A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: NA1142  PDB ID: 3AZG 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11I_DA1:DT292_J0.105-0.11-0.896-21.38419.89-1.503
14I_DA4:DT289_J0.083-0.1-0.5055.115-17.4137.561
15I_DA5:DT288_J0.118-0.079-0.176-1.548-11.381.561
17I_DA7:DT286_J0.1570.02-0.205-2.567-10.4581.074
111I_DA11:DT282_J0.049-0.022-0.1914.3441.552-8.661
117I_DA17:DT276_J-0.05-0.1340.4344.341-8.5370.003
119I_DA19:DT274_J0.032-0.001-0.166-2.379-16.4082.752
124I_DA24:DT269_J0.011-0.015-0.209-6.282-18.501-7.227
127I_DA27:DT266_J0.053-0.009-0.1695.296-12.7740.565
128I_DA28:DT265_J0.061-0.202-0.2555.147-3.839-0.047
129I_DA29:DT264_J0.1140.110.1244.417-9.997-2.256
130I_DA30:DT263_J0.056-0.125-0.89-5.253-16.6187.476
135I_DA35:DT258_J0.01-0.04-0.476-21.0790.845-0.086
141I_DA41:DT252_J0.1220.0240.31712.78-9.272-5.529
142I_DA42:DT251_J-0.031-0.0780.2570.838-8.1075.274
143I_DA43:DT250_J0.103-0.026-0.441-3.613-3.072-4.224
151I_DA51:DT242_J0.086-0.027-0.37-3.775-22.5050.492
154I_DA54:DT239_J-0.109-0.21-0.827-4.951-16.477.074
155I_DA55:DT238_J-0.049-0.028-0.1111.532-21.142-4.774
156I_DA56:DT237_J0.1120.0380.42317.568-24.55-10.513
157I_DA57:DT236_J0.216-0.0610.55214.75-25.937-4.679
161I_DA61:DT232_J0.10.004-0.335-19.897-12.8350.876
167I_DA67:DT226_J0.0640.0420.096-2.017-32.415-6.07
172I_DA72:DT221_J-0.080.0150.1180.883-5.8331.746
173I_DA73:DT220_J0.076-0.1410.086-2.044-2.5244.421
177I_DA77:DT216_J0.2590.136-0.1813.415-30.671-4.962
182I_DA82:DT211_J0.0310.03-0.1271.349-10.649-0.489
183I_DA83:DT210_J0.044-0.028-0.6-3.825-10.542-1.082
185I_DA85:DT208_J0.1650.0750.078-3.107-13.625-2.222
195I_DA95:DT198_J0.036-0.05-0.756-8.017-0.035-6.173
199I_DA99:DT194_J0.203-0.0340.074-0.791-26.087-6.035
1102I_DA102:DT191_J-0.147-0.106-0.264-3.886-10.8511.813
1109I_DA109:DT184_J-0.029-0.1260.1112.804-12.329-1.459
1110I_DA110:DT183_J0.088-0.105-0.0641.103-10.5591.906
1111I_DA111:DT182_J0.174-0.0630.145.894-3.238-3.321
1113I_DA113:DT180_J0.088-0.092-0.796-6.902-18.3060.747
1115I_DA115:DT178_J0.015-0.110.2214.908-6.596-5.086
1124I_DA124:DT169_J0.297-0.343-1.5513.9773.306-18.31
1126I_DA126:DT167_J0.041-0.329-1.128-17.367-23.26512.062
1127I_DA127:DT166_J0.191-0.0620.192-20.321.197-2.712
1132I_DA133:DT160_J0.0870.061-0.0316.017-14.45-1.446
1138I_DA139:DT154_J0.443-0.016-0.0117.782-3.726-3.483
1140I_DA141:DT152_J0.354-0.1550.3853.992-17.696-0.18
1144I_DA145:DT148_J0.263-0.342-1.066-1.9945.897-3.581
13I_DC3:DG290_J0.1090.018-0.6328.921-13.4611.036
19I_DC9:DG284_J0.02-0.035-0.539-3.958-12.743.999
110I_DC10:DG283_J-0.037-0.122-0.6331.2537.725-4.107
