A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: NA1140  PDB ID: 3AZE 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11II_DA1DT2:DA291DT292_JJ-1.39-0.7983.289-4.594-9.44232.0270.271.5993.536-16.5658.0633.662
14II_DA4DA5:DT288DT289_JJ-0.128-0.0273.021-4.156-3.90739.8620.37-0.2493.009-5.6946.05940.251
15II_DA5DT6:DA287DT288_JJ0.564-0.7623.0448.3572.35827.952-1.9930.63.014.738-16.79629.244
17II_DA7DT8:DA285DT286_JJ0.402-0.4622.987-0.975-6.94637.9180.095-0.7213.011-10.5791.48538.538
111II_DA11DC12:DG281DT282_JJ0.493-0.5793.101-1.652-0.01129.026-1.152-1.3243.069-0.0223.29329.072
117II_DA17DG18:DC275DT276_JJ0.8050.9313.07-0.79713.02235.577-0.22-1.3433.18820.4811.25437.821
119II_DA19DT20:DA273DT274_JJ-0.458-0.3332.728-4.515-7.99635.2380.4180.1962.771-12.9397.30636.378
124II_DA24DC25:DG268DT269_JJ-0.0120.6022.993-8.8430.4436.3720.886-1.0492.9240.69213.91537.399
127II_DA27DA28:DT265DT266_JJ0.206-0.1472.679-9.497-12.39933.3481.16-1.3942.436-20.28115.53536.73
128II_DA28DA29:DT264DT265_JJ-0.5120.3712.824-4.003-1.56641.7120.6610.3532.844-2.1925.60441.923
129II_DA29DA30:DT263DT264_JJ0.088-0.9253.2471.603-0.3437.376-1.3980.0723.255-0.53-2.537.41
130II_DA30DG31:DC262DT263_JJ-0.578-0.2673.302-1.3014.88835.266-1.1530.7543.2558.0182.13435.616
135II_DA35DT36:DA257DT258_JJ-0.087-0.1762.698-17.7960.00330.15-0.294-2.1142.3820.00531.04634.905
141II_DA41DA42:DT251DT252_JJ-2.4972.003-1.176-71.188-121.10666.7960.5231.608-1.053-67.94539.939147.209
142II_DA42DA43:DT250DT251_JJ-0.690.092.96-15.564-6.40833.7730.934-0.862.928-10.27524.95937.625
143II_DA43DC44:DG249DT250_JJ0.393-1.1263.0593.8839.29132.379-3.275-0.1152.67216.179-6.76133.869
151II_DA51DT52:DA241DT242_JJ-0.49-0.463.211-0.2934.78529.296-1.8760.8963.1039.3810.57529.678
154II_DA54DA55:DT238DT239_JJ0.99-0.253.301-4.65714.06330.95-2.589-2.3982.76124.668.16634.235
155II_DA55DA56:DT237DT238_JJ-1.1190.3532.747-1.724-3.73934.9571.0521.6352.746-6.1972.85735.191
156II_DA56DA57:DT236DT237_JJ0.241.292.9560.111-17.23740.2643.11-0.3142.248-23.767-0.15243.657
157II_DA57DG58:DC235DT236_JJ0.814-0.0693.6491.977-7.82937.8040.981-0.9563.628-11.917-3.0138.626
161II_DA61DT62:DA231DT232_JJ-0.137-0.3533.032-7.665-1.90132.528-0.319-0.9473.001-3.33213.43733.448
167II_DA67DG68:DC225DT226_JJ0.9080.3523.3430.0430.6134.6030.496-1.5193.3491.025-0.07334.608
172II_DA72DA73:DT220DT221_JJ0.551-0.1883.2963.1476.98433.033-1.458-0.4333.22812.081-5.44333.885
173II_DA73DT74:DA219DT220_JJ-0.361-0.6262.97-0.9253.0329.499-1.7980.5312.9025.9281.8129.665
177II_DA77DG78:DC215DT216_JJ1.130.8283.670.816-6.36838.3652.1-1.5883.516-9.608-1.23138.879
182II_DA82DA83:DT210DT211_JJ0.52-0.3873.242-2.51311.5330.926-2.567-1.3262.86920.7024.51233.05
183II_DA83DC84:DG209DT210_JJ0.2-0.4083.5442.1171.1328.461-1.1060.1153.532.293-4.29728.56
