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As of 21-Aug-2019 number of released structures: 10343
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NDB ID: NA1131  PDB ID: 3AYW 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11II_DA1DT2:DA291DT292_JJ-0.939-0.7083.223-2.493-6.48727.1680.1071.3363.369-13.5315.228.027
14II_DA4DA5:DT288DT289_JJ-0.641-0.1643.079-10.2173.26137.948-0.617-0.2183.1184.89615.34139.38
15II_DA5DT6:DA287DT288_JJ0.37-1.0693.0829.351-3.03429.516-1.4271.063.142-5.757-17.74431.076
17II_DA7DC9:DG284DT286_JJ0.125-0.3367.1491.7850.40575.401-0.3010.0157.1480.331-1.45975.42
110II_DA11DC12:DG281DT282_JJ0.215-0.7613.013-4.7930.03130.975-1.415-1.2262.9460.0578.90831.335
116II_DA17DG18:DC275DT276_JJ1.188-0.2432.9364.662-0.56631.062-0.35-1.3863.081-1.049-8.64331.406
118II_DA19DT20:DA273DT274_JJ-0.1510.4822.57514.651-1.70434.4110.9281.7412.299-2.73-23.47537.351
123II_DA24DC25:DG268DT269_JJ0.0050.4953.908-15.9542.47532.1770.376-2.7613.5444.15526.78335.904
126II_DA27DA28:DT265DT266_JJ0.610.1853.1582.7066.09132.655-0.67-0.6243.17910.695-4.7533.31
127II_DA28DA29:DT264DT265_JJ-0.7590.3643.485-4.175-6.33243.7711.1090.5913.458-8.4185.5544.392
128II_DA29DA30:DT263DT264_JJ-0.008-0.3533.1394.446-2.2133.149-0.2610.7193.128-3.846-7.73833.509
129II_DA30DG31:DC262DT263_JJ-0.238-1.1673.697-8.7127.88833.76-3.164-1.0033.30913.114.46835.691
134II_DA35DT36:DA257DT258_JJ-0.237-0.8793.4660.054-3.61132.613-0.890.433.54-6.406-0.09632.807
140II_DA41DA42:DT251DT252_JJ-0.5220.1243.6950.67616.80433.269-2.3670.9233.36427.289-1.09737.171
141II_DA42DA43:DT250DT251_JJ0.271-0.8352.933-3.0897.85726.037-3.436-1.2292.52916.8846.63827.349
142II_DA43DC44:DG249DT250_JJ0.619-0.2993.2175.1972.62229.472-1.113-0.1313.2385.092-10.09230.029
150II_DA51DT52:DA241DT242_JJ-0.201-0.6772.778-2.2586.06629.627-2.3120.0072.59911.6874.35130.31
153II_DA54DA55:DT238DT239_JJ-0.1990.4233.938-0.4245.37626.851-0.7280.2933.94811.4310.90227.377
154II_DA55DA56:DT237DT238_JJ-0.4110.8713.078-1.59.05441.2080.3040.4213.20312.6752.142.175
155II_DA56DA57:DT236DT237_JJ0.7471.3283.6914.108-2.88842.0812.169-0.5633.65-4.005-5.69742.366
156II_DA57DG58:DC235DT236_JJ0.3940.853.6840.325-13.04436.4333.033-0.5523.209-20.087-0.50138.624
160II_DA61DT62:DA231DT232_JJ-0.639-1.2652.839-5.7662.57330.115-2.8240.2222.7944.88510.94630.755
166II_DA67DG68:DC225DT226_JJ1.6440.683.158-2.571-12.79538.0752.329-2.6622.69-18.9453.80640.171
171II_DA72DA73:DT220DT221_JJ0.237-0.0723.3393.0112.30833.951-0.4960.0853.3353.937-5.13634.156
172II_DA73DT74:DA219DT220_JJ-0.337-0.8133.466-3.04316.88528.105-4.3450.0722.59831.3465.6532.838
176II_DA77DG78:DC215DT216_JJ1.2730.8933.2284.473-0.04633.781.532-1.4533.363-0.078-7.65634.066
181II_DA82DA83:DT210DT211_JJ0.529-0.0993.3030.7337.36233.341-1.347-0.7833.2212.638-1.25834.129
