A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
Search for released structures

NDB ID: NA1146  PDB ID: 3AZK 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11I_DA1:DT292_J-0.003-0.256-0.997-11.39415.624-0.211
14I_DA4:DT289_J0.154-0.027-0.0025.786-14.645.352
15I_DA5:DT288_J0.183-0.1050.3313.033-12.3252.174
17I_DA7:DT286_J0.241-0.028-0.17.191-17.960.882
111I_DA11:DT282_J0.173-0.102-0.694-0.8551.868-11.288
117I_DA17:DT276_J0.034-0.1050.81212.165-12.089-4.488
119I_DA19:DT274_J0.0750.062-0.121-3.559-16.769-0.682
124I_DA24:DT269_J0.0330.078-0.288-10.506-17.5310.535
127I_DA27:DT266_J0.225-0.0040.291-0.935-14.209-2.837
128I_DA28:DT265_J0.269-0.0790.5622.07-0.644-5.738
129I_DA29:DT264_J0.2330.083-0.0491.944-17.229-4.842
130I_DA30:DT263_J0.234-0.041-0.1066.734-23.1251.693
135I_DA35:DT258_J0.154-0.108-0.504-13.18411.546-5.382
141I_DA41:DT252_J0.071-0.3221.22219.588-3.2858.823
142I_DA42:DT251_J0.0250.0850.403-4.701-3.683-5.844
143I_DA43:DT250_J0.133-0.1050.3190.818-5.611-5.332
151I_DA51:DT242_J-0.043-0.047-0.557-13.049-23.2355.891
154I_DA54:DT239_J-0.169-0.304-1.373-13.701-19.046.803
155I_DA55:DT238_J-0.06-0.061-0.0419.088-21.376-4.757
156I_DA56:DT237_J0.112-0.051-0.36713.406-30.5591.618
157I_DA57:DT236_J0.3190.0880.44123.247-32.859-11.748
161I_DA61:DT232_J0.08-0.0710.294-19.95-1.815.434
167I_DA67:DT226_J0.0850.101-0.177-3.096-33.438-7.925
172I_DA72:DT221_J-0.113-0.006-0.162-4.964-7.1982.546
173I_DA73:DT220_J0.196-0.111-0.038-1.057-7.0772.622
177I_DA77:DT216_J0.127-0.078-0.54212.025-33.686-0.414
182I_DA82:DT211_J0.1270.0130.498-0.405-2.496-2.861
183I_DA83:DT210_J0.2140.052-0.025.2452.831-2.802
185I_DA85:DT208_J0.116-0.0120.057-0.591-9.773-0.092
195I_DA95:DT198_J0.081-0.176-0.946-7.026-4.309-1.616
199I_DA99:DT194_J0.264-0.0230.404-3.588-31.331-11.692
1102I_DA102:DT191_J0.062-0.1660.481-1.243-8.6396.529
1109I_DA109:DT184_J-0.004-0.039-0.133-3.617-2.622-4.263
1110I_DA110:DT183_J0.032-0.049-0.14-0.855-11.3552.659
1111I_DA111:DT182_J0.072-0.0250.44110.381-5.486-2.246
1113I_DA113:DT180_J-0.119-0.340.6725.011-1.0756.95
1115I_DA115:DT178_J-0.044-0.216-0.262-5.775-0.8186.229
1124I_DA124:DT169_J0.020.01-0.81718.71-14.941-13.642
1126I_DA126:DT167_J0.0020.001-0.451-39.452-29.946-4.377
1127I_DA127:DT166_J-0.079-0.103-0.07-21.313-6.0286.75
1133I_DA133:DT160_J0.2580.0110.1099.334-17.123-0.121
1139I_DA139:DT154_J0.388-0.0010.23811.749-3.103-3.265
1141I_DA141:DT152_J0.282-0.1390.349-2.729-12.344-1.948
1145I_DA145:DT148_J0.191-0.365-1.304-7.897-13.0830.398
13I_DC3:DG290_J-0.030.017-0.3972.671-13.5871.893
19I_DC9:DG284_J-0.036-0.116-0.858-5.004-19.59710.074