185II_DA85DT86:DA207DT208_JJ0.2080.1052.721-2.6244.50933.255-0.429-0.7162.6877.8184.5533.651
195II_DA95DT96:DA197DT198_JJ0.128-1.1413.332-3.762.22826.266-3.064-1.2653.1764.8618.20226.621
199II_DA99DG100:DC193DT194_JJ1.36-0.1273.3053.6253.86534.352-0.82-1.7083.3926.496-6.09334.746
1102II_DA102DG103:DC190DT191_JJ-0.428-0.1673.243-6.6696.88837.011-1.124-0.1873.18910.63310.29538.191
1109II_DA109DA110:DT183DT184_JJ0.467-1.1383.3916.497-2.31530.235-1.6540.463.489-4.367-12.25630.994
1110II_DA110DA111:DT182DT183_JJ-0.179-0.1423.091-6.2571.87236.996-0.452-0.4963.0692.9229.76737.548
1111II_DA111DT112:DA181DT182_JJ-0.076-0.9133.457-0.616-5.7335.231-0.5950.0273.557-9.3891.00935.685
1113II_DA113DC114:DG179DT180_JJ0.0750.3582.4324.082.77632.4320.2760.3922.4444.935-7.25232.796
1115II_DA115DC116:DG177DT178_JJ0.103-0.8013.67-3.52813.32935.065-3.119-0.6563.14721.145.59537.6
1124II_DA124DG125:DC168DT169_JJ0.0180.14.036-8.26-4.57939.340.78-1.1713.919-6.68612.05940.414
1126II_DA126DA127:DT166DT167_JJ-0.8470.0812.257-18.726-0.0135.7860.119-0.3772.397-0.01528.22140.247
1127II_DA127DT128:DA165DT166_JJ0.435-1.0873.495-1.735-8.55835.61-0.431-0.9563.626-13.742.78636.631
1133II_DA133DG134:DC159DT160_JJ0.2670.3423.214-8.13913.25926.884-1.917-2.0712.87125.94415.92530.989
1139II_DA139DT140:DA153DT154_JJ0.069-0.8333.6612.313-13.46337.9720.5670.2053.732-19.92-3.42240.269
1141II_DA141DT142:DA151DT152_JJ0.227-0.9193.2820.0432.48435.038-1.891-0.373.2124.12-0.07135.124
13II_DC3DA4:DT289DG290_JJ-0.3270.8633.3862.797.83633.8360.1760.9983.45713.216-4.70634.814
19II_DC9DC10:DG283DG284_JJ0.6070.4283.2286.0577.76634.845-0.425-0.1093.30112.659-9.87336.168
110II_DC10DA11:DT282DG283_JJ-1.434-0.0713.25-5.8529.28832.427-1.6321.4873.30816.06710.12434.188
112II_DC12DC13:DG280DG281_JJ0.274-0.5343.3163.213.83731.526-3.0230.0282.85324.002-5.55134.503
113II_DC13DT14:DA279DG280_JJ-0.8430.1493.734-4.6618.3330.93-2.8160.5823.39131.0057.88236.133
116II_DC16DA17:DT276DG277_JJ0.982.8013.8469.183-21.2147.7044.594-0.482.603-24.616-10.65752.712
122II_DC22DT23:DA270DG271_JJ-0.533-0.6744.144-3.90221.11526.901-5.190.1562.92238.5337.12134.296
125II_DC25DC26:DG267DG268_JJ-0.493-0.4993.503-9.7027.81835.899-1.845-0.5793.34412.23815.18837.933
126II_DC26DA27:DT266DG267_JJ-1.162.2523.8173.915-20.64845.7484.1851.6582.54-25.064-4.75350.108
144II_DC44DT45:DA248DG249_JJ-0.481-0.4953.4184.08210.15128.971-2.9191.7022.98519.438-7.81630.927
147II_DC47DT48:DA245DG246_JJ0.9841.2233.3134.731-16.48739.4353.256-0.8922.711-23.151-6.64342.867
149II_DC49DC50:DG243DG244_JJ0.119-0.0213.458-3.8479.19436.872-1.26-0.6963.3314.2195.9538.15
150II_DC50DA51:DT242DG243_JJ0.191-0.3663.082-0.4125.25333.885-1.391-0.3852.9918.9460.70234.281
153II_DC53DA54:DT239DG240_JJ-0.452-0.6714.545-1.40432.52826.876-5.440.4372.45351.442.2241.985
