A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: NA1142  PDB ID: 3AZG 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11II_DA1DT2:DA291DT292_JJ-1.137-0.5123.018-4.349-5.16629.00.0431.3393.192-10.1448.53829.76
14II_DA4DA5:DT288DT289_JJ-0.4360.2963.381-6.236.00136.979-0.352-0.1673.4129.3059.66137.943
15II_DA5DT6:DA287DT288_JJ0.602-0.5312.9982.962-1.11931.502-0.782-0.5963.057-2.055-5.43931.657
17II_DA7DT8:DA285DT286_JJ-0.129-0.8293.137-1.3640.05234.586-1.4010.0153.1380.0882.29234.612
111II_DA11DC12:DG281DT282_JJ0.121-0.5443.377-1.7673.79830.219-1.806-0.5893.2747.243.36830.501
117II_DA17DG18:DC275DT276_JJ0.705-0.2243.103-2.1314.16531.43-1.124-1.6542.9967.6353.90731.768
119II_DA19DT20:DA273DT274_JJ-0.126-0.5753.056-0.064-0.91739.433-0.750.183.068-1.360.09439.443
124II_DA24DC25:DG268DT269_JJ0.410.563.419-1.134.60237.8740.244-0.7773.4487.0561.73238.159
127II_DA27DA28:DT265DT266_JJ0.0530.0343.262-3.36511.40429.04-2.091-0.7343.03521.6346.38331.331
128II_DA28DA29:DT264DT265_JJ-0.7060.2453.425-7.502-13.87542.8481.6090.2143.273-18.279.87745.53
129II_DA29DA30:DT263DT264_JJ0.109-0.4633.6066.5272.62435.513-1.1520.8373.5284.251-10.57236.181
130II_DA30DG31:DC262DT263_JJ-0.254-0.1653.608-6.12814.16335.893-2.143-0.4393.31421.7849.42538.969
135II_DA35DT36:DA257DT258_JJ-0.15-1.0213.317-6.554-4.15535.955-1.032-0.6883.385-6.63610.46636.756
141II_DA41DA42:DT251DT252_JJ-0.1850.4593.7950.37216.01229.163-2.4270.3993.5629.189-0.67933.188
142II_DA42DA43:DT250DT251_JJ-0.276-0.7833.5985.922.79932.73-1.8681.5453.424.905-10.37733.361
143II_DA43DC44:DG249DT250_JJ0.841-0.763.223-5.40210.61830.365-3.073-2.3742.63219.3619.8532.567
151II_DA51DT52:DA241DT242_JJ0.091-0.0962.98-1.4366.42229.758-1.346-0.4332.88912.3162.75430.461
154II_DA54DA55:DT238DT239_JJ-0.2290.5393.011-6.8856.59826.464-0.363-1.0673.01813.85314.45528.101
155II_DA55DA56:DT237DT238_JJ-0.2750.2152.9180.6570.53636.4780.2770.5212.9160.856-1.0536.487
156II_DA56DA57:DT236DT237_JJ0.6790.3363.3843.126-5.15942.1321.004-0.6083.362-7.132-4.32142.542
157II_DA57DG58:DC235DT236_JJ1.0311.7824.1378.46-11.2138.2594.091-0.333.636-16.444-12.40940.665
161II_DA61DT62:DA231DT232_JJ-0.126-0.5372.956-2.4261.92333.981-1.19-0.1322.9243.2824.14134.118
167II_DA67DG68:DC225DT226_JJ1.1471.2323.490.554-5.16835.1442.807-1.7963.299-8.501-0.91135.514
172II_DA72DA73:DT220DT221_JJ-0.017-0.7983.36-0.6386.02632.224-2.458-0.0813.16310.7381.13832.774
173II_DA73DT74:DA219DT220_JJ-0.002-0.4553.3383.3666.30327.987-2.3250.7583.14112.772-6.8228.867
177II_DA77DG78:DC215DT216_JJ1.3940.8543.0790.637-2.05534.2271.751-2.273.049-3.488-1.08234.292
182II_DA82DA83:DT210DT211_JJ0.190.0323.4130.99610.33633.153-1.607-0.1583.2817.586-1.69434.698
183II_DA83DC84:DG209DT210_JJ0.108-0.2413.1153.135.00531.724-1.2780.3333.0399.058-5.66432.255