182II_DA83DC84:DG209DT210_JJ0.104-0.2593.3351.9411.6630.499-0.8260.1933.3173.149-3.68130.603
184II_DA85DT86:DA207DT208_JJ0.003-0.6583.0350.0136.85131.144-2.33-0.0032.82912.57-0.02331.871
194II_DA95DT96:DA197DT198_JJ-0.201-0.8232.844-5.2141.00431.969-1.629-0.442.8141.8079.38532.395
198II_DA99DG100:DC193DT194_JJ1.6730.8292.613-8.935-13.55635.2692.412-3.2891.733-21.05113.87538.718
1101II_DA102DG103:DC190DT191_JJ-0.632-0.7873.389-7.1024.35331.673-2.18-0.1573.3157.80812.73932.723
1108II_DA109DA110:DT183DT184_JJ0.421-0.2443.7742.54413.01130.287-2.965-0.2453.40923.536-4.60232.999
1109II_DA110DA111:DT182DT183_JJ-0.531-0.3143.016-13.676-4.82340.3210.031-0.5833.049-6.73919.10842.747
1110II_DA111DT112:DA181DT182_JJ-0.236-0.83.6061.063-10.34929.0170.8090.6823.658-19.866-2.0430.788
1112II_DA113DC114:DG179DT180_JJ-0.195-0.7783.3633.6599.83132.272-2.9040.9182.96717.132-6.37733.891
1114II_DA115DC116:DG177DT178_JJ-0.02-0.5493.671-7.161-4.54832.057-0.093-1.3343.632-8.06112.69233.132
1122II_DA124DG125:DC168DT169_JJ0.703-0.9673.875-8.5114.36834.306-3.511-2.282.99922.76413.48338.044
1124II_DA126DA127:DT166DT167_JJ0.4660.1982.96-13.8580.94140.1330.189-1.8972.6691.32419.542.375
1125II_DA127DT128:DA165DT166_JJ-0.267-1.1083.319-1.357-10.4133.463-0.1680.2263.505-17.5512.28735.026
1131II_DA133DG134:DC159DT160_JJ-0.065-0.7513.502-3.34110.99231.555-3.175-0.4563.06719.4255.90433.531
1137II_DA139DT140:DA153DT154_JJ0.469-1.0763.735-0.979-4.93235.426-0.926-0.9273.831-8.0541.59835.77
1139II_DA141DT142:DA151DT152_JJ0.254-0.9083.2596.5171.37832.679-1.8120.6393.2092.418-11.43433.333
13II_DC3DA4:DT289DG290_JJ-0.6960.7693.5432.766.54731.9780.1231.7573.55611.704-4.93332.737
18II_DC9DC10:DG283DG284_JJ-0.8391.152.7540.324.96126.1851.3621.8932.90810.827-0.69726.645
19II_DC10DA11:DT282DG283_JJ-1.0210.2973.755-5.21712.09234.32-1.4970.7733.75519.628.46536.689
111II_DC12DC13:DG280DG281_JJ0.784-1.0413.3942.40419.58932.798-3.994-0.9062.46131.403-3.85538.138
112II_DC13DT14:DA279DG280_JJ-0.7881.0463.528-1.0416.95530.575-1.2671.1293.62329.4711.80734.879
115II_DC16DA17:DT276DG277_JJ1.3641.9293.2124.613-23.10143.6713.815-1.3342.124-28.709-5.73349.345
121II_DC22DT23:DA270DG271_JJ-0.505-0.633.2831.3628.0730.271-2.6541.1862.99515.109-2.54931.332
124II_DC25DC26:DG267DG268_JJ0.117-0.2132.63612.031-4.96535.4960.1971.0922.549-7.827-18.96537.734
125II_DC26DA27:DT266DG267_JJ0.1642.443.4352.04-22.49949.7593.921-0.0662.225-25.293-2.29454.348
143II_DC44DT45:DA248DG249_JJ-0.176-0.1353.72-4.1439.65232.312-1.991-0.4543.5316.7987.21133.933
146II_DC47DT48:DA245DG246_JJ-0.1011.8063.5025.695-10.51242.8243.3730.6662.965-14.072-7.62444.386
148II_DC49DC50:DG243DG244_JJ-0.5340.452.7482.097-1.97835.0380.991.1442.684-3.278-3.47635.152