160II_DC60DA61:DT232DG233_JJ-0.516-0.6273.62712.465.91936.282-1.7242.4183.1539.11-19.17738.733
166II_DC66DA67:DT226DG227_JJ-1.8441.6653.463-8.778-9.50742.263.1661.5783.332-12.8311.84644.109
169II_DC69DT70:DA223DG224_JJ0.91.2633.26413.892-9.55741.4452.5460.0963.053-12.882-18.72544.604
176II_DC76DA77:DT216DG217_JJ-0.7991.3013.434-2.4261.46841.3611.6710.8543.5162.0763.4341.454
179II_DC79DT80:DA213DG214_JJ0.9750.1653.3542.129-1.83239.0220.474-1.1933.389-2.739-3.18239.119
184II_DC84DA85:DT208DG209_JJ-0.3-0.1133.76214.717.337.791-2.0261.9943.12124.228-20.58843.871
188II_DC88DC89:DG204DG205_JJ0.5420.9214.016.413-3.12544.3161.5550.0053.976-4.111-8.43744.858
189II_DC89DT90:DA203DG204_JJ-0.9111.1283.329-2.003-12.64135.6013.3271.1562.826-19.8993.15337.761
1101II_DC101DA102:DT191DG192_JJ0.7820.7713.2871.0914.43429.6340.551-1.2813.398.605-2.11829.976
1107II_DC107DC108:DG185DG186_JJ-0.7951.2153.013-2.0085.78431.5461.1991.093.22210.5153.6532.119
1108II_DC108DA109:DT184DG185_JJ0.7641.1473.449-1.918-15.29642.9072.83-1.1572.866-20.1492.52745.469
1114II_DC114DA115:DT178DG179_JJ0.0980.073.890.0711.95530.53-2.345-0.1593.6621.688-0.12732.736
1116II_DC116DT117:DA176DG177_JJ-0.347-0.8813.644-2.096-0.95935.231-1.2940.2243.68-1.5823.45835.304
1129II_DC129DT130:DA163DG164_JJ-0.6673.0133.1544.203-16.78648.8694.3860.9982.024-19.592-4.90551.665
1132II_DC132DA133:DT160DG161_JJ0.150.0584.5095.50328.80636.908-3.3170.4593.64438.875-7.42646.821
115II_DG15DC16:DG277DC278_JJ-0.7660.4152.5350.6098.08632.252-0.3411.422.54714.275-1.07633.23
118II_DG18DA19:DT274DC275_JJ-0.491-0.2873.475-0.4622.54837.205-0.8060.7033.4543.9870.72337.292
131II_DG31DT32:DA261DC262_JJ0.003-1.0393.518-3.2886.23325.876-3.916-0.893.16113.67.17426.802
133II_DG33DT34:DA259DC260_JJ0.277-1.3533.426-7.531-4.50933.57-1.532-1.6983.434-7.64512.76934.667
139II_DG39DG40:DC253DC254_JJ-0.7310.0733.012-11.9435.63737.866-0.512-0.2453.0768.38117.75740.023
140II_DG40DA41:DT252DC253_JJ-4.933-0.3722.653-23.116161.694-94.605-0.66-2.61.737-83.013-11.868-168.723
146II_DG46DC47:DG246DC247_JJ-1.383-0.6233.573-14.603-1.47637.323-0.7110.0493.851-2.20521.81340.009
158II_DG58DG59:DC234DC235_JJ1.2730.3773.353-0.685-10.29940.6161.616-1.8543.15-14.5540.96941.853
159II_DG59DC60:DG233DC234_JJ-0.039-0.5073.769-5.25-6.54533.5530.329-0.8833.761-11.1228.92234.557
163II_DG63DT64:DA229DC230_JJ-0.12-0.913.567-0.75810.04533.545-3.1090.0783.17416.9361.27934.983
168II_DG68DC69:DG224DC225_JJ-0.7160.0063.487-4.677-15.51736.5091.9570.4643.285-23.4047.05439.832
171II_DG71DA72:DT221DC222_JJ-0.241-0.0193.214-10.6098.39733.689-1.206-1.0973.05913.81617.45536.231
178II_DG78DC79:DG214DC215_JJ-1.3621.0783.459-6.584-11.81836.6073.1151.2083.165-18.07510.06938.946
181II_DG81DA82:DT211DC212_JJ-0.1510.373.105-3.879-0.15934.3170.647-0.3173.101-0.2696.54834.529