185II_DA85DT86:DA207DT208_JJ0.188-0.7033.173.3974.63330.517-2.1660.2743.0368.706-6.38331.04
195II_DA95DT96:DA197DT198_JJ-0.205-0.6682.890.3032.36228.565-1.8150.4742.8244.777-0.61228.662
199II_DA99DG100:DC193DT194_JJ1.4860.4343.4178.068-4.8936.9641.336-1.1683.568-7.562-12.47838.109
1102II_DA102DG103:DC190DT191_JJ-0.73-0.4283.45-5.0836.76133.102-1.8640.393.37211.6328.74534.136
1109II_DA109DA110:DT183DT184_JJ0.1730.0673.3121.2276.79332.67-1.03-0.0943.26411.911-2.15233.372
1110II_DA110DA111:DT182DT183_JJ-0.366-0.352.933-4.252-1.97738.954-0.3070.0862.968-2.9516.34839.224
1111II_DA111DT112:DA181DT182_JJ-0.247-0.5053.380.796-2.61633.858-0.430.5553.402-4.483-1.36333.965
1113II_DA113DC114:DG179DT180_JJ0.3260.0382.7026.4594.16430.535-0.5830.412.6947.753-12.02531.465
1115II_DA115DC116:DG177DT178_JJ0.328-0.9023.1148.2481.53435.78-1.6330.563.0722.455-13.20236.719
1124II_DA124DG125:DC168DT169_JJ0.91-1.3214.256-4.67211.47632.585-4.341-2.3893.4519.5927.97734.801
1126II_DA126DA127:DT166DT167_JJ-0.886-0.4023.084-12.5146.07438.117-1.246-0.0923.1158.94518.4340.487
1127II_DA127DT128:DG164DT166_JJ-0.727-1.5155.596-14.023-12.34450.467-0.283-0.785.794-13.94115.83853.601
1132II_DA133DG134:DC159DT160_JJ0.035-0.5823.4242.8211.95431.258-3.0090.4112.99921.188-4.99833.528
1138II_DA139DT140:DA153DT154_JJ0.137-1.5113.656-4.668-9.21336.798-0.947-0.93.865-14.2527.22238.171
1140II_DA141DT142:DA151DT152_JJ0.498-0.383.3937.728-0.89535.527-0.4780.343.431-1.445-12.4836.342
13II_DC3DA4:DT289DG290_JJ-0.391.2463.4841.0149.50235.810.5410.7653.67215.124-1.61437.022
19II_DC9DC10:DG283DG284_JJ0.0010.4253.406-2.847.17333.353-0.473-0.4753.4112.2934.86734.209
110II_DC10DA11:DT282DG283_JJ-0.562-0.5343.235-2.71710.42831.745-2.5990.5392.95418.4124.79833.48
112II_DC12DC13:DG280DG281_JJ0.152-0.83.721-0.53917.14534.536-3.538-0.3053.00726.9220.84638.445
113II_DC13DT14:DA279DG280_JJ-0.6940.4183.1954.06314.63626.388-2.1392.142.8929.189-8.10330.38
116II_DC16DA17:DT276DG277_JJ0.7642.853.199.42-20.81449.4634.204-0.3522.029-23.486-10.62954.182
122II_DC22DT23:DA270DG271_JJ-0.4550.3023.1422.4339.6724.899-1.7841.5942.9921.367-5.37526.792
125II_DC25DC26:DG267DG268_JJ-0.2150.0043.053-4.5752.74433.297-0.411-0.3273.0454.7517.92133.71
126II_DC26DA27:DT266DG267_JJ0.162.6673.436.524-23.15350.2524.0880.1712.11-25.648-7.22755.373
144II_DC44DT45:DA248DG249_JJ-0.31-0.4543.531-0.0534.71135.191-1.4830.53.4437.7480.08835.495
147II_DC47DT48:DA245DG246_JJ0.6651.4083.2995.3255.0836.1331.502-0.2913.5188.088-8.47736.851
149II_DC49DC50:DG243DG244_JJ-0.3860.4663.354-4.3684.70533.9170.025-0.0553.4087.9777.40534.501
150II_DC50DA51:DT242DG243_JJ-0.22-0.1363.4472.52113.22831.615-2.4060.7883.11823.016-4.38634.296
153II_DC53DA54:DT239DG240_JJ-0.4020.3113.675-0.21726.21123.503-4.1470.6292.71648.8190.40535.067
