.1445.14
131D_U6:A68_D-1.0520.1860.479-34.345-31.6717.68
132D_U7:A67_D-1.0290.188-0.456-0.846-16.38-5.737
147D_U12:A24_D0.214-0.1610.975-14.3523.97-7.254
143D_U43:A29_D0.002-0.104-0.3172.323-17.981-5.379
134D_U51:A65_D-0.3370.010.243-3.125-14.3060.53
138D_U55:A59_D3.007-1.1880.29212.126-0.939-80.76
139D_U56:G18_D0.628-6.4840.36914.9784.239-104.033

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.