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As of 14-Aug-2019 number of released structures: 10334
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NDB ID: NA1146  PDB ID: 3AZK 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11II_DA1DT2:DA291DT292_JJ-0.562-0.2392.8423.1371.67730.209-0.7441.612.7543.203-5.99430.413
14II_DA4DA5:DT288DT289_JJ-0.1750.0173.031-4.561-1.19236.1670.18-0.3083.028-1.9117.30836.463
15II_DA5DT6:DA287DT288_JJ0.33-0.8413.3013.5942.35631.475-1.9720.063.2484.318-6.58731.76
17II_DA7DT8:DA285DT286_JJ-0.095-0.6333.166-2.101-3.93137.954-0.482-0.1143.214-6.0193.21738.205
111II_DA11DC12:DG281DT282_JJ0.122-0.5033.261-1.041.3632.051-1.152-0.4063.2322.4611.88232.095
117II_DA17DG18:DC275DT276_JJ1.148-0.2052.924-4.6655.25732.969-1.094-2.6392.6789.1348.10533.689
119II_DA19DT20:DA273DT274_JJ-0.432-0.7763.0510.511-3.08837.403-0.8260.7353.097-4.805-0.79537.529
124II_DA24DC25:DG268DT269_JJ-0.1730.6713.801-13.4263.13736.4890.556-1.6693.6824.80520.56238.924
127II_DA27DA28:DT265DT266_JJ-0.076-0.1112.677-7.252-2.79530.2750.231-0.9922.624-5.24313.60531.234
128II_DA28DA29:DT264DT265_JJ-0.502-0.0853.7680.582-8.75343.4750.8270.7283.71-11.674-0.77744.309
129II_DA29DA30:DT263DT264_JJ0.014-0.0393.0870.0913.97736.449-0.577-0.013.0666.334-0.14536.658
130II_DA30DG31:DC262DT263_JJ-0.159-0.1024.118-2.16.93938.785-1.182-0.0774.04410.3393.12939.432
135II_DA35DT36:DA257DT258_JJ-0.146-1.193.2570.647-2.93436.758-1.480.323.336-4.643-1.02336.877
141II_DA41DA42:DT251DT252_JJ-1.9951.1084.2252.9168.13935.4080.2953.7214.19713.142-4.70836.415
142II_DA42DA43:DT250DT251_JJ-0.071-0.9723.1861.734.38230.309-2.6590.463.018.318-3.28430.664
143II_DA43DC44:DG249DT250_JJ0.587-0.8913.4973.1152.62629.438-2.326-0.4463.4495.136-6.09429.712
151II_DA51DT52:DA241DT242_JJ-0.852-0.0782.994-7.886-2.45928.5220.3410.0833.109-4.86315.59729.671
154II_DA54DA55:DT238DT239_JJ-0.8010.7712.709-16.462-0.59629.0831.433-1.0532.745-1.08429.94433.336
155II_DA55DA56:DT237DT238_JJ0.0270.4353.2497.8536.81739.171-0.140.8473.2249.956-11.4740.475
156II_DA56DA57:DT236DT237_JJ0.2830.7663.08-0.5-10.44838.482.229-0.4682.784-15.5070.74339.824
157II_DA57DG58:DC235DT236_JJ1.2851.6684.11815.298-5.53641.742.8550.1324.084-7.439-20.55644.666
161II_DA61DT62:DA231DT232_JJ-0.633-1.1663.064-0.503-0.24930.686-2.1561.1033.083-0.4710.9530.691
167II_DA67DG68:DC225DT226_JJ1.7661.112.709-6.906-13.71837.7132.712-3.1031.872-20.22710.18340.615
172II_DA72DA73:DT220DT221_JJ-0.170.0723.247-1.7462.75932.234-0.354-0.0013.2464.9533.13432.395
173II_DA73DT74:DA219DT220_JJ-0.064-0.6313.2880.9758.4429.46-2.8260.3092.99316.177-1.86930.634
177II_DA77DG78:DC215DT216_JJ1.3890.6853.088-0.051-3.05935.5421.532-2.2753.019-5.0010.08335.669
182II_DA82DA83:DT210DT211_JJ0.159-0.2133.2630.5731.99834.319-0.672-0.183.2483.382-0.96934.38
