A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: NA1143  PDB ID: 3AZH 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11I_DA1:DT292_J0.48-0.334-1.692-28.71325.042-14.224
14I_DA4:DT289_J0.2560.038-0.0487.62-10.048-1.294
15I_DA5:DT288_J0.1090.0040.1917.199-16.614-2.377
17I_DA7:DT286_J0.126-0.027-0.279-4.793-19.4842.994
111I_DA11:DT282_J0.043-0.139-0.746-2.1781.468-9.324
117I_DA17:DT276_J0.233-0.3111.09827.671-21.271-9.207
119I_DA19:DT274_J0.085-0.0960.023-3.895-16.5215.667
124I_DA24:DT269_J0.112-0.1960.181-6.977-13.1994.928
127I_DA27:DT266_J0.322-0.033-0.111-5.349-21.717-2.137
128I_DA28:DT265_J-0.099-0.2510.079-9.96-20.53-1.646
129I_DA29:DT264_J0.3090.0720.2381.052-17.881-1.836
130I_DA30:DT263_J0.189-0.095-1.133-15.678-3.77-0.941
135I_DA35:DT258_J0.112-0.0980.441-8.96.397-0.333
141I_DA41:DT252_J0.153-0.1470.653-3.776-3.916-1.903
142I_DA42:DT251_J-0.0140.0170.301-2.498-6.518-3.213
143I_DA43:DT250_J0.138-0.0770.1071.386-18.454-4.311
151I_DA51:DT242_J0.047-0.062-0.399-4.562-34.2693.642
154I_DA54:DT239_J0.064-0.164-0.54722.427-14.51114.461
155I_DA55:DT238_J0.088-0.249-0.40128.785-29.79715.792
156I_DA56:DT237_J0.1250.094-0.27415.454-23.421-16.765
157I_DA57:DT236_J0.478-0.0410.48119.7-38.274-8.293
161I_DA61:DT232_J-0.043-0.217-0.913-13.022-24.3818.75
167I_DA67:DT226_J0.07-0.1580.6286.387-28.065-7.481
172I_DA72:DT221_J-0.101-0.268-0.809-4.96-18.90613.091
173I_DA73:DT220_J0.117-0.1850.472-2.403-6.915-3.049
177I_DA77:DT216_J0.1790.028-0.00916.716-32.108-8.583
182I_DA82:DT211_J-0.067-0.149-0.1886.642-19.5161.688
183I_DA83:DT210_J-0.022-0.151-0.514-6.023-7.4271.672
185I_DA85:DT208_J0.061-0.2280.7283.711-5.1930.401
195I_DA95:DT198_J0.038-0.175-0.376-10.5380.7410.546
199I_DA99:DT194_J0.44-0.0420.5417.763-30.866-10.227
1102I_DA102:DT191_J0.012-0.091-0.101-11.329-16.22-2.907
1109I_DA109:DT184_J0.090.0430.152-3.239-6.99-4.879
1110I_DA110:DT183_J0.009-0.18-0.558-3.685-10.5766.414
1111I_DA111:DT182_J0.153-0.2560.085-6.7041.0872.392
1113I_DA113:DT180_J-0.035-0.221-0.2194.456-5.443.039
1115I_DA115:DT178_J-0.048-0.161-0.28810.612-9.517-2.086
1124I_DA124:DT169_J0.145-0.025-0.86514.522-23.926-7.614
1126I_DA126:DT167_J0.1770.035-0.607-32.763-22.443-5.127
1127I_DA127:DT166_J0.1-0.1490.311-18.708-14.8150.122
1133I_DA133:DT160_J0.13-0.031-0.699-4.538-5.546-6.278
1139I_DA139:DT154_J0.45-0.0180.5090.855-4.385-4.775
1141I_DA141:DT152_J0.024-0.072-0.677-22.338-32.3692.046
1144I_DA145:DT148_J0.256-0.39-1.123-13.1074.5067.775
13I_DC3:DG290_J0.2540.052-0.044-7.046-3.9364.758
19I_DC9:DG284_J-0.01-0.298-1.08-1.131-21.72811.064
110I_DC10:DG283_J-0.021-0.123-0.468.467-5.319-4.838
