A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
Search for released structures

NDB ID: NA0725  PDB ID: 3AN2 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11I_DA-60:DT60_J0.118-0.147-0.23-7.614-30.251-7.329
12I_DA-59:DT59_J0.1890.0960.205-19.03-37.373-11.195
17I_DA-54:DT54_J0.0160.108-0.317-11.383-26.546-8.995
115I_DA-46:DT46_J0.005-0.0710.119-13.2566.0911.512
120I_DA-41:DT41_J-0.138-0.2180.1439.303-3.35211.062
125I_DA-36:DT36_J0.25-0.198-0.0145.967-22.5713.24
127I_DA-34:DT34_J0.1370.265-0.65-19.856-25.761-14.136
129I_DA-32:DT32_J-0.055-0.2330.86510.7555.628-3.544
131I_DA-30:DT30_J-0.108-0.17-0.665-5.235-13.0221.009
132I_DA-29:DT29_J0.098-0.081-0.20514.789-9.3634.202
134I_DA-27:DT27_J-0.158-0.082-0.739-9.226-34.1847.141
135I_DA-26:DT26_J-0.094-0.049-0.453-19.941-40.258-8.194
141I_DA-20:DT20_J-0.089-0.156-1.543-28.781-18.194-9.555
144I_DA-17:DT17_J0.23-0.1080.6113.717-21.337-4.462
145I_DA-16:DT16_J0.028-0.1440.394-25.954-6.9913.091
161I_DA0:DA0_J0.9080.881-1.431-15.887-11.017-3.33
162I_DA1:DT-1_J0.1520.044-1.112-42.251-3.508-7.603
165I_DA4:DT-4_J-0.0070.082-0.472-22.615-8.015-0.998
168I_DA7:DT-7_J-0.0920.016-0.195-13.801-14.737-1.671
170I_DA9:DT-9_J-0.018-0.1190.065-4.2769.6611.202
171I_DA10:DT-10_J0.095-0.118-0.6462.024-23.6574.951
172I_DA11:DT-11_J0.02-0.403-1.082-2.518-18.26915.221
174I_DA13:DT-13_J-0.196-0.385-1.19-7.61-18.9624.048
175I_DA14:DT-14_J0.212-0.104-0.00314.07-22.5754.629
179I_DA18:DT-18_J-0.076-0.081-0.576-14.744-22.538-5.92
183I_DA22:DT-22_J-0.056-0.093-0.043-6.101-1.6692.486
185I_DA24:DT-24_J0.004-0.071-0.0162.354-18.647-10.554
186I_DA25:DT-25_J-0.011-0.1760.315-2.463-5.41.139
198I_DA37:DT-37_J-0.018-0.032-0.35-17.561-7.654-1.326
1101I_DA40:DT-40_J0.032-0.2520.38-13.11910.9560.86
1104I_DA43:DT-43_J0.010.045-0.58-10.886-28.744-3.114
1105I_DA44:DT-44_J0.0850.002-0.214-7.627-31.971-5.073
1106I_DA45:DT-45_J0.011-0.297-0.2775.57-33.7979.689
1109I_DA48:DT-48_J0.01-0.1050.1731.231-19.6734.77
1110I_DA49:DT-49_J0.153-0.065-0.5384.923-2.385-13.984
1112I_DA51:DT-51_J0.1810.022-0.2939.591-18.337-12.436
1113I_DA52:DT-52_J0.2330.138-0.262.83-15.37-11.8
1114I_DA53:DT-53_J0.249-0.0170.76717.18-23.282-4.446
13I_DC-58:DG58_J0.049-0.068-0.9879.564-13.5524.367
111I_DC-50:DG50_J-0.331-0.0760.036-3.458-18.765-10.048
114I_DC-47:DG47_J-0.1120.0190.58-24.989-11.072-4.484
119I_DC-42:DG42_J0.281-0.083-0.1880.817-11.3536.279
123I_DC-38:DG38_J0.0280.08-0.66432.64-18.1642.02
128I_DC-33:DG33_J0.022-0.1841.221-18.6357.9171.864
138I_DC-23:DG23_J0.25-0.054-0.166-4.951-13.673-1.225
140I_DC-21:DG21_J-0.235-0.0050.225-9.184-15.894-8.93
146I_DC-15:DG15_J-0.138-0.221.068-8.123-17.53-6.215
149I_DC-12:DG12_J0.301-0.502-1.41810.64-25.01316.382
156I_DC-5:DG5_J0.185-0.3160.98415.389.485.577
163I_DC2:DG-2_J-0.1930.027-0.424-20.205-10.166.708
164I_DC3:DG-3_J-0.102-0.0540.879-25.187-12.672-2.454
167I_DC6:DG-6_J0.0820.039-0.16215.903-17.485-2.642
169I_DC8:DG-8_J0.129-0.014-0.140.424-3.4150.489
180I_DC19:DG-19_J0.242-0.391.716-12.68910.32110.812
189I_DC28:DG-28_J0.019-0.084-0.138-3.411-16.94-4.271
192I_DC31:DG-31_J0.046-0.08-0.148-14.12-15.7431.491
196I_DC35:DG-35_J0.029-0.2090.1331.148-35.957-3.348
1100I_DC39:DG-39_J-0.058-0.037-0.2066.654-8.734-2.563
1116I_DC55:DG-55_J-0.03-0.1851.112-5.555-23.716-6.333
1117I_DC56:DG-56_J0.093-0.143-0.443-0.98614.228-1.391
