3A2K: Base Pair Morphology Parameters

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As of 12-Aug-2022 number of released structures: 12231

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NDB ID: PR0382 PDB ID: 3A2K

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	C_A3:U71_C	0.031	-0.278	0.756	0.401	3.606	-0.573
1	17	C_A24:U12_C	0.322	0.342	0.987	7.416	3.277	1.512
1	22	C_A29:U43_C	-0.065	0.115	-0.291	0.731	-10.375	0.627
1	10	C_A52:U64_C	-1.063	0.151	0.768	13.024	25.855	2.984
1	4	C_C4:G70_C	0.044	0.148	0.772	-0.962	-6.555	10.207
1	5	C_C5:G69_C	0.666	-0.162	-0.629	9.206	-22.003	2.294
1	19	C_C26:G10_C	0.314	-0.285	-0.404	-7.765	-1.748	-7.102
1	23	C_C30:G42_C	1.001	0.313	0.717	-7.175	-22.697	12.229
1	1	C_G1:C73_C	-0.741	-0.149	-0.767	-14.782	-10.089	10.748
1	2	C_G2:C72_C	0.804	-0.027	-0.05	-7.432	-6.838	1.337
1	20	C_G19:C57_C	-0.316	1.056	-0.864	-33.341	-25.196	23.188
1	16	C_G23:C13_C	-1.146	0.097	0.408	0.049	-7.333	-0.831
1	18	C_G25:C11_C	-0.469	-0.321	-0.492	1.309	-23.754	0.544
1	21	C_G28:C44_C	-0.312	-0.048	1.215	24.254	-21.405	-3.521
1	24	C_G31:C41_C	-0.737	-0.261	0.603	7.442	3.728	1.06
1	25	C_G32:C40_C	-1.335	0.217	-0.326	-9.174	-5.08	3.651
1	8	C_G50:C66_C	-0.361	-0.144	-0.519	-4.405	-19.423	-3.804
1	11	C_G53:C63_C	0.225	-0.058	-1.891	-28.439	-3.57	-3.396
1	12	C_G54:C62_C	0.819	0.557	1.452	3.949	4.826	10.257
1	6	C_U6:A68_C	-0.456	0.078	0.37	-18.242	-31.443	1.381
1	7	C_U7:A67_C	-1.004	0.264	0.507	8.323	-18.204	-5.665
1	15	C_U8:A14_C	4.689	-2.817	1.128	-10.169	46.462	-85.885
1	9	C_U51:A65_C	0.242	-0.043	0.15	-11.12	-8.312	-2.409
1	13	C_U55:A59_C	3.8	-1.843	0.036	17.054	-26.699	-83.585
1	14	C_U56:G18_C	0.533	-7.116	-0.409	21.342	-3.406	-98.686
1	28	D_A3:U71_D	0.003	0.03	0.263	7.795	5.457	6.846
1	49	D_A14:A22_D	-6.74	-0.869	-0.846	-17.724	-11.237	48.48
1	35	D_A52:U64_D	0.007	0.401	0.264	2.748	-13.225	11.252
1	29	D_C4:G70_D	-0.029	-0.213	0.264	-5.479	-7.58	2.77
1	30	D_C5:G69_D	0.618	-0.476	0.801	0.138	-10.921	0.545
1	46	D_C11:G25_D	0.384	-0.139	-0.122	10.747	-23.432	6.134
1	48	D_C13:G23_D	1.16	0.01	0.082	0.8	-15.301	5.356
1	40	D_C40:G32_D	0.876	0.012	-1.493	13.947	-12.875	7.441
1	41	D_C41:G31_D	0.134	0.001	0.569	-7.999	8.838	-0.374
1	44	D_C44:G28_D	0.349	-0.061	0.513	-20.656	-22.522	6.082
1	26	D_G1:C73_D	-0.089	0.102	-1.074	-4.754	-15.774	0.964
1	27	D_G2:C72_D	0.207	-0.005	-0.089	-9.312	3.093	0.598
1	45	D_G10:C26_D	-0.595	-0.03	0.339	13.484	-0.017	8.22
1	50	D_G15:C49_D	0.274	2.704	-0.357	-1.033	-16.769	166.762
1	51	D_G19:C57_D	-0.257	0.646	-0.178	-26.914	-28.155	19.199
1	42	D_G42:C30_D	-1.812	0.336	0.459	-0.626	-24.945	12.83
1	33	D_G50:C66_D	-0.227	0.175	0.635	-12.35	-3.992	0.572
1	36	D_G53:C63_D	0.359	-0.028	-0.754	-11.046	-2.643	-3.732
1	37	D_G54:C62_D	0.312	0.107	0.371	-14.012	-0.144	5.14
1	31	D_U6:A68_D	-1.052	0.186	0.479	-34.345	-31.671	7.68
1	32	D_U7:A67_D	-1.029	0.188	-0.456	-0.846	-16.38	-5.737
1	47	D_U12:A24_D	0.214	-0.161	0.975	-14.352	3.97	-7.254
1	43	D_U43:A29_D	0.002	-0.104	-0.317	2.323	-17.981	-5.379
1	34	D_U51:A65_D	-0.337	0.01	0.243	-3.125	-14.306	0.53
1	38	D_U55:A59_D	3.007	-1.188	0.292	12.126	-0.939	-80.76
1	39	D_U56:G18_D	0.628	-6.484	0.369	14.978	4.239	-104.033

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.