112I_DC12:DG281_J-0.026-0.151-1.09211.218-1.954-2.874
113I_DC13:DG280_J-0.0510.1260.003-5.537-16.3665.389
116I_DC16:DG277_J0.513-0.055-0.98237.27-32.582.936
122I_DC22:DG271_J0.040.0120.731-30.857-18.9010.041
125I_DC25:DG268_J-0.025-0.171.384-11.979-0.405-0.049
126I_DC26:DG267_J-0.046-0.1780.7711.266-11.026-2.529
144I_DC44:DG249_J0.103-0.032-0.4514.203-21.1438.741
147I_DC47:DG246_J-0.05-0.090.5558.229-27.716-5.887
149I_DC49:DG244_J-0.089-0.101-0.601-0.211-25.0315.521
150I_DC50:DG243_J-0.0720.0220.1417.809-15.282-2.955
153I_DC53:DG240_J0.09-0.045-0.6436.525-13.3362.578
160I_DC60:DG233_J0.071-0.046-0.026-2.378-14.3783.577
166I_DC66:DG227_J0.408-0.221-1.33829.841-25.9738.247
169I_DC69:DG224_J0.068-0.0060.416-5.676-21.283-2.528
176I_DC76:DG217_J0.167-0.0910.6520.391-3.085-1.502
179I_DC79:DG214_J0.106-0.3191.0152.307-21.391-8.981
184I_DC84:DG209_J0.109-0.044-0.2217.417-3.2261.617
188I_DC88:DG205_J-0.012-0.0780.6438.181-27.1-4.952
189I_DC89:DG204_J0.14-0.3410.6681.218-2.706-3.549
1101I_DC101:DG192_J0.2210.0520.33915.394-13.465-1.0
1107I_DC107:DG186_J0.1130.0370.142-12.348-0.156-0.122
1108I_DC108:DG185_J-0.008-0.2891.408-8.7991.154-1.667
1114I_DC114:DG179_J0.115-0.189-0.450.8370.237-2.639
1116I_DC116:DG177_J0.2880.006-0.6920.487-20.6193.147
1129I_DC129:DG164_J-0.051-0.5252.078-19.0175.572-0.845
1132I_DC132:DG161_J0.022-0.329-0.991-5.522-22.847.048
115I_DG15:DC278_J-0.041-0.111.10819.947-3.421-1.604
118I_DG18:DC275_J0.1360.0020.75620.27-11.763-1.65
131I_DG31:DC262_J-0.4420.013-1.069-30.791-17.9919.933
133I_DG33:DC260_J-0.127-0.145-0.017-2.523-8.01-0.76
139I_DG39:DC254_J-0.0720.017-0.15-1.695.888-0.488
140I_DG40:DC253_J-0.1570.0490.3268.707-13.7641.075
146I_DG46:DC247_J0.1410.0070.24619.632-9.9150.163
158I_DG58:DC235_J-0.169-0.232-0.001-7.295-22.485-2.216
159I_DG59:DC234_J-0.085-0.1720.78410.304-15.655-6.839
163I_DG63:DC230_J-0.31-0.264-0.686-10.57-18.5210.676
168I_DG68:DC225_J-0.264-0.0370.187-3.502-19.9110.101
171I_DG71:DC222_J-0.1250.034-0.1594.458-13.0225.294
178I_DG78:DC215_J-0.044-0.07-0.04714.3334.218-1.22
181I_DG81:DC212_J-0.210.035-0.081-3.4221.4323.838
187I_DG87:DC206_J-0.287-0.1340.669.965-0.8885.362
194I_DG94:DC199_J0.045-0.265-0.881-5.282-18.3242.422
197I_DG97:DC196_J0.0420.0220.43918.859-7.566-2.319
198I_DG98:DC195_J0.0260.068-0.24214.15610.0513.27
1100I_DG100:DC193_J-0.281-0.0340.89914.9373.5671.231
1103I_DG103:DC190_J-0.132-0.150.612-2.7720.085-2.052
1121I_DG121:DC172_J0.0220.0580.32711.477-4.846-4.361
1122I_DG122:DC171_J-0.153-0.0650.25117.7610.845-5.144
1125I_DG125:DC168_J0.146-0.29-1.351-16.48-7.115-6.448
