A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: NA1140  PDB ID: 3AZE 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11I_DA1:DT292_J0.148-0.006-0.097-35.15225.0641.318
14I_DA4:DT289_J-0.061-0.116-0.4346.231-16.1192.893
15I_DA5:DT288_J0.2630.0090.22615.665-21.646-1.6
17I_DA7:DT286_J0.2370.034-0.249-0.068-18.572-10.366
111I_DA11:DT282_J0.025-0.003-0.346-1.5349.01-13.049
117I_DA17:DT276_J-0.0240.022-0.271-4.162-32.661-4.195
119I_DA19:DT274_J0.0130.035-0.706-14.899-10.9484.634
124I_DA24:DT269_J-0.0070.115-0.424-25.523-19.891-10.815
127I_DA27:DT266_J-0.1720.123-0.85-22.688-43.139-9.909
128I_DA28:DT265_J0.017-0.148-0.1363.212-15.2540.287
129I_DA29:DT264_J0.161-0.0680.2685.542-20.729-5.392
130I_DA30:DT263_J0.146-0.0480.0432.81-17.073-0.733
135I_DA35:DT258_J-0.0280.056-0.849-35.311-16.536-3.594
141I_DA41:DT252_J3.2252.133-1.241-3.89931.362-159.717
142I_DA42:DT251_J-0.0670.152-0.724-25.938-23.95-6.402
143I_DA43:DT250_J0.042-0.0790.105-9.756-4.1560.571
151I_DA51:DT242_J0.0680.001-0.099-4.342-5.26-2.866
154I_DA54:DT239_J0.174-0.177-1.347-15.941.739-9.192
155I_DA55:DT238_J-0.203-0.191-0.936-15.23-14.1877.849
156I_DA56:DT237_J0.129-0.093-0.20111.565-20.763-6.719
157I_DA57:DT236_J0.57-0.1271.20326.145-35.106-24.21
161I_DA61:DT232_J0.069-0.103-0.163-10.654-17.8610.515
167I_DA67:DT226_J0.313-0.1610.50710.788-39.068-10.275
172I_DA72:DT221_J0.0750.0230.1330.604-11.295-10.08
173I_DA73:DT220_J0.139-0.077-0.1213.185-2.1112.865
177I_DA77:DT216_J0.2250.1170.0051.754-25.895-8.169
182I_DA82:DT211_J0.09-0.088-0.44.511-19.064-3.778
183I_DA83:DT210_J0.147-0.1160.0151.875-3.6923.559
185I_DA85:DT208_J-0.011-0.123-0.951-12.734-20.9773.567
195I_DA95:DT198_J0.120.15-0.502-5.342.308-12.477
199I_DA99:DT194_J0.235-0.0770.2868.148-33.606-14.332
1102I_DA102:DT191_J0.168-0.105-0.0383.594-19.2385.303
1109I_DA109:DT184_J0.069-0.1910.811.217-8.022-1.676
1110I_DA110:DT183_J0.009-0.078-0.0127.718-2.1580.834
1111I_DA111:DT182_J0.075-0.0880.1659.655-2.6050.142
1113I_DA113:DT180_J-0.038-0.091-0.177-20.453-6.5451.621
1115I_DA115:DT178_J0.186-0.414-1.3520.006-3.969-1.268
1124I_DA124:DT169_J0.0070.049-0.515-4.898-45.746-6.923
1126I_DA126:DT167_J-0.2320.091-1.439-42.639-31.6375.064
1127I_DA127:DT166_J0.221-0.040.508-8.682-10.319-10.415
1133I_DA133:DT160_J0.0170.103-0.551-19.933-29.289-6.884
1139I_DA139:DT154_J0.108-0.1040.3663.261-8.018-2.084
1141I_DA141:DT152_J0.166-0.014-0.072-6.694-25.299-10.943
13I_DC3:DG290_J-0.0770.005-0.3483.561-7.06-0.936
19I_DC9:DG284_J-0.006-0.017-0.01-5.847-9.993-2.013
110I_DC10:DG283_J0.026-0.0030.036-3.252-5.844-0.658
112I_DC12:DG281_J-0.003-0.02-0.31110.593-1.79-2.595