110I_DC10:DG283_J0.085-0.403-1.0960.8287.498-5.329
112I_DC12:DG281_J0.03-0.245-0.9736.774-7.194-3.153
113I_DC13:DG280_J0.0940.0340.133-11.651-8.4413.369
116I_DC16:DG277_J0.384-0.03-0.723.304-15.509-1.694
122I_DC22:DG271_J0.084-0.1010.342-11.95-14.079-3.034
125I_DC25:DG268_J-0.055-0.1981.581-24.6391.31-0.698
126I_DC26:DG267_J0.099-0.0430.4934.883-3.6171.448
144I_DC44:DG249_J0.034-0.0180.205-0.975-3.6581.7
147I_DC47:DG246_J-0.0330.080.0420.894-31.875-1.367
149I_DC49:DG244_J0.022-0.028-0.382-2.558-18.7583.218
150I_DC50:DG243_J-0.057-0.010.118-1.764-7.738-5.36
153I_DC53:DG240_J0.199-0.317-0.8683.915-24.2857.546
160I_DC60:DG233_J0.085-0.046-0.211-7.42-6.223-0.014
166I_DC66:DG227_J0.0870.011-0.45214.590.15-2.319
169I_DC69:DG224_J0.06-0.0450.947-0.123-10.895-3.035
176I_DC76:DG217_J0.1870.025-0.479.417-5.8932.625
179I_DC79:DG214_J0.064-0.1050.3466.151-29.157-6.942
184I_DC84:DG209_J0.117-0.089-0.55715.1374.4063.227
188I_DC88:DG205_J0.051-0.0710.6099.682-30.896-5.177
189I_DC89:DG204_J0.143-0.2760.871-7.32212.3252.633
1101I_DC101:DG192_J0.0920.1160.5755.196-17.591-0.507
1107I_DC107:DG186_J0.105-0.102-1.08917.872-3.6640.225
1108I_DC108:DG185_J0.1060.0250.2914.082-14.526-3.183
1114I_DC114:DG179_J0.138-0.218-1.05415.011-9.2241.524
1116I_DC116:DG177_J0.154-0.0690.08.485-13.181-1.888
1129I_DC129:DG164_J0.12-0.4741.76-10.787-1.2212.399
1132I_DC132:DG161_J0.021-0.163-0.5795.182-22.6724.087
115I_DG15:DC278_J-0.152-0.091-0.255-3.155-16.9260.425
118I_DG18:DC275_J-0.069-0.1571.39720.7140.5784.181
131I_DG31:DC262_J-0.047-0.027-0.592-26.80510.683-0.986
133I_DG33:DC260_J-0.074-0.19-0.59911.79-13.092.799
139I_DG39:DC254_J-0.044-0.075-1.227-17.878-3.967-1.304
140I_DG40:DC253_J-0.18-0.004-0.498-5.018-10.2841.036
146I_DG46:DC247_J-0.484-0.014-0.0812.204-17.3179.584
158I_DG58:DC235_J-0.127-0.261-0.593-5.46-28.2150.853
159I_DG59:DC234_J-0.2510.0-0.2281.492-3.1042.057
163I_DG63:DC230_J-0.069-0.063-0.604-6.051-5.5611.682
168I_DG68:DC225_J-0.328-0.1060.56318.65219.7441.269
171I_DG71:DC222_J-0.164-0.118-0.7813.177-16.1929.248
178I_DG78:DC215_J-0.092-0.077-0.11312.2899.558-2.426
181I_DG81:DC212_J-0.2020.047-0.190.199-0.7132.402
187I_DG87:DC206_J-0.261-0.1740.47311.97119.4064.752
194I_DG94:DC199_J-0.054-0.165-1.091-9.031-12.322.435
197I_DG97:DC196_J0.010.095-0.0096.291-17.15-1.478
198I_DG98:DC195_J0.015-0.109-0.065-2.1567.6631.126
1100I_DG100:DC193_J-0.361-0.1140.84612.6174.6976.823
1103I_DG103:DC190_J0.0850.01-0.173-12.875-14.003-1.517
1121I_DG121:DC172_J0.009-0.0691.40824.6791.131-3.563
1122I_DG122:DC171_J-0.017-0.0470.47721.1472.693-6.496
1125I_DG125:DC168_J0.014-0.438-1.484-8.977-10.7322.305
1131I_DG131:DC162_J0.112-0.263-0.289-7.359-25.22-1.113
