A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
Search for released structures

NDB ID: NA0467  PDB ID: 3AFA 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11I_DA1:DT292_J0.2670.112-0.132-22.3918.404-6.205
14I_DA4:DT289_J0.053-0.091-0.1899.827-13.3585.308
15I_DA5:DT288_J0.146-0.132-0.2294.465-15.6383.321
17I_DA7:DT286_J0.165-0.058-0.3252.613-11.7392.809
111I_DA11:DT282_J0.0840.029-0.259-2.7491.123-9.086
117I_DA17:DT276_J0.01-0.0640.4479.732-10.243-1.502
119I_DA19:DT274_J0.161-0.1490.4589.626-15.0943.453
124I_DA24:DT269_J0.001-0.115-0.419-10.836-16.6663.33
127I_DA27:DT266_J0.213-0.0520.286-1.649-17.682-5.561
128I_DA28:DT265_J0.103-0.1520.1297.563-5.2031.213
129I_DA29:DT264_J0.1870.0230.253.263-11.323-2.497
130I_DA30:DT263_J0.126-0.0520.0632.576-9.7041.958
135I_DA35:DT258_J0.0290.0-0.249-21.4060.3883.004
141I_DA41:DT252_J0.076-0.179-0.0399.349-16.895-2.166
142I_DA42:DT251_J0.037-0.1580.624-2.216-2.845-0.387
143I_DA43:DT250_J0.059-0.2150.5840.874-6.611-2.062
151I_DA51:DT242_J0.019-0.151-0.366-9.057-19.5729.047
154I_DA54:DT239_J-0.049-0.147-0.787-10.384-10.1230.343
155I_DA55:DT238_J-0.182-0.163-0.509-7.884-25.7762.65
156I_DA56:DT237_J0.054-0.0020.210.807-20.721-5.286
157I_DA57:DT236_J0.182-0.0440.414.356-28.086-2.68
161I_DA61:DT232_J0.069-0.103-0.154-7.835-11.2313.322
167I_DA67:DT226_J0.113-0.0140.173-1.043-28.916-8.221
172I_DA72:DT221_J-0.0130.032-0.147-0.583-8.8730.197
173I_DA73:DT220_J0.146-0.148-0.473-0.944-11.0840.45
177I_DA77:DT216_J0.2370.136-0.0192.823-26.897-6.532
182I_DA82:DT211_J-0.075-0.11-0.1621.602-9.3222.232
183I_DA83:DT210_J0.183-0.142-0.573-2.59-4.7672.006
185I_DA85:DT208_J0.078-0.070.235-1.951-10.4841.955
195I_DA95:DT198_J0.019-0.107-0.688-9.551-6.2941.502
199I_DA99:DT194_J0.313-0.1070.3142.566-29.442-9.082
1102I_DA102:DT191_J-0.149-0.191-0.477-5.759-2.0257.024
1109I_DA109:DT184_J-0.045-0.1070.0773.708-11.556-1.764
1110I_DA110:DT183_J0.105-0.065-0.359-4.54-17.667-0.084
1111I_DA111:DT182_J0.093-0.2140.3912.253-10.379-2.135
1113I_DA113:DT180_J-0.091-0.227-0.06-5.727-8.8017.581
1115I_DA115:DT178_J0.134-0.185-0.4084.392-13.8164.709
1124I_DA124:DT169_J0.109-0.094-0.25217.621-18.94-0.013
1126I_DA126:DT167_J0.068-0.159-0.303-10.593-20.3414.4
1127I_DA127:DT166_J0.097-0.13-0.087-16.0140.324-0.206
1133I_DA133:DT160_J0.1350.047-0.193.044-16.5520.869
1139I_DA139:DT154_J0.3260.0690.0617.897-7.924-5.561
1141I_DA141:DT152_J0.38-0.1610.5516.049-16.596-0.405
1145I_DA145:DT148_J0.148-0.090.7194.586-18.925-1.464
13I_DC3:DG290_J0.201-0.062-0.6159.711-11.1213.493
19I_DC9:DG284_J0.001-0.098-0.366-9.776-12.7472.686
110I_DC10:DG283_J0.019-0.253-0.7542.2493.475-3.515