113I_DC13:DG280_J0.1470.035-0.2259.105-12.041-0.076
116I_DC16:DG277_J0.193-0.022-0.42819.784-10.743-5.988
122I_DC22:DG271_J0.044-0.18-0.394-14.8-11.0660.599
125I_DC25:DG268_J-0.14-0.0960.435-15.166-5.283-5.723
126I_DC26:DG267_J-0.021-0.111.328-19.128-4.927-3.145
144I_DC44:DG249_J0.010.058-0.0590.119-6.353-0.272
147I_DC47:DG246_J-0.044-0.0761.12-17.894-17.847-6.4
149I_DC49:DG244_J0.0070.0150.289-2.892-13.567-2.446
150I_DC50:DG243_J0.055-0.0360.732-11.598-13.489-4.138
153I_DC53:DG240_J0.1870.009-0.69720.982-12.9360.763
160I_DC60:DG233_J0.068-0.3911.0497.415.5618.066
166I_DC66:DG227_J0.080.041-0.36513.748-1.921.235
169I_DC69:DG224_J-0.104-0.170.8324.963-16.55-5.738
176I_DC76:DG217_J-0.004-0.064-0.0085.713-5.256-2.867
179I_DC79:DG214_J-0.009-0.1240.862-8.201-21.785-4.6
184I_DC84:DG209_J0.052-0.1220.1453.032-0.934-0.258
188I_DC88:DG205_J-0.059-0.2040.6511.568-36.81-6.337
189I_DC89:DG204_J-0.054-0.0250.358-26.117-8.245-5.251
1101I_DC101:DG192_J0.181-0.081-0.0712.995-25.1931.106
1107I_DC107:DG186_J0.059-0.035-0.284-0.602-11.815-0.418
1108I_DC108:DG185_J0.154-0.161-0.05414.443-19.525-7.754
1114I_DC114:DG179_J0.163-0.064-0.41516.069-8.565-2.677
1116I_DC116:DG177_J-0.02-0.069-0.699-6.53113.513-4.483
1129I_DC129:DG164_J-0.004-0.0810.708-3.078-17.351-3.867
1132I_DC132:DG161_J0.006-0.1750.29616.491-28.342-7.613
115I_DG15:DC278_J-0.193-0.022-0.069-8.638-19.565-2.074
118I_DG18:DC275_J-0.096-0.115-0.1872.658-21.0581.894
131I_DG31:DC262_J0.057-0.155-0.077-4.566-12.317-3.855
133I_DG33:DC260_J-0.105-0.0670.5016.758-9.488-1.643
139I_DG39:DC254_J-0.1820.0020.13213.5364.676-0.897
140I_DG40:DC253_J0.029-0.1751.7125.528-3.898-5.681
146I_DG46:DC247_J-0.229-0.059-0.655-9.055-8.1551.555
158I_DG58:DC235_J0.021-0.1960.9178.056-23.099-6.14
159I_DG59:DC234_J-0.045-0.1610.9247.055.823-2.794
163I_DG63:DC230_J-0.09-0.044-0.3174.766-0.151-3.829
168I_DG68:DC225_J0.029-0.0110.33611.92-5.241-5.126
171I_DG71:DC222_J-0.106-0.143-0.783-5.151-9.2291.826
178I_DG78:DC215_J-0.061-0.1380.45-15.41-4.7761.252
181I_DG81:DC212_J-0.196-0.016-0.601-5.407-17.3931.316
187I_DG87:DC206_J-0.145-0.046-0.287-2.47717.1812.243
194I_DG94:DC199_J-0.01-0.16-0.915-4.5680.968-2.823
197I_DG97:DC196_J-0.039-0.0880.49510.767-8.695-1.959
198I_DG98:DC195_J-0.019-0.19-0.3617.841-22.0192.858
1100I_DG100:DC193_J-0.047-0.0470.1795.421-14.3831.896
1103I_DG103:DC190_J0.034-0.0290.2045.989-10.062-5.67
1121I_DG121:DC172_J-0.114-0.1321.58327.29-1.108-0.442
1122I_DG122:DC171_J0.0570.0420.1889.302-16.7430.571
1125I_DG125:DC168_J-0.092-0.083-0.359-17.632-22.94-0.863
1131I_DG131:DC162_J-0.131-0.158-0.12-1.305-10.146-5.684