160II_DC60DA61:DT232DG233_JJ-0.4470.363.768-3.89912.40235.987-1.2970.1023.71519.3156.07338.191
166II_DC66DA67:DT226DG227_JJ-1.141.5153.776-4.381-1.23343.3952.1771.0453.826-1.6625.90543.622
169II_DC69DT70:DA223DG224_JJ0.020.8863.3995.747-5.33535.9512.1470.7683.205-8.518-9.17636.769
176II_DC76DA77:DT216DG217_JJ-0.692.0373.4091.535-6.27445.1223.181.0263.09-8.127-1.98845.559
179II_DC79DT80:DA213DG214_JJ1.171.4933.5924.315-3.86742.1872.485-1.1353.545-5.342-5.9642.565
184II_DC84DA85:DT208DG209_JJ-0.4570.4383.656-6.18710.22634.022-0.966-0.2743.65816.84410.19236.002
188II_DC88DC89:DG204DG205_JJ0.9681.2784.038-2.284-5.63740.4422.572-1.6863.777-8.0993.28140.878
189II_DC89DT90:DA203DG204_JJ-0.8821.1163.3230.335-9.1138.7572.6751.3342.989-13.501-0.49739.775
1101II_DC101DA102:DT191DG192_JJ1.0940.6153.51310.730.3339.3180.843-0.2423.680.48-15.59640.702
1107II_DC107DC108:DG185DG186_JJ-1.481.423.369-7.588-4.98731.9463.3661.2543.369-8.8413.45133.179
1108II_DC108DA109:DT184DG185_JJ0.7451.6063.5813.393-16.21443.1913.3410.2032.932-20.633-17.04347.818
1114II_DC114DA115:DT178DG179_JJ-0.3740.553.573-12.98916.06130.016-1.735-1.5183.33827.3222.09436.302
1116II_DC116DT117:DA176DG177_JJ0.051-0.1553.7341.2824.65936.79-0.9540.1163.6877.343-2.02137.096
1131II_DC132DA133:DT160DG161_JJ0.5241.0963.308-6.18314.14730.823-0.516-1.9223.32224.76310.82434.389
115II_DG15DC16:DG277DC278_JJ-0.6610.3753.646-4.0585.10233.086-0.2950.3913.7148.8537.04133.705
118II_DG18DA19:DT274DC275_JJ-0.353-0.2343.7043.482-1.63638.486-0.1261.0173.666-2.475-5.26638.671
131II_DG31DT32:DA261DC262_JJ-0.1970.32.645.504-2.2527.7621.0261.4152.523-4.622-11.30728.379
133II_DG33DT34:DA259DC260_JJ0.115-0.7693.36-1.0666.02931.049-2.531-0.4093.15311.1271.96831.632
139II_DG39DG40:DC253DC254_JJ-0.7060.6363.107-7.3158.46933.301-0.2130.0773.24614.28512.33835.08
140II_DG40DA41:DT252DC253_JJ-0.503-0.1032.8610.8976.31739.657-0.7770.8222.8029.238-1.31240.146
146II_DG46DC47:DG246DC247_JJ-0.8380.3223.065-2.9780.55438.1180.4250.9243.1240.8464.55138.234
158II_DG58DG59:DC234DC235_JJ0.6920.8543.2893.005-4.24838.6021.796-0.6743.223-6.391-4.5238.938
159II_DG59DC60:DG233DC234_JJ-0.0770.293.2510.7045.17436.009-0.2560.2223.2588.315-1.13136.373
163II_DG63DT64:DA229DC230_JJ-0.756-0.6913.143-2.6567.36431.986-2.4110.9052.96613.1194.73232.906
168II_DG68DC69:DG224DC225_JJ-1.0920.9093.421-7.959-4.12340.4031.7580.6383.461-5.88211.35541.345
171II_DG71DA72:DT221DC222_JJ-0.4820.0043.099-5.4745.5932.092-0.904-0.0443.0949.9289.72333.007
178II_DG78DC79:DG214DC215_JJ-1.1351.2883.671-2.391-5.15339.052.5821.3693.54-7.6593.55539.445
181II_DG81DA82:DT211DC212_JJ-0.6340.1173.428-0.6339.38132.48-1.4030.9833.34316.3491.10233.778
187II_DG87DC88:DG205DC206_JJ-1.4040.7353.389-4.725-15.63843.4842.2981.3743.092-20.2766.12746.311