187II_DG87DC88:DG205DC206_JJ-1.8450.4873.438-5.736-17.99941.3292.3411.8523.191-24.0497.66445.269
194II_DG94DA95:DT198DC199_JJ-1.124-0.2353.173-8.48210.49336.222-1.6550.6523.16316.20113.09738.575
197II_DG97DG98:DC195DC196_JJ0.640.1623.47512.0014.23935.271-0.360.7383.4986.731-19.05637.429
198II_DG98DA99:DT194DC195_JJ-1.3211.5043.058-7.797-9.74442.82.8151.0812.854-13.02410.42244.501
1100II_DG100DC101:DG192DC193_JJ-0.2820.4643.4091.816-3.67243.6960.9810.5563.348-4.921-2.43443.878
1103II_DG103DT104:DA189DC190_JJ0.354-0.4663.052-0.909-1.75434.745-0.53-0.7213.062-2.9351.52134.799
1121II_DG121DG122:DC171DC172_JJ0.4880.2923.81710.47316.1237.923-1.5920.6213.65723.084-14.99742.356
1122II_DG122DT123:DA170DC171_JJ-0.9970.4542.554.936-0.69830.9090.9422.5522.355-1.299-9.18631.298
1125II_DG125DA126:DT167DC168_JJ-0.2440.1464.0344.8739.8440.605-1.060.9673.91213.876-6.87142.003
1131II_DG131DC132:DG161DC162_JJ0.651.5593.086-6.734-12.32542.2583.051-1.4012.436-16.5569.04644.429
1134II_DG134DG135:DC158DC159_JJ-0.846-1.463.001-8.7193.14426.155-3.757-0.2032.9346.68518.54227.722
1135II_DG135DT136:DA157DC158_JJ0.104-0.9793.5017.904-2.97532.953-1.1571.1973.505-5.139-13.65633.989
1137II_DG137DG138:DC155DC156_JJ-0.4270.9833.176-6.9261.51737.8721.305-0.2023.2372.31310.55738.506
1138II_DG138DA139:DT154DC155_JJ-0.202-1.1743.008-7.254-4.41832.381-1.346-0.7883.108-7.75712.73533.448
12II_DT2DC3:DG290DA291_JJ0.458-0.1432.83312.055-9.69439.5630.6870.4672.81-13.702-17.0442.367
16II_DT6DA7:DT286DA287_JJ0.011-0.353.8181.5045.43237.997-1.3180.2013.7338.287-2.29538.398
18II_DT8DC9:DG284DA285_JJ0.483-1.0883.6860.9764.95133.146-2.786-0.6613.5048.617-1.69933.518
114II_DT14DG15:DC278DA279_JJ0.6462.1773.7364.899-12.87142.8794.086-0.3743.046-17.087-6.50344.937
120II_DT20DT21:DA272DA273_JJ0.323-0.3743.4745.5433.92940.285-0.9960.1853.4375.657-7.97940.831
121II_DT21DC22:DG271DA272_JJ0.068-0.1583.5150.0367.60538.157-1.227-0.0973.42311.494-0.05538.88
123II_DT23DA24:DT269DA270_JJ-0.6020.3353.168-2.3390.14336.830.5110.6433.2010.2273.69836.902
132II_DT32DG33:DC260DA261_JJ0.5390.2572.7590.0019.70936.636-0.669-0.8312.73715.122-0.00237.858
134II_DT34DA35:DT258DA259_JJ-0.345-1.2624.55813.8594.40443.269-2.1592.114.1265.781-18.19245.536
136II_DT36DT37:DA256DA257_JJ-0.882-0.7213.0868.12-17.27233.9710.9652.2912.844-27.076-12.72838.827
137II_DT37DT38:DA255DA256_JJ-0.8160.1422.916-0.965-9.83538.1711.2481.1082.815-14.741.44639.383
138II_DT38DG39:DC254DA255_JJ2.2761.8742.7635.796-6.59135.2883.787-2.9642.709-10.669-9.38336.329
145II_DT45DG46:DC247DA248_JJ-0.3292.5053.282-6.85-0.95638.6693.843-0.333.231-1.4310.24439.259
148II_DT48DC49:DG244DA245_JJ-1.1810.0762.8450.745-5.13333.1940.8592.1492.776-8.917-1.29433.586
152II_DT52DC53:DG240DA241_JJ0.23-0.1493.1649.043-2.08824.5610.2251.8953.055-4.698-20.35226.23