1134I_DG134:DC159_J-0.104-0.005-0.2-14.698-3.036-0.028
1135I_DG135:DC158_J-0.016-0.0430.456-2.768-1.907-0.333
1137I_DG137:DC156_J-0.264-0.173-0.928-7.192-13.3023.733
1138I_DG138:DC155_J-0.2-0.06-0.645-7.045-7.216-0.073
1144I_DG144:DC149_J-0.073-0.285-1.221.5343.065-1.867
12I_DT2:DA291_J-0.204-0.0990.995-16.128-5.117-13.274
16I_DT6:DA287_J-0.03-0.094-0.56820.547-5.432-3.544
18I_DT8:DA285_J-0.0590.036-0.2439.951-6.513-3.824
114I_DT14:DA279_J-0.08-0.2410.7991.093-14.465-7.924
120I_DT20:DA273_J-0.094-0.04-0.18812.101-27.952-8.178
121I_DT21:DA272_J-0.003-0.096-0.601-1.436-16.0450.655
123I_DT23:DA270_J-0.330.2440.46-36.745-20.789-10.172
132I_DT32:DA261_J-0.0890.0370.235-9.238-6.167-10.038
134I_DT34:DA259_J-0.065-0.0650.49517.8327.8224.771
136I_DT36:DA257_J-0.057-0.2341.134-11.566-0.5291.16
137I_DT37:DA256_J-0.047-0.0660.385-6.27-13.902-5.131
138I_DT38:DA255_J-0.3180.0320.029-5.318-29.947-14.872
145I_DT45:DA248_J-0.206-0.287-1.015-5.918-15.0746.256
148I_DT48:DA245_J-0.259-0.0990.778-19.24-10.2071.142
152I_DT52:DA241_J-0.1720.0380.190.887-3.717-11.825
162I_DT62:DA231_J-0.122-0.2030.5821.542-8.32-8.398
164I_DT64:DA229_J-0.13-0.017-0.034-0.0792.286-2.397
165I_DT65:DA228_J-0.1690.124-0.4313.198-6.059-8.82
170I_DT70:DA223_J-0.1670.02-0.244-1.676-1.012-5.901
174I_DT74:DA219_J-0.146-0.118-0.25811.014-10.527-1.859
175I_DT75:DA218_J-0.272-0.068-0.2823.348-6.414-0.708
180I_DT80:DA213_J-0.2290.0080.623-6.414-7.95-3.819
186I_DT86:DA207_J0.017-0.089-0.6963.701-18.6033.414
190I_DT90:DA203_J-0.0140.016-0.319-20.957-4.91-6.298
191I_DT91:DA202_J-0.0530.0460.068-17.122-13.989-2.919
192I_DT92:DA201_J0.064-0.0950.054-14.252-18.458-0.505
193I_DT93:DA200_J0.139-0.246-0.2020.3790.995.875
196I_DT96:DA197_J0.083-0.1890.379-0.176-2.6341.69
1104I_DT104:DA189_J-0.172-0.0180.39420.1940.128-3.077
1105I_DT105:DA188_J0.755-2.0751.93626.90513.068102.267
1106I_DT106:DA187_J-0.0910.028-0.6760.361-4.77-8.403
1112I_DT112:DA181_J-0.09-0.1440.225.453-8.7742.522
1117I_DT117:DA176_J-0.102-0.0050.119-16.937-3.71-5.247
1118I_DT118:DA175_J-0.2030.0461.093-25.287-12.05-10.927
1119I_DT119:DA174_J-0.166-0.4561.626-20.286-10.3331.866
1120I_DT120:DA173_J-0.238-0.1170.541.086-34.169-13.078
1123I_DT123:DA170_J0.0590.215-0.95937.787-23.418-11.216
1128I_DT128:DA165_J-0.166-0.231.173-19.406-6.4182.975
1130I_DT130:DA163_J-0.263-0.0240.084-10.268-28.714-5.707
1136I_DT136:DA157_J-0.089-0.053-0.341-3.2210.712-7.521
1140I_DT140:DA153_J-0.172-0.0410.428-5.843-9.712-0.827
1142I_DT142:DA151_J-0.153-0.021-0.046-11.197-18.318-2.797
1143I_DT143:DA150_J-0.065-0.307-1.1271.999-8.0272.999

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.