1118I_DC57:DG-57_J0.104-0.1390.3511.894-7.037-6.185
14I_DG-57:DC57_J0.006-0.206-0.911-10.46-21.9263.495
15I_DG-56:DC56_J-0.128-0.2781.2449.692-5.225-0.427
16I_DG-55:DC55_J-0.04-0.1880.5367.614-17.346-4.789
122I_DG-39:DC39_J-0.0290.032-0.14230.905-20.3223.703
126I_DG-35:DC35_J-0.101-0.055-0.4950.451-8.298-0.668
130I_DG-31:DC31_J-0.067-0.0260.4410.251-11.9070.814
133I_DG-28:DC28_J0.007-0.142-0.301-0.858-24.325-4.518
142I_DG-19:DC19_J-0.206-0.011-0.681-24.0286.954-1.979
153I_DG-8:DC8_J-0.1730.0160.103-21.622-0.548-0.705
155I_DG-6:DC6_J0.117-0.3171.81937.633-6.676-6.656
158I_DG-3:DC3_J-0.361-0.383-1.522-16.531-29.04219.72
159I_DG-2:DC2_J-0.306-0.3051.0754.5684.4693.141
166I_DG5:DC-5_J-0.209-0.1340.5870.281-5.3630.598
173I_DG12:DC-12_J-0.1860.0360.74729.708-5.5320.506
176I_DG15:DC-15_J0.097-0.2680.504-0.814-29.03-10.069
182I_DG21:DC-21_J-0.262-0.123-1.08-24.883-23.133.599
184I_DG23:DC-23_J-0.353-0.135-0.275-1.633-28.5478.993
194I_DG33:DC-33_J-0.2650.079-0.066-13.0589.5633.043
199I_DG38:DC-38_J-0.201-0.1040.95715.86110.5881.525
1103I_DG42:DC-42_J-0.203-0.333-1.147-1.24-27.05113.758
1108I_DG47:DC-47_J-0.049-0.1140.042-19.325-27.693-7.103
1111I_DG50:DC-50_J0.201-0.054-0.3044.646-19.995-1.51
1119I_DG58:DC-58_J-0.153-0.0620.80513.472-7.167-2.347
18I_DT-53:DA53_J-0.165-0.045-1.1074.717-13.668-11.723
19I_DT-52:DA52_J-0.1490.129-0.6477.342-24.631-14.792
110I_DT-51:DA51_J-0.2120.4030.159-5.402-14.451-33.104
112I_DT-49:DA49_J-0.188-0.086-0.86811.9719.774-19.538
113I_DT-48:DA48_J-0.156-0.169-1.49315.664-7.831-8.771
116I_DT-45:DA45_J-0.045-0.230.557.445-16.474-1.206
117I_DT-44:DA44_J-0.0660.0120.01212.738-23.555-14.138
118I_DT-43:DA43_J0.118-0.118-1.29736.562-10.288-3.748
121I_DT-40:DA40_J0.075-0.6341.36213.3949.1019.949
124I_DT-37:DA37_J-0.083-0.3391.1679.231-7.943-5.352
136I_DT-25:DA25_J-0.098-0.131-0.6382.8531.5281.148
137I_DT-24:DA24_J0.0540.108-0.64213.946-34.874-3.676
139I_DT-22:DA22_J-0.226-0.107-0.071-9.109-23.30413.214
143I_DT-18:DA18_J-0.346-0.230.608-9.154-23.889-0.689
147I_DT-14:DA14_J-0.2210.057-0.8689.842-6.461-4.303
148I_DT-13:DA13_J0.029-0.075-0.6211.104-22.2277.89
150I_DT-11:DA11_J-0.347-0.1070.252-19.862-25.2376.743
151I_DT-10:DA10_J0.002-0.575-1.9220.2770.151-4.506
152I_DT-9:DA9_J0.115-0.065-0.66710.296-12.216-4.089
154I_DT-7:DA7_J-0.031-0.1890.915-16.2271.80910.517
157I_DT-4:DA4_J-0.077-0.0870.49523.203-15.212-8.159
160I_DT-1:DA1_J0.15-0.161-0.84215.756-17.75-0.898
177I_DT16:DA-16_J-0.031-0.25-1.14621.94520.253-1.2
178I_DT17:DA-17_J-0.0460.014-0.43415.759-15.18-6.543
181I_DT20:DA-20_J0.036-0.1320.2581.842-10.7194.768
187I_DT26:DA-26_J0.0470.029-0.8151.13-40.506-1.9
188I_DT27:DA-27_J-0.063-0.607-1.254-6.802-2.71716.799
190I_DT29:DA-29_J-0.167-0.196-0.552-27.844-10.1234.16
191I_DT30:DA-30_J0.007-0.325-1.47213.286-2.964-8.248
193I_DT32:DA-32_J-0.17-0.156-0.679-16.905-5.106-5.659
195I_DT34:DA-34_J0.158-0.2360.7068.258-22.6382.469
197I_DT36:DA-36_J0.011-0.264-0.742-4.826-14.06511.265
1102I_DT41:DA-41_J-0.241-0.1390.66-10.991-9.5476.297
1107I_DT46:DA-46_J-0.113-0.248-0.8488.846-34.7914.534
1115I_DT54:DA-54_J-0.209-0.0370.437.96-20.247-16.679
1120I_DT59:DA-59_J0.118-0.049-0.79512.307-36.6010.489
1121I_DT60:DA-60_J-0.089-0.043-0.637.548-21.3893.94

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.