183II_DA83DC84:DG209DT210_JJ0.255-0.5643.1333.9863.3631.092-1.6360.243.0646.213-7.37231.515
185II_DA85DT86:DA207DT208_JJ-0.086-0.7373.282-0.6656.11332.099-2.3520.043.09410.9311.18932.667
195II_DA95DT96:DA197DT198_JJ-0.286-0.7423.135-1.7042.58528.996-2.0090.2143.075.1443.39129.157
199II_DA99DG100:DC193DT194_JJ2.1280.0952.8431.555-10.74133.9331.534-3.2842.778-17.846-2.58435.578
1102II_DA102DG103:DC190DT191_JJ-1.190.1323.739-1.7754.67534.019-0.621.6933.7787.9373.01334.374
1109II_DA109DA110:DT183DT184_JJ0.274-0.2793.190.0894.55832.276-1.266-0.4743.1238.149-0.1632.588
1110II_DA110DA111:DT182DT183_JJ-0.622-0.0962.875-7.608-9.28835.9160.9320.0742.88-14.56911.93437.807
1111II_DA111DT112:DA181DT182_JJ0.039-0.7773.4974.536-0.51334.962-1.2010.6563.485-0.85-7.5135.25
1113II_DA113DC114:DG179DT180_JJ-0.148-0.3953.2711.2184.8731.276-1.4752.0752.9528.631-19.88233.526
1115II_DA115DC116:DG177DT178_JJ0.353-0.8933.3773.017-8.35330.5050.016-0.053.511-15.468-5.58831.742
1124II_DA124DG125:DC168DT169_JJ0.822-0.1994.1912.00115.97934.505-2.92-0.9363.78125.302-3.16937.974
1126II_DA126DA127:DT166DT167_JJ0.0450.5432.616-2.703-1.3940.0830.916-0.312.588-2.0253.93740.193
1127II_DA127DT128:DA165DT166_JJ-0.445-1.0373.842-9.723-10.08831.2670.223-1.1593.943-17.64917.0134.191
1133II_DA133DG134:DC159DT160_JJ-0.24-0.2493.157-1.6837.3332.927-1.570.1523.04112.7252.92133.751
1139II_DA139DT140:DA153DT154_JJ0.155-1.1373.5660.378-8.34537.615-0.556-0.1823.726-12.75-0.57738.499
1141II_DA141DT142:DA151DT152_JJ0.445-0.1963.1096.7671.61336.062-0.5230.1833.1272.576-10.80736.705
13II_DC3DA4:DT289DG290_JJ-0.4960.8993.237-1.6358.75735.610.1970.5583.37514.052.62236.673
19II_DC9DC10:DG283DG284_JJ-0.950.4693.34-2.5034.91231.396-0.081.2543.4358.9894.5831.864
110II_DC10DA11:DT282DG283_JJ-0.3370.053.543-3.61811.22731.782-1.895-0.063.38419.6756.3433.847
112II_DC12DC13:DG280DG281_JJ0.469-0.9793.622-2.43922.35332.677-4.148-0.9882.44935.0383.82339.491
113II_DC13DT14:DA279DG280_JJ-0.9220.8022.9618.29915.73424.466-1.4693.3592.57332.239-17.00430.169
116II_DC16DA17:DT276DG277_JJ0.8652.863.364-4.106-16.05350.1184.165-1.2162.335-18.3814.70152.618
122II_DC22DT23:DA270DG271_JJ0.079-0.0393.0237.1237.72628.462-1.5211.1822.85215.079-13.90130.303
125II_DC25DC26:DG267DG268_JJ-0.2160.0732.6874.869-0.94335.8450.2270.9092.633-1.523-7.86536.175
126II_DC26DA27:DT266DG267_JJ-0.5562.3743.506-2.88-18.2248.2693.9260.4512.541-21.3943.38251.476
144II_DC44DT45:DA248DG249_JJ-0.093-0.2733.2440.8237.64331.603-1.8030.3083.09213.78-1.48532.502
147II_DC47DT48:DA245DG246_JJ0.2740.6683.9624.2229.47939.029-0.3580.1934.01713.892-6.18840.333
149II_DC49DC50:DG243DG244_JJ-0.8320.3173.286-7.5024.1233.958-0.1180.213.4026.91812.59834.989
150II_DC50DA51:DT242DG243_JJ0.264-0.0423.4333.21120.74634.296-2.580.0042.95531.767-4.91740.046
