A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: NA1131  PDB ID: 3AYW 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11I_DA1:DT292_J0.126-0.274-0.916-12.5613.3965.504
14I_DA4:DT289_J-0.076-0.055-0.2645.427-15.7087.055
15I_DA5:DT288_J0.1950.0780.497.644-7.907-6.49
17I_DA7:DT286_J0.292-0.1180.3017.639-25.26-1.482
110I_DA11:DT282_J0.097-0.167-0.976-8.135-2.083-8.626
116I_DA17:DT276_J-0.044-0.0590.8442.7835.546-3.489
118I_DA19:DT274_J0.064-0.1080.0761.757-12.5522.793
123I_DA24:DT269_J-0.091-0.035-0.128-14.852-24.7075.646
126I_DA27:DT266_J0.1010.0260.2352.894-9.009-4.034
127I_DA28:DT265_J0.09-0.1340.084.737-7.785-1.431
128I_DA29:DT264_J0.0980.112-0.128-1.566-8.769-6.352
129I_DA30:DT263_J0.109-0.111-0.6486.439-16.8782.548
134I_DA35:DT258_J-0.085-0.098-0.216-1.7228.812.242
140I_DA41:DT252_J0.051-0.119-0.416-0.809-19.3152.414
141I_DA42:DT251_J0.110.073-0.569-12.1795.369-6.206
142I_DA43:DT250_J-0.055-0.041-0.0211.97-4.554.147
150I_DA51:DT242_J0.115-0.127-0.635-4.16-8.601-1.312
153I_DA54:DT239_J-0.087-0.194-0.69414.573-8.0463.796
154I_DA55:DT238_J-0.099-0.128-0.9613.122-39.612-0.805
155I_DA56:DT237_J-0.0020.06-0.2576.104-33.028-4.467
156I_DA57:DT236_J-0.1090.006-0.126-4.377-16.679-3.418
160I_DA61:DT232_J0.031-0.072-0.346-28.369-10.2871.281
166I_DA67:DT226_J0.076-0.0220.069-2.591-28.67-7.873
171I_DA72:DT221_J0.0340.193-0.24-5.271-9.063-5.108
172I_DA73:DT220_J0.215-0.249-0.63-4.914-7.3934.302
176I_DA77:DT216_J0.079-0.015-0.595-2.897-26.406-2.15
181I_DA82:DT211_J-0.0350.051-0.0253.758-13.041-2.455
182I_DA83:DT210_J0.1370.039-0.0812.675-6.5781.726
184I_DA85:DT208_J-0.04-0.057-0.314-7.195-12.7470.701
194I_DA95:DT198_J0.052-0.096-1.034-13.674-5.26-5.381
198I_DA99:DT194_J0.1340.072-0.618-14.704-45.657-2.479
1101I_DA102:DT191_J-0.118-0.057-0.089-2.125-8.8792.805
1108I_DA109:DT184_J-0.037-0.0050.1668.308-14.996-5.636
1109I_DA110:DT183_J0.072-0.056-0.425-6.541-19.728-1.415
1110I_DA111:DT182_J0.211-0.1040.573-3.30113.778-5.498
1112I_DA113:DT180_J0.112-0.10.066-1.293-16.5283.606
1114I_DA115:DT178_J-0.005-0.2830.3590.657-13.6234.199
1122I_DA124:DT169_J0.207-0.547-1.68214.224-9.902-12.786
1124I_DA126:DT167_J-0.201-0.133-0.57-16.175-25.534-2.148
1125I_DA127:DT166_J0.218-0.5771.162-16.745-12.517.132
1131I_DA133:DT160_J0.178-0.065-0.6084.955-20.6282.93
1137I_DA139:DT154_J0.391-0.024-0.05111.748-14.096-4.161
1139I_DA141:DT152_J0.315-0.2060.5713.901-13.697-0.86
1143I_DA145:DT148_J-0.007-0.375-1.489-25.612-10.0364.573
13I_DC3:DG290_J0.140.086-0.3255.427-1.4122.273
18I_DC9:DG284_J0.18-0.044-0.959-11.011-15.07915.903
19I_DC10:DG283_J-0.04-0.36-1.4637.2659.003-4.983
