A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: NA1144  PDB ID: 3AZI 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11I_DA1:DT292_J0.277-0.433-1.605-23.98215.909-5.617
14I_DA4:DT289_J0.1140.008-0.41812.127-7.3010.294
15I_DA5:DT288_J0.1770.0070.1410.806-21.647-1.752
17I_DA7:DT286_J0.155-0.27-0.949-1.47-4.614-4.086
111I_DA11:DT282_J0.1760.082-0.423-0.52711.849-16.651
117I_DA17:DT276_J0.147-0.0310.46.741-10.9751.179
119I_DA19:DT274_J-0.192-0.081-0.939-20.83-17.8512.11
124I_DA24:DT269_J0.0-0.031-0.397-13.054-5.858-7.049
127I_DA27:DT266_J-0.0160.14-0.42-23.261-40.152-7.452
128I_DA28:DT265_J0.082-0.1730.52912.611-9.984-1.45
129I_DA29:DT264_J0.176-0.0040.58315.422-14.348-6.079
130I_DA30:DT263_J-0.01-0.292-0.966-4.071-29.3676.522
135I_DA35:DT258_J0.111-0.3290.177-18.9394.0556.621
141I_DA41:DT252_J-0.004-0.1660.0394.534-15.613-0.684
142I_DA42:DT251_J-0.001-0.042-0.115-19.2220.99-2.073
143I_DA43:DT250_J0.053-0.1770.525-5.36511.8267.25
151I_DA51:DT242_J0.048-0.16-0.67312.764-26.1517.779
154I_DA54:DT239_J0.081-0.102-0.746-0.406-0.063-7.341
155I_DA55:DT238_J-0.07-0.226-0.353-0.03-8.544-0.422
156I_DA56:DT237_J0.241-0.0850.63618.753-19.577-0.155
157I_DA57:DT236_J0.175-0.0350.82220.809-13.52-13.759
161I_DA61:DT232_J0.08-0.058-0.469-7.701-17.6580.582
167I_DA67:DT226_J0.22-0.1390.5426.838-38.459-10.146
172I_DA72:DT221_J0.004-0.1290.389-2.114-0.4991.348
173I_DA73:DT220_J0.18-0.19-0.2232.394-4.2350.959
177I_DA77:DT216_J0.094-0.009-0.279-5.804-14.582-12.163
182I_DA82:DT211_J0.082-0.136-0.2814.326-11.7350.405
183I_DA83:DT210_J0.122-0.33-0.0957.681-2.1479.446
185I_DA85:DT208_J0.188-0.078-0.3734.086-13.9721.797
195I_DA95:DT198_J0.074-0.05-0.571-5.6776.871-3.471
199I_DA99:DT194_J0.1460.0640.2249.009-28.7-8.938
1102I_DA102:DT191_J0.064-0.284-0.68110.658-17.49811.808
1108I_DA109:DT184_J0.065-0.0530.41512.726-14.943-1.689
1109I_DA110:DT183_J0.104-0.1450.0043.659-11.4192.203
1110I_DA111:DT182_J0.2490.0080.45818.036-4.3450.046
1112I_DA113:DT180_J0.278-0.1990.959-36.79944.5382.66
1114I_DA115:DT178_J0.186-0.033-0.3243.686-10.915-4.958
1123I_DA124:DT169_J0.281-0.031-0.23118.184-45.5461.664
1130I_DA133:DT160_J-0.085-0.099-1.345-20.602-28.2346.292
1136I_DA139:DT154_J0.083-0.1940.444-1.283-17.324-1.028
1138I_DA141:DT152_J0.190.0510.011-4.522-18.705-3.302
1142I_DA145:DT148_J0.143-0.185-0.798-10.1414.962-5.645
13I_DC3:DG290_J0.184-0.1021.017-33.15427.7484.009
19I_DC9:DG284_J0.02-0.055-0.16-6.564-17.7852.834
110I_DC10:DG283_J0.141-0.16-0.517-13.12-5.512-0.5
112I_DC12:DG281_J-0.219-0.199-0.7169.802-10.159-5.541