153II_DC53DA54:DT239DG240_JJ-0.2480.6443.7352.64428.99518.451-4.6750.9452.54658.071-5.29434.363
160II_DC60DA61:DT232DG233_JJ-0.3070.4983.618-9.7517.16139.105-0.178-0.7743.62310.414.16240.863
166II_DC66DA67:DT226DG227_JJ-1.3290.9893.777-1.8913.32439.8220.9971.6883.9014.8662.76939.998
169II_DC69DT70:DA223DG224_JJ0.7031.1413.34812.034-12.56740.2842.7450.2182.966-17.305-16.5743.737
176II_DC76DA77:DT216DG217_JJ-0.8122.2293.4211.237-3.47442.7673.3971.2343.216-4.753-1.69342.919
179II_DC79DT80:DA213DG214_JJ1.6021.253.3289.195-6.94741.6692.409-1.2393.352-9.548-12.63843.164
184II_DC84DA85:DT208DG209_JJ-0.3720.2763.731-1.3749.85834.53-1.1830.3753.68116.1952.25835.894
188II_DC88DC89:DG204DG205_JJ1.6341.2134.0220.596-10.2639.9043.048-2.2483.637-14.739-0.85641.154
189II_DC89DT90:DA203DG204_JJ-0.7980.9022.9578.452-4.88836.5031.9382.1742.578-7.637-13.20637.743
1101II_DC101DA102:DT191DG192_JJ0.8620.1713.3492.583.40140.685-0.141-0.9413.3984.876-3.69840.899
1107II_DC107DC108:DG185DG186_JJ-0.9091.9323.74-7.963-2.23135.4283.4570.1733.726-3.60512.8736.351
1108II_DC108DA109:DT184DG185_JJ0.351.7533.823.688-3.74444.832.671-0.0763.685-4.889-4.81645.122
1114II_DC114DA115:DT178DG179_JJ0.2720.3583.802-7.30418.64532.634-2.265-1.5173.38829.93111.72538.145
1116II_DC116DT117:DA176DG177_JJ0.142-0.2843.5250.2327.54939.299-1.343-0.183.41611.1-0.34139.99
1129II_DC129DT130:DA163DG164_JJ-0.8731.5773.13610.303-5.54840.3432.7232.1832.617-7.847-14.57241.938
1132II_DC132DA133:DT160DG161_JJ0.3810.6463.169-6.99914.29228.661-1.34-1.8962.98326.45212.95332.701
115II_DG15DC16:DG277DC278_JJ-0.5411.0692.4633.5283.55530.8481.471.5152.4926.628-6.57731.242
118II_DG18DA19:DT274DC275_JJ-0.909-0.6974.1118.21-2.18537.12-0.7262.6833.864-3.378-12.69438.046
131II_DG31DT32:DA261DC262_JJ-0.533-0.3172.465-3.1782.84323.774-1.4460.5052.466.8317.63524.148
133II_DG33DT34:DA259DC260_JJ0.262-0.8433.369-1.4554.29231.956-2.287-0.7333.2177.7472.62732.268
139II_DG39DG40:DC253DC254_JJ-1.3070.982.775-14.0347.64532.6310.540.23.212.70223.31536.238
140II_DG40DA41:DT252DC253_JJ1.103-0.4642.367-14.0253.83238.867-0.928-2.5551.8275.52920.23541.399
146II_DG46DC47:DG246DC247_JJ-0.5310.5242.7991.982-4.48735.0121.421.122.681-7.413-3.27435.343
158II_DG58DG59:DC234DC235_JJ1.3741.4193.018-1.024-3.5438.5962.527-2.1832.846-5.341.54538.765
159II_DG59DC60:DG233DC234_JJ-0.3320.3973.489-2.17413.51933.857-1.4230.23.41122.1243.55836.446
163II_DG63DT64:DA229DC230_JJ-0.44-0.9263.044-1.9285.82830.718-2.7160.4852.84610.8663.59431.311
168II_DG68DC69:DG224DC225_JJ-0.8860.554.1790.539-7.55238.1411.9861.4153.99-11.419-0.81538.857
171II_DG71DA72:DT221DC222_JJ-0.6870.413.276-8.86415.07933.977-1.397-0.1373.24523.93814.07238.097
178II_DG78DC79:DG214DC215_JJ-1.1151.1793.649-1.154-8.43840.2822.6711.4513.375-12.091.65341.136
181II_DG81DA82:DT211DC212_JJ-0.88-0.2143.426-7.00111.29932.344-2.1860.3353.28619.29811.95734.901