194II_DG94DA95:DT198DC199_JJ-0.073-0.0033.221-3.60510.425.943-2.415-0.6842.98221.957.60928.144
197II_DG97DG98:DC195DC196_JJ1.10.313.1421.3092.74434.260.11-1.6633.1964.647-2.21634.39
198II_DG98DA99:DT194DC195_JJ-1.6550.9693.771-2.332-8.28642.2862.2481.993.61-11.3453.19243.114
1100II_DG100DC101:DG192DC193_JJ-0.7390.4313.056-11.467-1.18637.0310.79-0.2463.125-1.81417.5438.723
1103II_DG103DT104:DA189DC190_JJ-0.648-0.1583.1893.76.61527.395-1.7772.1352.95913.639-7.62928.405
1121II_DG121DG122:DC171DC172_JJ-0.4940.3643.01-3.146-2.27536.2620.8730.3873.013-3.6425.03736.462
1122II_DG122DT123:DA170DC171_JJ0.134-0.5213.4628.804-9.07328.4690.9241.593.362-17.405-16.88831.097
1125II_DG125DA126:DT167DC168_JJ-0.2450.5743.5592.611-7.03541.4381.5790.6313.4-9.844-3.65442.083
1130II_DG131DC132:DG161DC162_JJ-0.3611.6613.0812.314-6.90344.8742.7010.6522.788-8.973-3.00845.431
1133II_DG134DG135:DC158DC159_JJ-0.581-0.3613.682-1.78314.8931.409-3.140.673.21825.7483.08334.724
1134II_DG135DT136:DA157DC158_JJ0.4071.4082.2966.791-0.32431.8982.5490.1172.317-0.582-12.18432.596
1136II_DG137DG138:DC155DC156_JJ-0.182-0.0983.182-4.5063.33634.476-0.656-0.3623.1565.5837.5434.915
1137II_DG138DA139:DT154DC155_JJ-0.619-0.1633.049-2.9881.53235.705-0.4720.6033.082.4924.8635.858
1143II_DG144DA145:DT148DC149_JJ0.295-0.5563.7598.1337.39136.991-1.890.7063.57111.346-12.48438.534
12II_DT2DC3:DG290DA291_JJ0.8860.2733.129.942-0.39734.3010.503-0.0163.24-0.656-16.43335.673
16II_DT6DA7:DT286DA287_JJ-0.389-0.4633.6030.115-0.79733.666-0.6570.6933.611-1.375-0.19933.676
18II_DT8DC9:DG284DA285_JJ0.408-0.1123.3016.624-3.62839.7560.2540.1693.321-5.277-9.63640.439
114II_DT14DG15:DC278DA279_JJ0.3392.7083.205-1.369-13.67344.2924.45-0.5322.306-17.6371.76646.272
120II_DT20DT21:DA272DA273_JJ-0.0490.0663.072.941-3.30532.6590.6440.5563.033-5.844-5.232.949
121II_DT21DC22:DG271DA272_JJ0.414-0.7463.74-3.0168.65142.27-1.961-0.8933.49211.834.12443.207
123II_DT23DA24:DT269DA270_JJ-0.160.6113.462-0.2683.70139.6430.440.2013.5035.4420.39439.809
132II_DT32DG33:DC260DA261_JJ0.4180.1143.776-3.29722.13532.669-2.9-1.0763.17634.7375.17439.426
134II_DT34DA35:DT258DA259_JJ-0.3740.3733.71-1.8282.67138.6930.190.3093.7394.0222.75338.823
136II_DT36DT37:DA256DA257_JJ-0.27-0.2743.0690.513-4.59933.9970.2160.5343.074-7.82-0.87134.301
137II_DT37DT38:DA255DA256_JJ-0.9160.3873.1371.004-9.81840.6711.5141.3832.948-13.88-1.4241.802
138II_DT38DG39:DC254DA255_JJ1.7821.6613.3913.668-8.50834.2943.978-2.3833.073-14.111-6.08435.487
145II_DT45DG46:DC247DA248_JJ0.9951.9893.26511.036-3.96240.2163.206-0.2243.216-5.618-15.65341.822
148II_DT48DC49:DG244DA245_JJ-0.5160.663.128-3.6770.07639.4760.9650.3463.1630.1125.4339.64
152II_DT52DC53:DG240DA241_JJ0.6810.8973.4274.219.11125.413-0.626-0.2753.59319.755-9.12927.292