112I_DC12:DG281_J-0.066-0.041-0.4585.9-10.075-3.921
113I_DC13:DG280_J-0.007-0.010.096-9.029-10.724-0.685
116I_DC16:DG277_J0.186-0.3581.018-2.376-11.595-6.247
122I_DC22:DG271_J0.0640.0170.238-18.836-14.4920.491
125I_DC25:DG268_J0.0560.0290.457-11.768-7.2541.112
126I_DC26:DG267_J-0.143-0.0470.6620.6-13.211-4.004
144I_DC44:DG249_J0.026-0.0470.4944.32-6.911-2.921
147I_DC47:DG246_J0.105-0.001-0.014.94-21.5293.385
149I_DC49:DG244_J0.166-0.019-0.5850.012-16.4474.378
150I_DC50:DG243_J0.0490.0080.0081.622-7.429-1.088
153I_DC53:DG240_J0.174-0.178-0.8477.832-20.7516.987
160I_DC60:DG233_J0.05-0.028-0.369-4.166-7.9850.705
166I_DC66:DG227_J0.046-0.016-0.59114.777-4.876-0.785
169I_DC69:DG224_J-0.054-0.0830.575-4.049-18.973-5.328
176I_DC76:DG217_J0.136-0.023-0.0420.644-9.7551.918
179I_DC79:DG214_J0.053-0.0820.306-3.557-25.353-0.766
184I_DC84:DG209_J0.108-0.207-0.7633.843-6.5043.974
188I_DC88:DG205_J0.064-0.0320.4945.115-30.267-4.205
189I_DC89:DG204_J0.051-0.1040.873-15.593.539-2.886
1101I_DC101:DG192_J0.155-0.0390.4947.182-18.398-1.989
1107I_DC107:DG186_J0.14-0.0180.102-3.6313.7411.143
1108I_DC108:DG185_J0.048-0.321.0378.84-19.053-10.412
1114I_DC114:DG179_J0.254-0.436-1.38215.408-21.1958.849
1116I_DC116:DG177_J0.125-0.025-0.85815.757-12.6690.337
1131I_DC132:DG161_J-0.088-0.075-0.4632.101-24.5952.601
115I_DG15:DC278_J-0.141-0.0120.3361.139-8.736-1.069
118I_DG18:DC275_J-0.001-0.0140.66611.007-8.815-0.474
131I_DG31:DC262_J-0.2090.007-0.592-19.472-7.65-0.442
133I_DG33:DC260_J-0.074-0.054-0.4860.628-13.4532.201
139I_DG39:DC254_J-0.059-0.012-0.58-11.068.658-2.965
140I_DG40:DC253_J-0.048-0.0220.161.528-15.113-1.472
146I_DG46:DC247_J-0.365-0.057-0.271-4.769-13.4254.716
158I_DG58:DC235_J-0.23-0.185-0.023-11.742-18.799-3.264
159I_DG59:DC234_J-0.180.074-0.271-6.2361.0880.787
163I_DG63:DC230_J-0.167-0.058-0.309-7.835-6.4243.377
168I_DG68:DC225_J-0.25-0.124-0.314-4.656-0.072-0.161
171I_DG71:DC222_J-0.262-0.033-0.189-6.434-11.1133.202
178I_DG78:DC215_J0.0030.0220.0197.2381.129-1.365
181I_DG81:DC212_J-0.244-0.02-0.2161.527-1.6383.729
187I_DG87:DC206_J-0.251-0.094-0.297-1.4492.0541.635
194I_DG94:DC199_J0.17-0.222-0.973-8.73-8.987-3.203
197I_DG97:DC196_J-0.0250.0750.2127.064-12.671-2.356
198I_DG98:DC195_J-0.082-0.0620.2899.4923.2972.543
1100I_DG100:DC193_J-0.011-0.143-0.586-2.819-2.372-1.547
1103I_DG103:DC190_J0.03-0.054-0.185-6.545-3.355-3.895
1121I_DG121:DC172_J-0.302-0.2210.6330.222-8.042-2.079
1122I_DG122:DC171_J-0.026-0.0270.40820.048-3.184-8.086
1125I_DG125:DC168_J0.036-0.131-1.231-20.15-3.533-0.996
1130I_DG131:DC162_J0.034-0.07-0.2281.986-8.484-0.718
1133I_DG134:DC159_J-0.146-0.186-0.7530.932-10.7382.143