113I_DC13:DG280_J0.0410.0660.084-10.377-8.4730.776
116I_DC16:DG277_J0.285-0.064-0.05718.197-12.355-5.671
122I_DC22:DG271_J0.008-0.0380.426-14.201-14.172-3.315
125I_DC25:DG268_J-0.192-0.070.161-5.715-10.552-8.84
126I_DC26:DG267_J0.041-0.0821.022-14.056-9.202-2.419
144I_DC44:DG249_J-0.005-0.0080.068.916-2.0192.24
147I_DC47:DG246_J-0.177-0.21.322-23.487-20.648-8.653
149I_DC49:DG244_J-0.074-0.059-0.347-0.8330.86-2.507
150I_DC50:DG243_J0.1550.0310.5271.5240.6991.33
153I_DC53:DG240_J0.106-0.087-1.12729.5186.111-5.182
160I_DC60:DG233_J0.052-0.1810.9727.5279.6757.447
166I_DC66:DG227_J-0.1910.008-0.46.2274.6310.552
169I_DC69:DG224_J-0.066-0.1861.010.989-18.383-6.781
176I_DC76:DG217_J-0.006-0.0440.107-5.8016.555-0.525
179I_DC79:DG214_J-0.059-0.10.308-4.022-30.198-2.04
184I_DC84:DG209_J0.202-0.047-1.30742.321-19.5575.58
188I_DC88:DG205_J0.075-0.0080.386-4.855-24.874-2.094
189I_DC89:DG204_J0.069-0.0910.762-26.087-12.492-1.918
1101I_DC101:DG192_J0.3410.008-0.09420.362-21.1084.858
1107I_DC108:DG185_J-0.1580.0030.1469.931-16.091-5.933
1113I_DC114:DG179_J-0.081-0.4031.191-0.0881.671-4.707
1115I_DC116:DG177_J0.0770.018-0.24-1.2042.268-2.174
1126I_DC129:DG164_J-0.226-0.1851.732-28.482-7.219-4.494
1129I_DC132:DG161_J0.0840.006-0.2686.802-17.71-0.96
115I_DG15:DC278_J-0.2140.041-0.09-9.257-14.367-2.534
118I_DG18:DC275_J-0.137-0.131-0.274-3.811-22.213.094
131I_DG31:DC262_J0.023-0.1730.494-16.7682.8020.377
133I_DG33:DC260_J-0.302-0.206-0.891-12.991-20.7788.213
139I_DG39:DC254_J-0.0820.0370.0114.3361.1112.338
140I_DG40:DC253_J0.005-0.0460.91117.642-9.161-6.585
146I_DG46:DC247_J-0.1110.038-0.079-11.4273.5361.926
158I_DG58:DC235_J0.182-0.2040.964.098-26.589-9.376
159I_DG59:DC234_J-0.261-0.0940.2781.85820.315.054
163I_DG63:DC230_J-0.106-0.111-1.261-33.15-11.260.929
168I_DG68:DC225_J-0.143-0.110.244-5.475-9.188-4.771
171I_DG71:DC222_J-0.359-0.05-0.003-2.478-5.4084.222
178I_DG78:DC215_J0.124-0.2590.114-7.342-3.59-0.735
181I_DG81:DC212_J-0.1040.117-0.424-7.5-8.5422.184
187I_DG87:DC206_J-0.121-0.472-1.523-8.623-1.6793.185
194I_DG94:DC199_J-0.14-0.12-0.6773.132-6.9473.928
197I_DG97:DC196_J-0.0360.0170.2246.249-12.187-0.487
198I_DG98:DC195_J-0.059-0.367-1.307-2.803-5.4284.081
1100I_DG100:DC193_J-0.218-0.1680.36815.01615.2-0.736
1103I_DG103:DC190_J-0.0170.010.129-5.651-11.04-2.115
1120I_DG121:DC172_J-0.256-0.0691.0087.3740.5232.749
1121I_DG122:DC171_J0.0490.0330.64511.004-0.831.374
1124I_DG125:DC168_J-0.29-0.347-1.651-27.65-28.51713.798
1128I_DG131:DC162_J-0.282-0.131-0.534-15.013-18.892-0.857
1131I_DG134:DC159_J-0.0320.003-0.776-20.821-1.159-6.138