162II_DT62DG63:DC230DA231_JJ0.259-0.4393.1587.0322.36231.693-1.1850.7293.1034.253-12.65932.528
164II_DT64DT65:DA228DA229_JJ0.5830.023.0487.8431.19430.745-0.1730.313.0972.206-14.49131.728
165II_DT65DC66:DG227DA228_JJ1.4530.6353.3996.26915.87939.765-0.875-1.293.57122.149-8.74543.138
170II_DT70DG71:DC222DA223_JJ0.7460.3423.7683.15415.99128.046-2.771-0.6713.51430.004-5.91832.356
174II_DT74DT75:DA218DA219_JJ0.013-0.8033.4694.0211.66733.866-3.0010.5653.0219.253-6.63435.982
175II_DT75DC76:DG217DA218_JJ-0.330.3423.424-1.7975.233.01-0.3150.2593.4499.0723.13533.453
180II_DT80DG81:DC212DA213_JJ-0.4851.3023.3665.3586.23539.791.1471.3253.4329.044-7.77140.596
186II_DT86DG87:DC206DA207_JJ0.8890.5653.463-5.66610.51131.847-0.828-2.493.27918.3689.90233.958
190II_DT90DT91:DA202DA203_JJ0.279-0.1313.289-5.9388.34532.264-1.568-1.4353.06414.56510.36533.81
191II_DT91DT92:DA201DA202_JJ0.306-0.0943.2320.88514.77235.311-1.985-0.3572.96823.138-1.38638.195
192II_DT92DT93:DA200DA201_JJ0.221-0.0783.256-1.5792.46227.056-0.778-0.8633.2185.2423.36227.211
193II_DT93DG94:DC199DA200_JJ0.6160.1863.3975.93718.64124.258-3.540.0872.8937.513-11.94731.072
196II_DT96DG97:DC196DA197_JJ0.0640.2282.9211.002-2.90234.5490.780.032.893-4.875-1.68334.681
1104II_DT104DT105:DA188DA189_JJ0.043-4.1750.68-143.89625.309136.886-2.116-0.1160.36512.84973.055167.703
1105II_DT105DT106:DA187DA188_JJ-1.644-2.84-1.528122.563-97.50170.272-1.7680.421-0.501-51.801-65.116160.92
1106II_DT106DC107:DG186DA187_JJ0.9161.2093.4763.232-13.92643.3912.81-0.8923.028-18.253-4.23745.578
1112II_DT112DA113:DT180DA181_JJ-0.409-0.983.9131.5745.89834.754-2.640.9473.6829.78-2.6135.269
1117II_DT117DT118:DA175DA176_JJ0.026-0.313.385-4.145-3.83441.766-0.021-0.483.382-5.3485.78242.129
1118II_DT118DT119:DA174DA175_JJ-0.037-0.2053.449-3.148-10.63532.1621.465-0.4743.336-18.5235.48333.973
1119II_DT119DT120:DA173DA174_JJ-1.128-0.0852.4485.113-14.0337.4831.0442.0642.177-20.849-7.59840.249
1120II_DT120DG121:DC172DA173_JJ2.191.9482.598-2.575-19.09743.6863.435-2.8531.541-24.3063.27847.556
1123II_DT123DA124:DT169DA170_JJ-0.0420.2544.5330.28732.32430.857-4.0230.0943.37247.448-0.42144.402
1128II_DT128DC129:DG164DA165_JJ-0.89-0.9012.7572.069-0.30831.901-1.591.9292.704-0.559-3.7631.968
1130II_DT130DG131:DC162DA163_JJ0.1630.5853.0291.0478.09932.494-0.252-0.1193.08514.195-1.83533.477
1136II_DT136DG137:DC156DA157_JJ1.1850.7483.3666.06717.59532.213-1.477-0.9483.47128.898-9.96537.079
1140II_DT140DA141:DT152DA153_JJ0.160.0793.2153.3878.44133.426-1.1550.2483.14214.348-5.75834.608
1142II_DT142DT143:DA150DA151_JJ1.520.3732.9711.6085.22837.312-0.058-0.8983.3027.895-17.5339.351
1143II_DT143DG144:DC149DA150_JJ-0.6221.1153.742-9.0728.07634.7550.438-0.5083.93113.03814.64536.754

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.