A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Aug-2019 number of released structures: 10334
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NDB ID: NA1141  PDB ID: 3AZF 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11I_DA1:DT292_J0.02-0.198-0.895-16.65415.0332.844
14I_DA4:DT289_J0.059-0.196-0.687.698-4.8532.755
15I_DA5:DT288_J0.114-0.102-0.2173.297-14.6474.301
17I_DA7:DT286_J0.2750.067-0.0131.267-9.685-5.07
111I_DA11:DT282_J0.036-0.013-0.567-3.911-0.207-12.596
117I_DA17:DT276_J-0.023-0.1560.57411.653-9.703-5.152
119I_DA19:DT274_J0.0360.0080.0462.572-8.1571.248
124I_DA24:DT269_J0.0260.03-0.165-17.771-7.808-1.648
127I_DA27:DT266_J0.1560.020.1325.316-7.6990.231
128I_DA28:DT265_J0.075-0.167-0.27511.184-11.3771.501
129I_DA29:DT264_J0.2350.1070.0477.181-14.667-5.329
130I_DA30:DT263_J0.186-0.0290.0378.114-18.079-1.692
135I_DA35:DT258_J0.055-0.04-0.323-8.5912.724-5.097
141I_DA41:DT252_J0.759-0.1831.83954.79822.49498.333
142I_DA42:DT251_J0.0450.048-0.042-13.35-6.104-0.748
143I_DA43:DT250_J0.128-0.028-0.317-1.652-4.307-3.637
151I_DA51:DT242_J0.098-0.085-0.516-8.556-20.9154.413
154I_DA54:DT239_J-0.229-0.307-1.183-13.118-30.5178.75
155I_DA55:DT238_J-0.094-0.096-0.4398.776-10.2741.166
156I_DA56:DT237_J0.096-0.225-0.02917.121-34.8842.984
157I_DA57:DT236_J0.357-0.0631.03426.597-27.607-14.204
161I_DA61:DT232_J0.114-0.125-0.114-11.228-10.9971.752
167I_DA67:DT226_J0.0590.0090.157-0.896-30.119-5.405
172I_DA72:DT221_J-0.008-0.118-0.08-1.699-5.8137.101
173I_DA73:DT220_J0.121-0.083-0.262-1.503-7.8871.712
177I_DA77:DT216_J0.3010.072-0.078.82-31.038-6.406
182I_DA82:DT211_J-0.01-0.197-0.2970.669-12.765.78
183I_DA83:DT210_J0.096-0.133-0.5693.276-3.7171.691
185I_DA85:DT208_J0.1430.0610.224-2.417-11.2480.119
195I_DA95:DT198_J0.127-0.189-1.127-7.425-2.191-2.17
199I_DA99:DT194_J0.259-0.0250.1092.434-29.124-7.204
1102I_DA102:DT191_J0.022-0.1220.035-10.186-14.63-1.167
1109I_DA109:DT184_J0.0430.001-0.032.352-11.845-6.54
1110I_DA110:DT183_J0.116-0.1380.38911.38-15.0770.323
1111I_DA111:DT182_J0.057-0.1110.5249.349-7.6870.748
1113I_DA113:DT180_J-0.7083.318-1.376-40.8954.936-79.159
1115I_DA115:DT178_J0.0-0.1750.364-13.258-4.454-0.229
1124I_DA124:DT169_J0.679-1.241-2.4194.5111.95-32.26
1126I_DA126:DT167_J-0.040.042-0.304-35.715-20.688-10.429
1127I_DA127:DT166_J0.125-0.190.318-13.801-4.1110.875
1133I_DA133:DT160_J0.1380.045-0.3472.347-16.0333.242
1139I_DA139:DT154_J0.4490.0470.0749.536-5.709-3.137
1141I_DA141:DT152_J0.333-0.2090.2490.286-18.131.991
1145I_DA145:DT148_J0.081-0.501-1.181-6.1547.4154.736
13I_DC3:DG290_J0.138-0.002-0.5574.588-9.1932.211
19I_DC9:DG284_J-0.132-0.106-0.5112.09-16.865-0.36