149II_DC50DA51:DT242DG243_JJ0.167-0.0473.7645.51515.27433.444-2.4450.5933.41224.807-8.95737.077
152II_DC53DA54:DT239DG240_JJ-0.0260.0153.2699.65626.78913.409-5.1021.8971.41561.424-22.14131.416
159II_DC60DA61:DT232DG233_JJ-0.530.3523.941-3.3412.92836.121-1.4530.2923.87120.0275.17338.433
165II_DC66DA67:DT226DG227_JJ-0.8881.4513.4720.844-3.35142.9852.3181.2953.338-4.565-1.1543.117
168II_DC69DT70:DA223DG224_JJ0.7451.4423.5035.49-8.82141.3932.911-0.4483.213-12.249-7.62342.622
175II_DC76DA77:DT216DG217_JJ-0.3271.9783.7720.4160.63444.1312.5640.483.7950.844-0.55344.137
178II_DC79DT80:DA213DG214_JJ1.3271.3663.4217.465-1.57841.6712.064-1.0183.545-2.197-10.38942.333
183II_DC84DA85:DT208DG209_JJ-0.1880.343.7722.70212.48533.135-1.5910.7753.63620.948-4.53435.447
187II_DC88DC89:DG204DG205_JJ0.4811.493.8181.891-11.39545.8322.904-0.4283.392-14.365-2.38347.189
188II_DC89DT90:DA203DG204_JJ-1.0030.2983.278-4.55-5.72131.521.5640.9833.283-10.3578.23732.335
1100II_DC101DA102:DT191DG192_JJ0.450.6493.3157.1883.64341.6120.5140.1363.3865.071-10.00642.351
1106II_DC107DC108:DG185DG186_JJ-0.3390.9123.2250.886-0.32728.1211.9510.9013.202-0.672-1.82428.136
1107II_DC108DA109:DT184DG185_JJ0.6252.0683.3078.986-10.12146.2923.304-0.0842.887-12.561-11.15248.125
1113II_DC114DA115:DT178DG179_JJ0.5660.513.111-7.17615.50834.318-1.122-1.7442.90124.49211.33338.222
1115II_DC116DT118:DA175DG177_JJ-2.281-2.5875.199-22.63613.56476.591-2.590.7925.16810.65117.77580.345
1127II_DC129DT130:DA163DG164_JJ-1.5660.6983.11111.944-4.13139.2381.3853.362.469-5.966-17.2541.146
1130II_DC132DA133:DT160DG161_JJ0.3291.3423.551.10116.48330.772-0.754-0.3493.77728.621-1.91234.831
114II_DG15DC16:DG277DC278_JJ-1.2880.7033.455-12.7253.74736.5020.5390.1743.7355.75419.54138.76
117II_DG18DA19:DT274DC275_JJ0.054-0.7683.7435.826-1.47838.968-0.9380.7123.738-2.2-8.67139.411
130II_DG31DT32:DA261DC262_JJ-0.1770.2462.9266.3728.64431.001-0.9061.3032.80215.598-11.49732.765
132II_DG33DT34:DA259DC260_JJ0.112-1.0363.694-3.6025.01132.018-2.81-0.8913.4638.986.45632.592
138II_DG39DG40:DC253DC254_JJ-0.4761.383.102-14.1541.87937.4161.806-0.9123.1372.80721.14639.956
139II_DG40DA41:DT252DC253_JJ-0.9520.9823.0884.8516.338.4190.7481.973.0679.451-7.27739.203
145II_DG46DC47:DG246DC247_JJ-0.690.0712.925-3.3076.05735.839-0.6470.6882.9489.7325.31336.476
157II_DG58DG59:DC234DC235_JJ1.481.6623.438.144-1.32239.5222.572-1.1483.598-1.929-11.88740.341
158II_DG59DC60:DG233DC234_JJ-0.4270.452.869-4.8475.58338.1760.0680.1132.9348.4397.32738.859
162II_DG63DT64:DA229DC230_JJ-0.723-0.9493.254-11.0626.51630.651-2.764-0.6043.06611.70419.86833.172
167II_DG68DC69:DG224DC225_JJ-0.8030.3523.5394.021-2.43533.1871.0362.0973.387-4.237-6.99633.509
170II_DG71DA72:DT221DC222_JJ-0.923-0.4893.667-1.73914.55933.596-2.9911.2063.23223.8292.84636.571