187II_DG87DC88:DG205DC206_JJ-1.450.473.7993.934-21.00541.9062.5492.1913.102-27.342-5.12146.821
194II_DG94DA95:DT198DC199_JJ-0.3850.3973.264-4.4459.49530.871-0.991-0.1083.26317.2258.06332.562
197II_DG97DG98:DC195DC196_JJ0.9250.5423.4130.3085.77337.6480.057-1.3773.4638.882-0.47438.073
198II_DG98DA99:DT194DC195_JJ-1.9890.6833.457-5.38-9.40938.4182.172.2493.44-13.9637.98439.862
1100II_DG100DC101:DG192DC193_JJ-1.20.2023.594-2.2340.97835.8630.1721.5913.6631.5863.62335.943
1103II_DG103DT104:DA189DC190_JJ-0.28-0.8863.037-3.0864.2628.27-2.658-0.0692.8888.6286.2528.746
1121II_DG121DG122:DC171DC172_JJ0.1180.1693.6153.6470.32439.2050.2090.3033.6120.482-5.42139.369
1122II_DG122DT123:DA170DC171_JJ0.11-0.3793.03313.562-7.80432.1740.4581.692.865-13.155-22.86135.687
1125II_DG125DA126:DT167DC168_JJ-0.679-0.5684.454-8.906-3.65841.459-0.267-0.3194.531-5.08512.3842.515
1131II_DG131DC132:DG161DC162_JJ-0.2052.0092.882-2.626-12.59444.843.3940.0812.277-16.123.36146.558
1134II_DG134DG135:DC158DC159_JJ-0.331-1.0173.5252.48410.55330.75-3.7021.0352.98719.169-4.51232.562
1135II_DG135DT136:DA157DC158_JJ0.5930.6463.2612.2920.7431.621.046-0.6613.3081.355-4.19831.709
1137II_DG137DG138:DC155DC156_JJ-0.2080.0653.434-1.67.68134.725-1.0740.0953.37812.672.63935.574
1138II_DG138DA139:DT154DC155_JJ-0.709-0.0732.915-6.05-3.0335.4220.2730.3642.988-4.9249.83236.042
1144II_DG144DA145:DT148DC149_JJ-0.0490.0283.84710.77612.73436.949-1.6511.5033.52518.953-16.03840.42
12II_DT2DC3:DG290DA291_JJ0.6270.723.544-0.8052.67134.7450.76-1.183.5724.4631.34634.854
16II_DT6DA7:DT286DA287_JJ0.008-0.0463.4112.694-1.84835.8930.20.3863.401-2.991-4.3636.037
18II_DT8DC9:DG284DA285_JJ0.5420.1793.6898.2185.50436.008-0.5590.4053.7068.703-12.99437.298
114II_DT14DG15:DC278DA279_JJ0.3212.8433.332-1.189-6.3248.6683.884-0.4732.955-7.631.43649.065
120II_DT20DT21:DA272DA273_JJ0.1340.1523.1290.464-0.48636.30.308-0.1533.128-0.779-0.74536.306
121II_DT21DC22:DG271DA272_JJ0.093-0.8223.608-6.2134.81940.927-1.71-0.8453.4456.8168.78841.643
123II_DT23DA24:DT269DA270_JJ0.3540.8033.615-1.6469.33435.805-0.16-0.8093.68214.8642.62136.998
132II_DT32DG33:DC260DA261_JJ0.3590.4973.425.48611.00531.782-1.0510.3353.41519.22-9.58134.02
134II_DT34DA35:DT258DA259_JJ-0.298-0.2373.8340.5774.31537.44-1.0190.5483.7796.694-0.89537.684
136II_DT36DT37:DA256DA257_JJ-0.379-0.6363.857-5.132.42234.268-1.503-0.2933.824.0768.63234.72
137II_DT37DT38:DA255DA256_JJ-1.0210.1332.978-0.612-13.03540.4391.3911.3552.82-18.290.85842.408
138II_DT38DG39:DC254DA255_JJ1.3542.0833.3215.135-1.76333.7813.829-1.4683.374-3.01-8.76734.202
145II_DT45DG46:DC247DA248_JJ0.9362.5253.19710.859-5.3843.1563.791-0.273.016-7.147-14.42744.747
148II_DT48DC49:DG244DA245_JJ0.5220.6453.0081.9953.92237.6080.524-0.5653.086.059-3.08137.856