110I_DC10:DG283_J-0.111-0.19-0.7550.3240.544-2.897
112I_DC12:DG281_J-0.105-0.17-0.7843.784-3.433-3.56
113I_DC13:DG280_J-0.0030.0740.285-15.161-8.282.511
116I_DC16:DG277_J0.063-0.1990.71.507-20.3-4.521
122I_DC22:DG271_J0.0790.0450.179-19.734-9.259-0.358
125I_DC25:DG268_J0.015-0.3651.826-23.7034.6621.275
126I_DC26:DG267_J-0.055-0.1540.8361.103-14.183-4.599
144I_DC44:DG249_J0.069-0.2711.143-5.7582.7142.154
147I_DC47:DG246_J-0.082-0.0610.1683.474-26.369-0.54
149I_DC49:DG244_J-0.124-0.112-0.259-12.13-23.912.483
150I_DC50:DG243_J0.0880.0240.237-12.732-2.954-0.451
153I_DC53:DG240_J0.18-0.074-0.60117.447-21.062.371
160I_DC60:DG233_J0.132-0.03-0.332-0.397-10.113-0.866
166I_DC66:DG227_J-0.052-0.117-0.82115.23-4.27-2.396
169I_DC69:DG224_J-0.060.0440.461-4.732-20.982-2.41
176I_DC76:DG217_J0.02-0.017-0.1965.785-6.5821.026
179I_DC79:DG214_J-0.083-0.1110.442-2.241-28.013-2.524
184I_DC84:DG209_J0.059-0.027-0.3524.985-5.3932.009
188I_DC88:DG205_J0.059-0.0670.2077.97-34.857-3.427
189I_DC89:DG204_J0.066-0.20.858-18.507-0.858-4.667
1101I_DC101:DG192_J0.178-0.0970.4962.931-23.7590.212
1107I_DC107:DG186_J0.0790.007-0.158-2.9691.666-0.986
1108I_DC108:DG185_J-0.0340.0120.14112.167-14.718-4.6
1114I_DC114:DG179_J0.180.1460.153-41.4523.987-0.722
1116I_DC116:DG177_J0.08-0.0170.3370.685-12.843-1.903
1129I_DC129:DG164_J0.011-0.1341.041-6.2-1.874-2.154
1132I_DC132:DG161_J-0.094-0.134-0.497-3.088-21.4733.481
115I_DG15:DC278_J-0.22-0.0550.3480.041-12.316-1.364
118I_DG18:DC275_J-0.1160.0380.85718.059-7.4312.518
131I_DG31:DC262_J-0.116-0.045-0.2160.8989.974-0.812
133I_DG33:DC260_J-0.11-0.111-0.6360.382-5.662.531
139I_DG39:DC254_J-0.0260.041-0.2616.0590.937-0.824
140I_DG40:DC253_J-0.0450.027-0.11418.819-23.645.897
146I_DG46:DC247_J-0.229-0.077-0.596-14.572-16.9654.508
158I_DG58:DC235_J0.054-0.2641.05217.878-19.193-7.381
159I_DG59:DC234_J-0.21-0.065-0.234-6.673-10.7841.518
163I_DG63:DC230_J-0.262-0.143-0.456-9.008-4.8681.931
168I_DG68:DC225_J-0.053-0.1850.3473.36-2.009-2.759
171I_DG71:DC222_J-0.247-0.054-0.2120.327-9.0336.052
178I_DG78:DC215_J-0.239-0.1270.2193.638-1.325-0.564
181I_DG81:DC212_J-0.2110.085-0.163-6.014-5.5982.922
187I_DG87:DC206_J-0.153-0.023-0.3213.3424.9190.17
194I_DG94:DC199_J-0.036-0.167-0.7961.397-9.8550.841
197I_DG97:DC196_J-0.017-0.0460.2210.833-15.755-4.543
198I_DG98:DC195_J-0.159-0.048-0.02610.0922.6080.7
1100I_DG100:DC193_J-0.141-0.105-0.1862.217-2.3791.135
1103I_DG103:DC190_J-0.009-0.0620.043-3.397-10.839-2.564
1121I_DG121:DC172_J-0.090.0190.393-0.024-8.702-2.241
1122I_DG122:DC171_J-0.032-0.0470.22524.205-0.41-7.788
1125I_DG125:DC168_J0.10.064-0.701-19.476-4.770.904
1131I_DG131:DC162_J0.14-0.1340.191-5.465-18.46-4.835