177II_DG78DC79:DG214DC215_JJ-1.2711.6433.093-8.356-5.97741.0022.8640.9493.026-8.37511.70942.216
180II_DG81DA82:DT211DC212_JJ-0.7020.4232.886-8.5788.85433.312-0.51-0.0152.98414.82814.36635.459
186II_DG87DC88:DG205DC206_JJ-1.9670.8493.615-11.096-18.76140.6372.9361.433.343-24.96814.76745.895
193II_DG94DA95:DT198DC199_JJ-0.498-0.4323.4921.3489.48125.384-3.421.4173.10120.661-2.93827.102
196II_DG97DG98:DC195DC196_JJ0.0070.6093.51111.416.27733.694-1.3031.5413.325.515-17.8738.971
197II_DG98DA99:DT194DC195_JJ-1.2961.3053.634-10.953-2.22243.4751.9440.5543.77-2.94214.50344.821
199II_DG100DC101:DG192DC193_JJ-1.057-0.1533.386-1.7441.24235.895-0.4321.4533.4252.0132.82635.957
1102II_DG103DT104:DA189DC190_JJ-0.753-0.5243.409-1.7897.29428.552-2.6291.0873.21914.4763.55129.504
1119II_DG121DG122:DC171DC172_JJ-0.271-0.2762.997-1.7480.6237.341-0.5060.2113.0010.9682.72937.385
1120II_DG122DT123:DA170DC171_JJ0.028-0.7643.64-0.583-13.34631.6181.146-0.1533.657-23.2391.01634.258
1123II_DG125DA126:DT167DC168_JJ-0.359-0.2643.635-0.827-5.35336.1370.4050.4453.643-8.5691.32336.527
1129II_DG131DC132:DG161DC162_JJ-0.3742.4322.101-19.558-17.83747.1853.302-0.2561.228-20.51222.49253.73
1132II_DG134DG135:DC158DC159_JJ-0.559-0.7463.421-1.28411.66929.995-3.4540.7772.95321.5372.36932.162
1133II_DG135DT136:DA157DC158_JJ1.3210.463.0917.801-0.86332.9540.928-1.0233.296-1.495-13.51533.85
1135II_DG137DG138:DC155DC156_JJ0.5380.2753.189-3.8296.034.544-0.414-1.4423.1169.9736.36535.248
1136II_DG138DA139:DT154DC155_JJ-0.8170.3412.785-4.311-4.10535.641.0480.7942.806-6.6496.98236.118
1142II_DG144DA145:DT148DC149_JJ0.691-0.7393.996.71318.38235.075-3.599-0.093.29827.977-10.21640.014
12II_DT2DC3:DG290DA291_JJ1.0130.7583.1116.6685.28341.9870.516-0.733.2957.283-9.19242.802
16II_DT6DA7:DT286DA287_JJ0.25-0.053.444-3.9273.0237.658-0.481-0.913.3884.6546.05137.971
113II_DT14DG15:DC278DA279_JJ0.4052.393.17910.529-10.61242.0164.0440.3442.558-14.269-14.15744.482
119II_DT20DT21:DA272DA273_JJ0.078-0.4023.81-6.58810.4737.919-1.985-0.9933.52115.6139.82439.815
120II_DT21DC22:DG271DA272_JJ0.2240.2133.65-4.0454.7440.155-0.282-0.8263.6126.8545.84840.616
122II_DT23DA24:DT269DA270_JJ0.5070.9893.6084.7024.94538.9470.805-0.1253.7357.348-6.98639.518
131II_DT32DG33:DC260DA261_JJ-0.178-0.173.360.75113.90130.715-2.6070.4333.00124.713-1.33633.654
133II_DT34DA35:DT258DA259_JJ-0.1360.3943.203-0.681.09940.4880.4480.1233.2141.5870.98340.508
135II_DT36DT37:DA256DA257_JJ-0.269-0.5723.810.6322.3435.501-1.3310.5483.7613.832-1.03435.581
136II_DT37DT38:DA255DA256_JJ-0.5270.843.348-2.429-3.16942.4151.4820.4763.303-4.3683.34942.594
137II_DT38DG39:DC254DA255_JJ1.0852.0943.104-0.379-1.20731.6344.047-2.0553.011-2.2120.69531.658
144II_DT45DG46:DC247DA248_JJ0.4942.0943.2195.668-3.94641.6833.298-0.1243.056-5.5-7.90142.226
147II_DT48DC49:DG244DA245_JJ-0.3770.0333.21-6.9654.89534.485-0.659-0.3963.1988.10411.53235.489