152II_DT52DC53:DG240DA241_JJ0.6020.2733.4125.16213.81427.528-2.345-0.0553.23926.737-9.9931.161
162II_DT62DG63:DC230DA231_JJ0.1121.0433.443.6715.05434.430.9140.4093.5458.452-6.13934.975
164II_DT64DT65:DA228DA229_JJ0.0890.2413.0854.4189.36833.571-0.9430.4863.02915.759-7.43235.089
165II_DT65DC66:DG227DA228_JJ1.1860.5113.3012.8083.09234.1030.367-1.5553.4165.247-4.76634.35
170II_DT70DG71:DC222DA223_JJ0.9080.9113.3669.37914.61629.507-1.0870.1473.54626.049-16.71534.14
174II_DT74DT75:DA218DA219_JJ0.369-0.4842.8639.74410.12832.957-2.0650.6272.61116.926-16.28535.752
175II_DT75DC76:DG217DA218_JJ0.0040.9423.37-3.94410.45429.545-0.37-0.83.46619.6387.40831.543
180II_DT80DG81:DC212DA213_JJ-0.1050.7943.2890.26611.32734.977-0.3580.2053.37518.263-0.42936.711
186II_DT86DG87:DC206DA207_JJ1.1050.5083.125-3.056-1.45432.5041.139-2.462.987-2.5895.44232.675
190II_DT90DT91:DA202DA203_JJ0.5220.0733.2611.6775.91736.365-0.689-0.5983.2539.399-2.66436.865
191II_DT91DT92:DA201DA202_JJ0.290.5323.3773.01212.10832.851-1.0560.0013.37120.511-5.10335.079
192II_DT92DT93:DA200DA201_JJ-0.2090.2843.4411.26815.56424.866-3.0730.713.06932.386-2.63829.297
193II_DT93DG94:DC199DA200_JJ0.456-0.0953.8-0.4819.2925.201-4.314-0.942.97637.9160.94331.645
196II_DT96DG97:DC196DA197_JJ0.1840.7323.3760.4183.03836.6140.73-0.2333.4264.825-0.66536.738
1104II_DT104DT105:DA188DA189_JJ0.001-0.43.355-3.1686.68229.217-2.153-0.6573.1712.9866.15630.119
1105II_DT105DT106:DA187DA188_JJ0.319-0.7433.0634.6692.40937.541-1.4330.0683.0283.721-7.21137.893
1106II_DT106DC107:DG186DA187_JJ1.6780.892.86220.2874.68437.3910.741-0.2123.3896.708-29.05542.616
1112II_DT112DA113:DT180DA181_JJ-0.029-0.5593.094-9.4734.37234.338-1.497-1.2292.917.20215.60535.843
1117II_DT117DT118:DA175DA176_JJ0.195-0.1493.1991.157-3.14438.4290.155-0.1563.205-4.765-1.75438.569
1118II_DT118DT119:DA174DA175_JJ-0.439-0.1873.157-1.792-8.55635.8470.8360.4573.136-13.6522.8636.864
1119II_DT119DT120:DA173DA174_JJ0.3880.3633.0169.752-18.38640.7411.9580.2892.652-24.573-13.03345.547
1120II_DT120DG121:DC172DA173_JJ0.9341.4652.927-9.022-2.61140.5622.299-2.132.575-3.70612.80741.59
1123II_DT123DA124:DT169DA170_JJ-0.157-0.8884.538-0.50424.14730.361-5.2540.1563.05439.240.8238.618
1128II_DT128DC129:DG164DA165_JJ-0.487-0.5712.8822.551-9.32136.3570.2051.0552.896-14.623-4.00137.577
1130II_DT130DG131:DC162DA163_JJ-0.051.2523.249-4.7110.67833.7080.411-0.643.45117.7677.83635.615
1136II_DT136DG137:DC156DA157_JJ0.022-0.1453.2683.714.05732.541-2.2780.5012.94523.669-6.23135.56
1140II_DT140DA141:DT152DA153_JJ-0.538-0.043.477-2.4871.86633.586-0.3930.4963.4993.2214.29333.725
1142II_DT142DT143:DA150DA151_JJ0.3320.2133.0551.3374.85229.505-0.534-0.3823.0629.44-2.60129.922
1143II_DT143DG144:DC149DA150_JJ-0.0180.1023.549-6.1925.2136.527-0.588-0.8593.4878.1899.73237.383

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.