112I_DC12:DG281_J-0.018-0.036-0.4936.5070.755-5.086
113I_DC13:DG280_J0.167-0.138-0.499-3.74-18.5836.586
116I_DC16:DG277_J0.383-0.137-0.52419.554-23.9241.755
122I_DC22:DG271_J0.126-0.040.326-12.881-10.735-1.618
125I_DC25:DG268_J0.056-0.2381.393-21.46-0.539-1.31
126I_DC26:DG267_J0.096-0.1240.5869.883-11.407-1.45
144I_DC44:DG249_J0.049-0.0250.484-5.273-7.567-0.736
147I_DC47:DG246_J0.083-0.1050.788-12.874-16.5711.358
149I_DC49:DG244_J0.071-0.005-0.194-5.149-15.022.49
150I_DC50:DG243_J0.068-0.057-0.182-2.281-4.955-3.516
153I_DC53:DG240_J0.107-0.129-0.5335.447-16.6152.789
160I_DC60:DG233_J0.11-0.011-0.122-6.878-0.3080.072
166I_DC66:DG227_J0.037-0.003-0.57912.344-2.375-0.894
169I_DC69:DG224_J-0.0760.0710.405-0.821-14.877-3.176
176I_DC76:DG217_J0.126-0.032-0.1032.532-6.9020.992
179I_DC79:DG214_J-0.047-0.1010.332-3.301-26.075-1.776
184I_DC84:DG209_J0.136-0.179-0.7618.27-9.4594.972
188I_DC88:DG205_J-0.043-0.0890.989-1.713-27.665-6.66
189I_DC89:DG204_J0.056-0.050.69-14.9792.264-2.265
1101I_DC101:DG192_J0.0670.0040.4693.544-19.295-0.733
1107I_DC107:DG186_J0.214-0.104-0.413-1.1182.192.665
1108I_DC108:DG185_J-0.017-0.0430.5913.593-9.367-4.378
1114I_DC114:DG179_J0.066-0.079-0.164-1.631-9.1590.612
1116I_DC116:DG177_J0.179-0.106-0.6116.21-19.0320.263
1129I_DC129:DG164_J0.049-0.1941.341-15.348-3.0261.804
1132I_DC132:DG161_J-0.0440.012-0.43816.035-25.3832.668
115I_DG15:DC278_J-0.133-0.0570.3870.882-12.283-1.714
118I_DG18:DC275_J-0.1010.0150.75714.68-6.4592.646
131I_DG31:DC262_J-0.176-0.103-0.381-7.792-15.8430.83
133I_DG33:DC260_J-0.14-0.112-0.4756.116-13.2233.52
139I_DG39:DC254_J-0.1220.03-0.108-2.055-0.8580.313
140I_DG40:DC253_J0.003-0.1560.61215.976-24.839-1.748
146I_DG46:DC247_J-0.329-0.045-0.315-2.493-11.3975.951
158I_DG58:DC235_J-0.231-0.1380.287-4.448-8.085-2.087
159I_DG59:DC234_J-0.249-0.022-0.234-5.851-9.5951.372
163I_DG63:DC230_J-0.19-0.09-0.346-12.542-5.8172.333
168I_DG68:DC225_J-0.254-0.108-0.186-2.8242.856-1.114
171I_DG71:DC222_J-0.162-0.069-0.3811.013-5.9786.067
178I_DG78:DC215_J-0.019-0.080.1138.8833.847-0.492
181I_DG81:DC212_J-0.274-0.005-0.184-5.967-3.7394.324
187I_DG87:DC206_J-0.207-0.132-0.115-6.0415.2311.755
194I_DG94:DC199_J-0.09-0.357-1.272-14.508-10.5890.92
197I_DG97:DC196_J-0.0360.0310.40312.28-12.945-1.552
198I_DG98:DC195_J-0.188-0.0350.16611.467-0.4575.222
1100I_DG100:DC193_J-0.164-0.1440.5365.4781.521.439
1103I_DG103:DC190_J0.0130.018-0.141-5.572-1.392-1.354
1121I_DG121:DC172_J-0.175-0.1151.11516.6275.711-0.45
1122I_DG122:DC171_J-0.0050.0020.29618.222.616-7.083
1125I_DG125:DC168_J-0.028-0.048-0.686-5.736-7.957-0.205
1131I_DG131:DC162_J-0.24-0.212-1.116-29.685-33.84310.082
1134I_DG134:DC159_J-0.07-0.208-0.49211.558-10.2021.345