1134I_DG134:DC159_J-0.103-0.073-0.09810.655-4.987-1.47
1135I_DG135:DC158_J0.131-0.268-0.545-0.835-5.488-1.687
1137I_DG137:DC156_J-0.167-0.091-0.3159.887-9.7854.357
1138I_DG138:DC155_J-0.139-0.098-0.326-2.8-10.2043.913
1144I_DG144:DC149_J-0.0330.038-0.0818.967-4.4281.214
12I_DT2:DA291_J0.145-0.24-1.15514.103-8.8433.758
16I_DT6:DA287_J0.005-0.0880.04212.162-5.1010.519
18I_DT8:DA285_J-0.041-0.098-0.44913.03-8.498-2.715
114I_DT14:DA279_J0.108-0.094-0.4942.93-8.697-4.719
120I_DT20:DA273_J0.015-0.08-0.511.639-21.6942.322
121I_DT21:DA272_J0.089-0.019-0.3941.302-26.6830.733
123I_DT23:DA270_J-0.087-0.033-0.283-6.06-21.9722.088
132I_DT32:DA261_J-0.0670.002-0.16112.576-6.787-1.218
134I_DT34:DA259_J-0.045-0.005-0.2189.078-7.214-0.376
136I_DT36:DA257_J-0.267-0.089-0.458-8.242.735-6.68
137I_DT37:DA256_J-0.3460.1390.504-27.262-5.401-6.785
138I_DT38:DA255_J-0.2930.1-0.12-16.501-26.939-6.878
145I_DT45:DA248_J0.009-0.1090.4272.514-17.884-0.887
148I_DT48:DA245_J-0.0820.0050.12-4.048-21.401-3.257
152I_DT52:DA241_J0.025-0.12-0.58310.608-3.419-5.225
162I_DT62:DA231_J-0.075-0.0150.225-9.295-10.1891.555
164I_DT64:DA229_J0.01-0.165-0.3235.025-6.241.347
165I_DT65:DA228_J-0.06-0.073-0.45812.313-5.825-1.203
170I_DT70:DA223_J-0.1110.012-0.0710.9437.951-3.627
174I_DT74:DA219_J-0.05-0.121-0.0051.985-13.0542.997
175I_DT75:DA218_J-0.012-0.132-0.8447.64-21.9168.443
180I_DT80:DA213_J-0.173-0.014-0.207-0.4750.554-4.458
186I_DT86:DA207_J-0.1960.0860.164-1.407-10.21-3.572
190I_DT90:DA203_J-0.1420.046-0.0762.693-18.751-3.412
191I_DT91:DA202_J0.091-0.088-0.4174.738-15.4235.569
192I_DT92:DA201_J-0.004-0.224-0.574-1.908-14.1518.442
193I_DT93:DA200_J0.01-0.22-0.761-2.845-16.3615.296
196I_DT96:DA197_J-0.109-0.06-0.4096.83-4.298-0.91
1104I_DT104:DA189_J-0.099-0.0640.344-4.389-11.293-2.019
1105I_DT105:DA188_J-0.067-0.3010.909-6.524-8.525-4.763
1106I_DT106:DA187_J-0.094-0.150.65-0.018-13.512-2.332
1112I_DT112:DA181_J-0.041-0.053-0.2715.433-15.5311.044
1117I_DT117:DA176_J-0.10.0550.496-10.738-15.174-4.887
1118I_DT118:DA175_J-0.015-0.2570.738-7.087-9.230.767
1119I_DT119:DA174_J-0.275-0.0370.692-3.599-7.748-4.289
1120I_DT120:DA173_J0.006-0.06-0.15510.072-11.5921.4
1123I_DT123:DA170_J0.0320.295-1.11644.285-20.079-15.455
1128I_DT128:DA165_J-0.146-0.241.779-26.1443.125-5.481
1130I_DT130:DA163_J-0.128-0.056-0.096-11.531-20.273-0.392
1136I_DT136:DA157_J0.21-0.3420.17513.68-9.7557.753
1140I_DT140:DA153_J-0.214-0.301-0.0094.4-6.775.282
1142I_DT142:DA151_J0.032-0.258-0.4822.336-7.2564.58
1143I_DT143:DA150_J-0.005-0.159-0.51813.174-8.224-0.966

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.