1131I_DG131:DC162_J-0.193-0.042-0.186-20.136-21.6143.875
1134I_DG134:DC159_J-0.106-0.0580.10717.325-3.314-4.942
1135I_DG135:DC158_J-0.056-0.34-0.9241.962-13.2085.702
1137I_DG137:DC156_J-0.016-0.208-1.098-0.133-21.7628.526
1138I_DG138:DC155_J-0.190.053-0.451-15.35-9.8281.738
1143I_DG144:DC149_J0.034-0.014-1.104-21.6575.029-3.894
12I_DT2:DA291_J-0.0540.002-0.08-12.974-4.46-5.206
16I_DT6:DA287_J0.026-0.152-0.1278.7852.242.455
18I_DT8:DA285_J0.014-0.094-0.4242.773-16.77-2.683
114I_DT14:DA279_J0.037-0.2080.1447.258-25.281-11.456
120I_DT20:DA273_J-0.1940.044-0.161-4.255-25.88-3.372
121I_DT21:DA272_J0.056-0.139-0.9212.814-23.929-5.61
123I_DT23:DA270_J-0.171-0.0450.045-15.751-17.431-1.996
132I_DT32:DA261_J-0.0760.03-0.369-0.921-16.3912.443
134I_DT34:DA259_J0.034-0.1760.06912.835-9.0182.497
136I_DT36:DA257_J0.079-0.140.516-11.549-4.328-1.086
137I_DT37:DA256_J-0.119-0.2081.429-18.922-4.619-3.019
138I_DT38:DA255_J-0.318-0.1970.868-1.644-23.204-13.412
145I_DT45:DA248_J-0.281-0.0880.4360.843-19.054-2.554
148I_DT48:DA245_J-0.2230.064-0.5760.901-30.049-9.246
152I_DT52:DA241_J0.071-0.252-0.8374.273-26.0381.104
162I_DT62:DA231_J0.084-0.213-0.5178.032-21.0995.686
164I_DT64:DA229_J0.009-0.117-0.80910.027-22.5481.212
165I_DT65:DA228_J-0.01-0.011-0.64615.984-12.131-2.272
170I_DT70:DA223_J-0.128-0.1080.5460.235-12.826-7.071
174I_DT74:DA219_J-0.056-0.1570.058-6.153-8.3683.104
175I_DT75:DA218_J-0.107-0.1370.096-2.644-13.4162.626
180I_DT80:DA213_J-0.071-0.066-0.093-10.2481.2491.039
186I_DT86:DA207_J-0.0980.0490.0918.458-7.326-2.247
190I_DT90:DA203_J-0.072-0.2520.3265.17-22.15-2.654
191I_DT91:DA202_J0.026-0.07-0.7830.157-15.464-2.421
192I_DT92:DA201_J0.202-0.095-0.103-2.272-4.4082.996
193I_DT93:DA200_J-0.110.008-0.64510.253-4.417-4.263
196I_DT96:DA197_J0.088-0.062-0.48614.922-14.671-3.18
1104I_DT104:DA189_J0.027-0.022-0.1890.863-10.487-3.701
1105I_DT105:DA188_J-0.054-0.3521.175-3.574-6.719-4.913
1106I_DT106:DA187_J-0.210.027-0.282-0.184-35.877-6.718
1112I_DT112:DA181_J-0.06-0.0840.437-4.376-5.862-0.81
1117I_DT117:DA176_J-0.077-0.054-0.642-0.201-22.109-4.425
1118I_DT118:DA175_J-0.098-0.080.734-12.711-7.184-6.503
1119I_DT119:DA174_J-0.1550.0620.0797.797-14.235-3.639
1120I_DT120:DA173_J-0.124-0.1790.24624.6259.0293.509
1123I_DT123:DA170_J-0.246-0.039-0.70812.26715.404-17.811
1128I_DT128:DA165_J-0.328-0.1910.988-4.663-22.558-9.808
1130I_DT130:DA163_J-0.31-0.074-0.544-16.685-29.345-0.169
1136I_DT136:DA157_J0.237-0.2990.38627.064-4.68810.993
1140I_DT140:DA153_J-0.281-0.280.321-1.837-13.341.482
1142I_DT142:DA151_J0.01-0.143-0.633-2.272-29.733-3.884

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.