1134I_DG135:DC158_J0.14-0.255-0.769-12.938-12.188-1.924
1136I_DG137:DC156_J-0.0920.007-0.566-1.589-12.0944.018
1137I_DG138:DC155_J-0.212-0.066-0.374-2.187-8.6262.15
1143I_DG144:DC149_J-0.066-0.124-0.1598.632-4.6910.801
12I_DT2:DA291_J-0.023-0.013-0.064-2.456-0.279-0.366
16I_DT6:DA287_J0.147-0.196-0.30610.071-4.2382.88
18I_DT8:DA285_J0.161-0.149-0.0130.835-14.123-3.678
114I_DT14:DA279_J0.021-0.047-0.137-4.426-14.302-1.026
120I_DT20:DA273_J0.102-0.072-0.2581.038-21.664-0.14
121I_DT21:DA272_J0.007-0.063-0.6493.797-22.037-1.562
123I_DT23:DA270_J-0.054-0.039-0.068-10.462-20.386-1.42
132I_DT32:DA261_J-0.083-0.2-1.216.215-4.2021.268
134I_DT34:DA259_J-0.095-0.145-0.171-5.382-15.934.86
136I_DT36:DA257_J-0.191-0.110.784-19.593-5.968-2.542
137I_DT37:DA256_J-0.2530.0230.554-13.942-11.214-2.308
138I_DT38:DA255_J-0.310.007-0.013-9.563-27.486-9.019
145I_DT45:DA248_J-0.162-0.2580.836-1.578-19.4410.218
148I_DT48:DA245_J-0.015-0.021-0.4180.174-15.304-0.621
152I_DT52:DA241_J0.059-0.14-0.5647.17-11.922-0.553
162I_DT62:DA231_J-0.06-0.141-0.111-6.435-13.81-1.239
164I_DT64:DA229_J-0.051-0.013-0.007-0.789-14.1520.105
165I_DT65:DA228_J-0.0830.017-0.1787.819-10.355-1.487
170I_DT70:DA223_J-0.1990.061-0.117-6.605-15.942-1.962
174I_DT74:DA219_J-0.096-0.039-0.234-1.418-10.0630.284
175I_DT75:DA218_J0.062-0.045-0.282-0.245-13.2484.674
180I_DT80:DA213_J-0.0540.028-0.027-12.259-7.417-1.763
186I_DT86:DA207_J-0.1510.018-0.2693.844-9.6650.659
190I_DT90:DA203_J-0.2260.0410.357-11.592-17.889-5.032
191I_DT91:DA202_J0.073-0.082-0.5863.202-15.5414.68
192I_DT92:DA201_J-0.068-0.018-0.4830.863-8.9220.096
193I_DT93:DA200_J0.123-0.241-0.6711.126-9.6281.732
196I_DT96:DA197_J-0.007-0.009-0.46413.804-6.7380.247
1104I_DT104:DA189_J-0.026-0.04-0.4570.9320.434-5.268
1105I_DT105:DA188_J0.016-0.0570.195-9.952-6.097-0.257
1106I_DT106:DA187_J-0.007-0.059-0.3273.848-22.784-2.657
1112I_DT112:DA181_J-0.068-0.042-0.2724.505-6.532-1.172
1117I_DT117:DA176_J-0.1150.048-0.1590.818-18.777-0.399
1118I_DT118:DA175_J-0.065-0.0190.503-2.679-1.999-5.436
1119I_DT119:DA174_J-0.1360.0090.473-4.206-4.112-4.825
1120I_DT120:DA173_J-0.046-0.0220.3319.305-16.823-9.472
1123I_DT123:DA170_J-0.1940.156-1.18633.557-0.523-17.176
1128I_DT128:DG164_J0.873-0.044-0.383-25.67113.72-38.607
1129I_DT130:DA163_J-0.213-0.058-0.171-12.76-5.107-6.623
1135I_DT136:DA157_J0.289-0.18-0.8828.15-18.4513.039
1139I_DT140:DA153_J-0.367-0.2510.39-2.958-4.5242.037
1141I_DT142:DA151_J-0.006-0.194-0.436-2.074-7.184-1.052
1142I_DT143:DA150_J-0.186-0.14-0.6358.156-5.087-1.732

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.