1134I_DG134:DC159_J-0.225-0.256-0.821-1.215-11.995.333
1135I_DG135:DC158_J0.071-0.253-0.636-15.795-8.184-2.272
1137I_DG137:DC156_J-0.0390.014-0.5850.026-11.9645.19
1138I_DG138:DC155_J-0.222-0.062-0.379-4.976-8.6031.45
1144I_DG144:DC149_J-0.196-0.126-0.3287.428-3.4012.718
12I_DT2:DA291_J0.03-0.133-0.244-1.097-2.6753.814
16I_DT6:DA287_J0.003-0.038-0.1367.076-2.692.745
18I_DT8:DA285_J0.089-0.111-0.2494.485-11.2523.294
114I_DT14:DA279_J0.051-0.138-0.04-2.236-15.643-2.21
120I_DT20:DA273_J0.004-0.129-0.8095.579-21.1322.635
121I_DT21:DA272_J0.048-0.17-0.693-3.39-19.7393.383
123I_DT23:DA270_J0.096-0.187-0.173-12.061-18.7132.688
132I_DT32:DA261_J0.035-0.257-1.21720.871-9.1452.756
134I_DT34:DA259_J-0.186-0.027-0.015-2.753-14.1520.61
136I_DT36:DA257_J-0.051-0.1630.534-11.652-8.4491.418
137I_DT37:DA256_J-0.282-0.040.679-18.131-10.569-4.993
138I_DT38:DA255_J-0.3150.054-0.041-5.316-20.905-8.483
145I_DT45:DA248_J-0.186-0.1260.578-6.149-20.792-3.168
148I_DT48:DA245_J-0.117-0.07-0.616-1.805-27.528-4.916
152I_DT52:DA241_J0.016-0.266-0.669-1.445-6.9392.592
162I_DT62:DA231_J-0.028-0.14-0.006-4.75-10.068-4.611
164I_DT64:DA229_J-0.049-0.098-0.1323.963-15.031-0.009
165I_DT65:DA228_J-0.062-0.087-0.57410.416-8.9192.956
170I_DT70:DA223_J-0.186-0.027-0.155-3.2683.107-2.973
174I_DT74:DA219_J-0.055-0.038-0.4570.755-14.622-0.289
175I_DT75:DA218_J-0.181-0.132-0.276-7.397-11.3513.414
180I_DT80:DA213_J-0.0980.018-0.264-8.996-1.301-2.829
186I_DT86:DA207_J-0.168-0.068-0.1813.655-6.2252.985
190I_DT90:DA203_J-0.263-0.0070.323-11.688-26.58-8.1
191I_DT91:DA202_J0.014-0.115-0.4490.391-16.8335.405
192I_DT92:DA201_J0.035-0.081-0.1483.295-1.342.388
193I_DT93:DA200_J0.146-0.27-0.3882.019-3.4386.58
196I_DT96:DA197_J-0.002-0.1480.235.682-1.2046.872
1104I_DT104:DA189_J0.0-0.011-0.2961.591-1.368-3.7
1105I_DT105:DA188_J0.009-0.0770.339-8.737-6.636-2.238
1106I_DT106:DA187_J-0.101-0.082-0.176-1.45-24.843-6.049
1112I_DT112:DA181_J-0.112-0.0490.02412.95-10.274-3.175
1117I_DT117:DA176_J-0.135-0.0290.714-11.487-11.214-0.452
1118I_DT118:DA175_J-0.036-0.1130.794-6.665-9.142-7.964
1119I_DT119:DA174_J-0.201-0.1310.812-10.777-11.284-1.957
1120I_DT120:DA173_J0.035-0.041-0.0595.98-11.2080.078
1123I_DT123:DA170_J-0.1540.232-0.70429.3124.089-16.91
1128I_DT128:DA165_J-0.2-0.1520.829-6.556-16.8171.66
1130I_DT130:DA163_J-0.356-0.1110.546-13.749-21.115-9.322
1136I_DT136:DA157_J0.225-0.087-0.8323.425-21.629-2.886
1140I_DT140:DA153_J-0.346-0.1770.1310.214-5.9-0.84
1142I_DT142:DA151_J-0.064-0.104-0.328-6.27-6.866-3.401
1143I_DT143:DA150_J-0.122-0.146-0.5464.475-5.0690.894

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.