1132I_DG135:DC158_J0.035-0.1170.33-5.475-5.522-1.655
1134I_DG137:DC156_J-0.0810.012-0.3070.635-13.9550.171
1135I_DG138:DC155_J-0.274-0.146-1.03-12.384-20.7588.644
1141I_DG144:DC149_J-0.151-0.39-1.982-28.623-9.855.262
12I_DT2:DA291_J0.0-0.132-2.01728.547-15.864-7.622
16I_DT6:DA287_J-0.073-0.058-0.24114.7931.671-1.972
18I_DT8:DA285_J-0.008-0.039-0.4068.303-4.743-4.233
114I_DT14:DA279_J-0.0950.010.234-3.364-3.937-0.563
120I_DT20:DA273_J-0.034-0.061-0.3769.275-18.9812.653
121I_DT21:DA272_J-0.007-0.13-0.573-2.613-15.465-6.597
123I_DT23:DA270_J-0.0340.00.183-20.55-15.371-6.338
132I_DT32:DA261_J-0.0590.085-0.14423.7732.7-2.556
134I_DT34:DA259_J0.007-0.048-0.072-3.688-5.4862.374
136I_DT36:DA257_J-0.075-0.1291.222-18.4035.927-1.201
137I_DT37:DA256_J-0.124-0.1360.298-6.5260.749-3.286
138I_DT38:DA255_J-0.2680.067-0.095-10.024-34.233-9.599
145I_DT45:DA248_J-0.312-0.129-0.577-10.886-23.945.963
148I_DT48:DA245_J-0.166-0.0420.774-19.647-3.9693.32
152I_DT52:DA241_J0.028-0.075-0.3016.72-11.615-7.572
162I_DT62:DA231_J-0.069-0.232-0.40219.012-1.7261.115
164I_DT64:DA229_J-0.0990.0360.024-5.544-11.993-3.603
165I_DT65:DA228_J-0.073-0.0980.1224.134.459-0.524
170I_DT70:DA223_J-0.065-0.1680.453.7725.966-2.146
174I_DT74:DA219_J-0.019-0.006-0.4299.316-7.913-0.992
175I_DT75:DA218_J-0.221-0.113-0.5411.259-1.8111.008
180I_DT80:DA213_J-0.188-0.016-0.223-12.611-5.322-2.553
186I_DT86:DA207_J0.006-0.188-0.54314.071-13.7020.876
190I_DT90:DA203_J-0.2430.258-0.135-19.606-24.618-9.277
191I_DT91:DA202_J-0.123-0.0380.274-24.476-19.052.867
192I_DT92:DA201_J-0.083-0.052-0.159-10.785-10.8624.674
193I_DT93:DA200_J0.071-0.287-0.1971.147-0.5366.213
196I_DT96:DA197_J0.0090.0070.0069.336-3.333-2.68
1104I_DT104:DA189_J-0.077-0.2480.892.347-3.729-4.681
1105I_DT105:DA188_J-0.2340.0550.154-10.139-21.938-9.962
1106I_DT106:DA187_J-0.0280.066-0.3938.361-24.111-3.278
1111I_DT112:DA181_J0.0850.081-1.19229.744-15.572-0.524
1116I_DT117:DA176_J-0.1880.050.468-20.164-15.357-6.609
1117I_DT118:DA175_J-0.3811.715-0.23-64.1392.074-112.705
1118I_DT119:DA174_J-0.31-0.224-0.769-7.72-37.0827.122
1119I_DT120:DA173_J-0.1940.022-0.204-13.289-32.334-0.76
1122I_DT123:DA170_J-0.0680.066-0.28821.144-6.686-10.233
1125I_DT128:DA165_J-0.331-0.2580.759-11.069-27.8662.286
1127I_DT130:DA163_J-0.3220.0340.245-24.944-17.103-5.777
1133I_DT136:DA157_J0.035-0.3720.6787.253-12.0330.911
1137I_DT140:DA153_J-0.147-0.1480.325-7.748-1.2430.867
1139I_DT142:DA151_J-0.106-0.0410.025-10.8-18.3390.414
1140I_DT143:DA150_J-0.11-0.122-0.8385.905-5.779-0.675

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.