162II_DT62DG63:DC230DA231_JJ0.161.0053.5470.1919.24631.8020.002-0.2453.68816.444-0.33933.086
164II_DT64DT65:DA228DA229_JJ0.2070.0363.0361.3393.84830.937-0.614-0.1493.0247.175-2.49731.198
165II_DT65DC66:DG227DA228_JJ0.940.5083.1636.0128.26435.153-0.341-0.6623.30613.339-9.70336.564
170II_DT70DG71:DC222DA223_JJ0.7311.0923.441-1.2966.21837.4670.825-1.33.5449.5951.99937.982
174II_DT74DT75:DA218DA219_JJ0.169-0.1993.1733.6728.90934.07-1.5970.2463.02914.84-6.11635.367
175II_DT75DC76:DG217DA218_JJ-0.0850.1053.332-1.6729.65130.529-1.596-0.1543.21517.7633.07732.026
180II_DT80DG81:DC212DA213_JJ-0.4790.9332.976-3.0595.10435.270.8310.3673.1068.355.00435.753
186II_DT86DG87:DC206DA207_JJ0.9680.8113.5762.3556.38332.2170.202-1.2553.72311.345-4.18532.909
190II_DT90DT91:DA202DA203_JJ0.3510.0662.9196.431-0.36235.5130.1530.2552.935-0.587-10.43836.074
191II_DT91DT92:DA201DA202_JJ0.20.4223.431-0.24310.85930.735-1.281-0.4023.3819.730.44232.554
192II_DT92DT93:DA200DA201_JJ0.093-0.1763.4462.2815.78126.739-3.4980.2852.89630.882-4.46231.058
193II_DT93DG94:DC199DA200_JJ0.529-0.2573.7962.80518.62530.448-3.536-0.3943.16331.919-4.80735.685
196II_DT96DG97:DC196DA197_JJ-0.0210.5413.568-1.6824.47237.3590.199-0.2083.6046.9472.61237.653
1104II_DT104DT105:DA188DA189_JJ0.274-1.0393.595-0.48912.96731.847-3.877-0.5442.95622.4990.84834.325
1105II_DT105DT106:DA187DA188_JJ0.2560.02.9286.7713.22636.164-0.3940.4222.9165.128-10.76536.908
1106II_DT106DC107:DG186DA187_JJ1.5840.7193.5733.5546.18739.2120.246-1.863.7639.127-5.24339.831
1112II_DT112DA113:DT180DA181_JJ-0.339-0.3343.6821.41512.78933.108-2.630.7873.31521.46-2.37435.455
1117II_DT117DT118:DA175DA176_JJ0.226-0.1523.623-4.689-3.42737.8240.245-0.9973.571-5.2487.18138.251
1118II_DT118DT119:DA174DA175_JJ-0.072-0.4043.269-0.233-6.1336.650.1920.0823.292-9.6640.36737.142
1119II_DT119DT120:DA173DA174_JJ0.1570.7943.1973.725-19.7944.9362.3610.0752.652-24.49-4.6149.028
1120II_DT120DG121:DC172DA173_JJ0.6541.1363.4610.9222.50536.5171.439-0.9053.5443.991-1.46936.611
1123II_DT123DA124:DT169DA170_JJ-0.4710.1454.5162.21329.46835.648-3.4260.8743.60640.637-3.05245.995
1128II_DT128DT130:DA163DG164_JJ-1.7122.2964.53414.156-32.50964.993.2242.0022.888-28.199-12.27973.091
1129II_DT130DG131:DC162DA163_JJ0.7690.3722.8252.18516.72627.057-2.106-1.042.65632.096-4.19331.801
1135II_DT136DG137:DC156DA157_JJ0.225-0.2053.989-3.73519.98328.181-4.06-1.0733.12335.756.68234.628
1139II_DT140DA141:DT152DA153_JJ-0.4410.4553.0571.589-1.57636.6470.9230.9023.015-2.504-2.52436.713
1141II_DT142DT143:DA150DA151_JJ0.336-0.2813.0653.0448.98227.019-2.465-0.0382.84718.514-6.27428.605
1142II_DT143DG144:DC149DA150_JJ0.1570.5133.422-6.2522.80335.2190.411-1.1953.3754.57810.21335.859

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.