1135I_DG135:DC158_J-0.08-0.376-1.19-15.538-10.591.236
1137I_DG137:DC156_J-0.238-0.175-1.093-6.117-15.5978.253
1138I_DG138:DC155_J-0.239-0.046-0.197-3.349-8.2022.922
1144I_DG144:DC149_J-0.097-0.1560.019-1.457-26.2571.889
12I_DT2:DA291_J0.04-0.070.225-6.1761.8440.942
16I_DT6:DA287_J0.059-0.086-0.23915.926-4.1-2.197
18I_DT8:DA285_J-0.004-0.022-0.197-0.441-13.8941.425
114I_DT14:DA279_J0.013-0.016-0.296-3.799-15.996-2.133
120I_DT20:DA273_J0.057-0.071-0.5397.351-19.4194.531
121I_DT21:DA272_J0.059-0.114-0.229-2.196-14.1014.64
123I_DT23:DA270_J-0.048-0.080.48-18.767-12.8331.375
132I_DT32:DA261_J-0.094-0.061-0.71410.281-7.075-4.044
134I_DT34:DA259_J-0.088-0.073-0.2960.177-9.510.237
136I_DT36:DA257_J-0.138-0.0940.494-10.41-6.476-0.106
137I_DT37:DA256_J-0.302-0.1280.648-16.375-19.445-2.682
138I_DT38:DA255_J-0.162-0.033-0.074-6.424-27.271-0.437
145I_DT45:DA248_J-0.166-0.1290.554-1.982-20.93-5.393
148I_DT48:DA245_J-0.1650.017-0.141-4.233-25.898-0.554
152I_DT52:DA241_J-0.109-0.024-0.33510.217-17.121-10.174
162I_DT62:DA231_J-0.12-0.049-0.23-4.334-14.86-0.895
164I_DT64:DA229_J-0.111-0.0910.275-3.567-13.6131.725
165I_DT65:DA228_J-0.015-0.07-0.2917.954-8.3922.128
170I_DT70:DA223_J-0.165-0.062-0.27-5.791-0.585-4.427
174I_DT74:DA219_J-0.133-0.128-0.3220.23-7.4343.744
175I_DT75:DA218_J0.032-0.076-0.238-3.415-13.7964.333
180I_DT80:DA213_J-0.12-0.062-0.324-8.158-4.219-3.593
186I_DT86:DA207_J-0.0550.005-0.4865.783-10.754-0.199
190I_DT90:DA203_J-0.239-0.080.477-7.453-18.868-3.556
191I_DT91:DA202_J0.0880.02-0.5194.983-11.8542.662
192I_DT92:DA201_J-0.065-0.253-0.7032.967-6.2986.822
193I_DT93:DA200_J0.005-0.182-0.8281.228-9.6731.071
196I_DT96:DA197_J-0.071-0.102-0.0556.997-4.84-0.251
1104I_DT104:DA189_J-0.059-0.079-0.03-6.731-8.4031.618
1105I_DT105:DA188_J-0.078-0.1520.432-5.886-2.0830.242
1106I_DT106:DA187_J-0.0320.003-0.2541.059-18.733-0.854
1112I_DT112:DA181_J-0.105-0.002-0.2111.078-3.239-2.623
1117I_DT117:DA176_J-0.1090.0120.354-3.203-14.491-1.617
1118I_DT118:DA175_J0.028-0.1830.5161.116-11.653-1.905
1119I_DT119:DA174_J-0.144-0.060.265-7.418-13.1390.051
1120I_DT120:DA173_J0.07-0.082-0.1933.501-16.370.546
1123I_DT123:DA170_J-0.008-0.032-1.32633.282-10.677-6.775
1128I_DT128:DA165_J-0.144-0.1330.848-16.822-13.594-2.515
1130I_DT130:DA163_J-0.266-0.0210.189-5.404-27.947-8.206
1136I_DT136:DA157_J-0.118-0.14-0.1958.412-6.209-2.561
1140I_DT140:DA153_J-0.215-0.2970.338-2.775-6.8442.556
1142I_DT142:DA151_J0.103-0.133-0.1674.627-11.3392.768
1143I_DT143:DA150_J0.151-0.13-0.47118.748-15.128-3.356
1146I_DT146:DA147_J-0.3260.1290.24519.501-0.87-15.823

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.