111I_DC12:DG281_J0.006-0.215-0.9210.065-0.108-3.596
112I_DC13:DG280_J-0.0760.001-0.265-5.006-15.8244.489
115I_DC16:DG277_J-0.094-0.2710.8861.649-14.775-8.268
121I_DC22:DG271_J-0.003-0.137-0.153-13.36-8.8150.506
124I_DC25:DG268_J0.061-0.5141.961-27.9637.3370.519
125I_DC26:DG267_J0.182-0.0920.5872.802-16.431-0.197
143I_DC44:DG249_J0.124-0.008-0.1386.15-16.6593.673
146I_DC47:DG246_J0.179-0.0140.2660.399-12.5891.851
148I_DC49:DG244_J0.028-0.0070.229-9.387-4.8961.963
149I_DC50:DG243_J0.1540.011-0.04613.557-15.321-1.275
152I_DC53:DG240_J0.164-0.1030.11410.2752.0981.945
159I_DC60:DG233_J-0.083-0.0390.084-7.193-5.1540.499
165I_DC66:DG227_J-0.118-0.0690.1731.756-4.319-3.559
168I_DC69:DG224_J-0.0320.0410.4662.075-16.798-4.546
175I_DC76:DG217_J0.027-0.163-0.6197.738-10.268-3.227
178I_DC79:DG214_J-0.111-0.1720.20.048-27.791-6.031
183I_DC84:DG209_J0.219-0.145-0.224.173-2.4313.353
187I_DC88:DG205_J-0.245-0.1320.86-2.019-33.716-7.522
188I_DC89:DG204_J-0.046-0.0010.561-17.519-1.306-3.88
1100I_DC101:DG192_J0.0270.0530.6193.466-15.888-1.136
1106I_DC107:DG186_J0.004-0.053-0.3141.22-0.01-2.168
1107I_DC108:DG185_J-0.055-0.0460.28313.562-22.259-5.206
1113I_DC114:DG179_J0.068-0.08-0.379-0.447-13.434-0.423
1115I_DC116:DG177_J0.166-0.1450.722-3.5528.553.523
1127I_DC129:DG164_J-0.219-0.7932.043-8.2061.718-3.408
1130I_DC132:DG161_J-0.036-0.052-0.48511.702-26.0693.197
114I_DG15:DC278_J-0.045-0.101-0.4666.057-2.549-2.803
117I_DG18:DC275_J-0.0920.0620.83420.831-8.0491.603
130I_DG31:DC262_J-0.178-0.050.067-16.449-0.662-0.773
132I_DG33:DC260_J-0.171-0.213-0.7038.868-7.372-0.712
138I_DG39:DC254_J-0.171-0.111-0.958-9.476-1.637-1.747
139I_DG40:DC253_J-0.132-0.0450.29-1.963-25.323-0.948
145I_DG46:DC247_J-0.237-0.1140.058-5.794-6.8353.328
157I_DG58:DC235_J-0.073-0.1840.585-19.551-20.614-7.91
158I_DG59:DC234_J-0.360.045-0.592-16.586-11.0283.418
162I_DG63:DC230_J-0.181-0.081-0.617-18.878-0.6050.718
167I_DG68:DC225_J-0.327-0.1280.5162.31710.7034.983
170I_DG71:DC222_J-0.03-0.0190.20110.374-10.2874.153
177I_DG78:DC215_J-0.291-0.013-0.574-3.172-8.9291.465
180I_DG81:DC212_J-0.218-0.063-1.128-15.164-12.8557.178
186I_DG87:DC206_J-0.309-0.007-0.57-4.7125.3092.987
193I_DG94:DC199_J0.007-0.094-0.868-11.2658.693-2.316
196I_DG97:DC196_J-0.0720.0560.1068.87-12.621.434
197I_DG98:DC195_J0.077-0.345-1.1631.306-9.9372.85
199I_DG100:DC193_J-0.241-0.180.5634.9628.0412.661
1102I_DG103:DC190_J0.016-0.060.099-6.7136.168-3.048
1119I_DG121:DC172_J-0.18-0.0820.95413.5211.125-2.046
1120I_DG122:DC171_J-0.025-0.151.04522.393-12.182-7.637
1123I_DG125:DC168_J-0.081-0.057-0.883-7.825-3.715-0.526