151II_DT52DC53:DG240DA241_JJ0.890.9963.451-1.6428.333.3890.277-1.7823.54314.1652.80234.415
161II_DT62DG63:DC230DA231_JJ0.1611.0053.6751.4475.09835.2260.793-0.0223.7828.365-2.37435.61
163II_DT64DT65:DA228DA229_JJ0.1120.1772.62510.491.18432.6030.1491.152.5432.044-18.10334.225
164II_DT65DC66:DG227DA228_JJ0.9590.0213.626-1.523.61135.908-0.529-1.7853.5695.8352.45736.114
169II_DT70DG71:DC222DA223_JJ0.7210.9733.0543.5076.58731.6930.614-0.6893.24411.856-6.31232.538
173II_DT74DT75:DA218DA219_JJ0.423-0.1432.7267.7892.78333.43-0.6090.3142.7324.748-13.28834.41
174II_DT75DC76:DG217DA218_JJ0.0950.6773.477-2.4139.85628.62-0.885-0.7153.49319.1914.69830.33
179II_DT80DG81:DC212DA213_JJ-0.6931.1383.5810.9489.32734.7870.331.2753.73315.261-1.55235.99
185II_DT86DG87:DC206DA207_JJ1.0450.4843.47-0.21812.10633.192-1.156-1.763.42620.3670.36735.273
189II_DT90DT91:DA202DA203_JJ0.453-0.2673.0284.273-2.17437.81-0.151-0.1873.07-3.339-6.56238.101
190II_DT91DT92:DA201DA202_JJ0.9430.8912.9751.2453.56832.241.011-1.4843.0876.397-2.23232.455
191II_DT92DT93:DA200DA201_JJ0.002-0.4763.8768.01923.45427.169-4.4631.2642.59940.776-13.94136.62
192II_DT93DG94:DC199DA200_JJ0.2140.4743.57-5.64620.97827.225-2.892-1.3513.06437.84410.18634.702
195II_DT96DG97:DC196DA197_JJ0.3631.1333.260.598-0.38837.3571.82-0.4873.253-0.605-0.93437.363
1103II_DT104DT105:DA188DA189_JJ0.338-0.633.071-1.0372.23431.685-1.531-0.7943.0084.0831.89531.778
1104II_DT105DT106:DA187DA188_JJ0.076-0.3843.2889.0664.99437.63-1.1820.9853.1487.568-13.7438.978
1105II_DT106DC107:DG186DA187_JJ1.3780.7493.5219.311-0.36439.9821.113-0.8263.73-0.524-13.39841.01
1111II_DT112DA113:DT180DA181_JJ0.405-0.4473.0615.178.57736.735-1.701-0.012.91613.308-8.02138.03
1116II_DT118DT119:DA174DA175_JJ-0.997-0.5983.0836.547-39.37735.0341.9961.5682.406-49.666-8.25852.635
1117II_DT119DT120:DA173DA174_JJ0.0641.1153.571.475-18.54941.2653.1680.0532.844-24.856-1.97645.098
1118II_DT120DG121:DC172DA173_JJ0.5951.5173.083-9.2194.82541.6811.618-1.6853.046.65712.7242.904
1121II_DT123DA124:DT169DA170_JJ-0.0190.3574.36716.63622.22632.62-2.6292.3623.55133.102-24.77642.589
1126II_DT128DC129:DG164DA165_JJ-0.9950.3753.796-3.127-19.98837.9762.8161.0023.283-28.3924.44242.853
1128II_DT130DG131:DC162DA163_JJ0.5961.0644.18910.58921.15532.374-1.90.8584.12433.012-16.52439.909
1134II_DT136DG137:DC156DA157_JJ-0.1350.1393.5943.91620.41828.998-3.1120.8633.01235.582-6.82435.55
1138II_DT140DA141:DT152DA153_JJ-0.5240.3383.066-1.9280.24737.3610.4960.5783.090.3853.00737.41
1140II_DT142DT143:DA150DA151_JJ0.2470.5792.9343.3933.6332.6130.4580.092.9896.418-5.99832.979
1141II_DT143DG144:DC149DA150_JJ-0.169-0.5553.772-5.21310.99334.811-2.576-0.5373.43617.7198.40136.814

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.