1129I_DG131:DC162_J-0.14-0.163-0.74-32.044-37.7194.328
1132I_DG134:DC159_J0.047-0.132-0.698-0.379-1.872-6.449
1133I_DG135:DC158_J-0.046-0.255-0.733-7.903-2.335-4.087
1135I_DG137:DC156_J-0.034-0.114-0.916-5.02-16.6922.831
1136I_DG138:DC155_J-0.2840.002-0.454-8.489-18.3567.971
1142I_DG144:DC149_J-0.071-0.023-0.313-1.723-7.2662.799
12I_DT2:DA291_J-0.017-0.052-0.37-0.561-9.578-5.435
16I_DT6:DA287_J-0.1790.032-0.46115.504-9.892-7.492
113I_DT14:DA279_J0.125-0.0740.24-4.65-4.708-0.73
119I_DT20:DA273_J0.097-0.206-1.58923.662-13.635-0.48
120I_DT21:DA272_J0.063-0.135-0.6222.798-25.3735.212
122I_DT23:DA270_J-0.03-0.029-0.412-12.933-10.9640.12
131I_DT32:DA261_J-0.0880.012-0.2735.944-4.638-6.091
133I_DT34:DA259_J-0.091-0.012-0.091-3.549-9.6990.343
135I_DT36:DA257_J-0.2380.0220.1894.318-12.756-6.84
136I_DT37:DA256_J-0.3050.0420.223-14.728-25.41-3.472
137I_DT38:DA255_J-0.4280.063-0.164-21.872-31.899-3.092
144I_DT45:DA248_J0.085-0.2630.771-2.431-10.3821.498
147I_DT48:DA245_J-0.211-0.004-0.195-11.586-17.722-0.78
151I_DT52:DA241_J0.039-0.112-0.65113.461-17.386-3.071
161I_DT62:DA231_J-0.230.0590.146-14.57-15.542-2.628
163I_DT64:DA229_J-0.128-0.2410.875-11.736-9.573-2.459
164I_DT65:DA228_J-0.060.039-0.3856.81-15.407-1.008
169I_DT70:DA223_J-0.106-0.1310.078-1.255-2.354-1.089
173I_DT74:DA219_J-0.0860.02-0.031-7.512-15.719-3.688
174I_DT75:DA218_J-0.169-0.126-0.7727.078-18.1260.908
179I_DT80:DA213_J-0.052-0.191-0.531-8.691-4.831-0.851
185I_DT86:DA207_J-0.320.134-0.2551.652-9.305-2.817
189I_DT90:DA203_J-0.2330.0160.494-13.414-17.135-6.933
190I_DT91:DA202_J0.015-0.058-0.301-3.208-14.9871.199
191I_DT92:DA201_J0.022-0.047-0.46613.125-4.1564.051
192I_DT93:DA200_J-0.056-0.369-1.087-6.626-17.0643.975
195I_DT96:DA197_J-0.083-0.063-0.3086.148-11.4710.761
1103I_DT104:DA189_J-0.022-0.029-0.009-6.675-7.941-2.119
1104I_DT105:DA188_J-0.073-0.090.0750.532-6.197-2.138
1105I_DT106:DA187_J-0.0790.032-0.511.113-23.158-3.547
1111I_DT112:DA181_J-0.032-0.0240.284-0.441-0.1020.755
1116I_DT118:DA175_J0.2550.3130.057-28.37854.542-12.96
1117I_DT119:DA174_J-0.14-0.015-0.168-3.166-11.8013.23
1118I_DT120:DA173_J0.079-0.095-0.3088.242-20.7121.176
1121I_DT123:DA170_J-0.1310.082-0.14535.568-2.235-11.872
1126I_DT128:DA165_J0.197-0.1710.913-9.07518.95.335
1128I_DT130:DA163_J-0.19-0.0840.46-3.662-27.74-12.447
1134I_DT136:DA157_J0.044-0.233-0.01911.949-18.52511.65
1138I_DT140:DA153_J-0.183-0.3880.261-4.606-4.3744.071
1140I_DT142:DA151_J0.07-0.114-0.2123.027-10.242-0.243
1141I_DT143:DA150_J-0.008-0.165-0.54514.161-5.552-2.882

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.