A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: NA1147  PDB ID: 3AZL 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11I_DA1:DT292_J0.198-0.126-0.709-20.71322.2153.866
14I_DA4:DT289_J0.2260.078-0.0699.032-12.5680.781
15I_DA5:DT288_J0.074-0.046-0.364-2.097-13.3150.215
17I_DA7:DT286_J0.2330.029-0.247-2.063-12.5561.739
111I_DA11:DT282_J0.075-0.047-0.83-1.939-4.448-9.938
117I_DA17:DT276_J0.001-0.1110.69211.475-0.2434.62
119I_DA19:DT274_J0.1230.079-0.0093.052-10.6150.539
124I_DA24:DT269_J-0.053-0.129-0.256-9.858-19.9655.603
127I_DA27:DT266_J0.2530.0060.21210.087-15.659-0.415
128I_DA28:DT265_J0.11-0.0730.16314.2572.962-1.768
129I_DA29:DT264_J0.1180.080.152.019-11.955-2.9
130I_DA30:DT263_J0.09-0.016-0.118-12.403-10.6171.748
135I_DA35:DT258_J0.086-0.023-0.423-22.1572.6151.393
141I_DA41:DT252_J-0.009-0.2290.1366.388-8.1427.729
142I_DA42:DT251_J-0.0280.072-0.059-9.176-8.441-2.858
143I_DA43:DT250_J0.062-0.183-0.3261.157-6.0195.068
151I_DA51:DT242_J0.036-0.1240.19-10.09-16.4843.985
154I_DA54:DT239_J-0.103-0.056-0.807-14.035-18.6344.606
155I_DA55:DT238_J-0.086-0.081-0.4825.29-20.1660.659
156I_DA56:DT237_J0.023-0.0480.00212.02-28.638-3.451
157I_DA57:DT236_J0.159-0.0490.73620.246-26.084-5.67
161I_DA61:DT232_J0.131-0.0590.324-7.903-3.742-0.289
167I_DA67:DT226_J0.046-0.0590.339-2.014-27.347-4.337
172I_DA72:DT221_J-0.072-0.1030.178-1.691-3.8913.791
173I_DA73:DT220_J0.178-0.097-0.1133.403-8.3871.853
177I_DA77:DT216_J0.2160.054-0.2063.737-30.249-6.596
182I_DA82:DT211_J-0.012-0.0010.0192.113-11.867-1.92
183I_DA83:DT210_J-0.025-0.232-0.882-2.113-6.5563.533
185I_DA85:DT208_J0.0680.0790.165-3.034-9.929-0.123
195I_DA95:DT198_J-0.005-0.075-0.665-7.352-4.181-0.817
199I_DA99:DT194_J0.184-0.075-0.102-3.419-30.012-7.018
1102I_DA102:DT191_J-0.231-0.085-0.344-10.468-6.784-0.037
1109I_DA109:DT184_J-0.037-0.1090.2214.604-7.769-1.162
1110I_DA110:DT183_J0.051-0.1380.1227.066-9.82.818
1111I_DA111:DT182_J0.06-0.0940.32910.322.1882.196
1113I_DA113:DT180_J-0.011-0.332-1.112-2.36-18.5555.606
1115I_DA115:DT178_J0.007-0.2050.0331.252-7.7666.672
1124I_DA124:DT169_J0.0650.057-0.5917.131-21.943-6.091
1126I_DA126:DT167_J0.08-0.101-0.214-23.284-10.6260.056
1127I_DA127:DT166_J0.088-0.1370.036-14.263-3.0914.392
1133I_DA133:DT160_J0.1430.048-0.2397.86-16.654-0.377
1139I_DA139:DT154_J0.4540.0010.2877.818-6.453-2.851
1141I_DA141:DT152_J0.48-0.0680.3114.248-13.39-4.577
1145I_DA145:DT148_J0.086-0.378-0.849-5.426.5773.158
13I_DC3:DG290_J0.030.055-0.5556.594-9.1610.598
19I_DC9:DG284_J-0.081-0.07-0.623-2.503-14.7134.257
110I_DC10:DG283_J-0.119-0.083-0.558-0.679-0.564-2.479
112I_DC12:DG281_J-0.037-0.088-0.6277.201-6.946-3.857
113I_DC13:DG280_J0.0020.0570.179-15.849-4.5970.681
116I_DC16:DG277_J-0.086-0.1730.92-6.394-12.984-7.377
122I_DC22:DG271_J0.086-0.0440.015-11.714-13.654-1.194
125I_DC25:DG268_J0.026-0.0991.213-20.7532.8591.202
126I_DC26:DG267_J-0.01-0.0620.6143.412-13.071-1.57
144I_DC44:DG249_J0.056-0.2561.154-10.7061.9061.401
147I_DC47:DG246_J-0.0050.0110.2131.093-24.730.883
149I_DC49:DG244_J0.075-0.003-0.252-8.311-17.9372.729
150I_DC50:DG243_J-0.020.0350.133-8.805-7.15-1.479
153I_DC53:DG240_J0.205-0.305-0.8980.629-22.84310.274
160I_DC60:DG233_J0.090.018-0.045-8.362-2.2991.181
166I_DC66:DG227_J-0.075-0.026-0.80216.871-2.137-2.549
169I_DC69:DG224_J0.014-0.0130.523-4.995-17.857-2.955
176I_DC76:DG217_J0.131-0.0310.142-0.767-3.2270.495
179I_DC79:DG214_J0.021-0.0950.346-1.27-29.338-1.368
184I_DC84:DG209_J0.063-0.023-0.4126.962-6.0592.638
188I_DC88:DG205_J0.093-0.0330.4344.42-31.558-4.403
189I_DC89:DG204_J0.019-0.1320.983-16.6730.271-5.026
1101I_DC101:DG192_J0.134-0.0110.4171.494-23.5890.961
1107I_DC107:DG186_J0.284-0.0190.399-13.4839.0883.575
1108I_DC108:DG185_J-0.093-0.2060.9051.463-12.2-7.206
1114I_DC114:DG179_J0.084-0.167-0.7282.555-11.883.166
1116I_DC116:DG177_J0.195-0.103-0.80924.674-20.8050.219
1129I_DC129:DG164_J0.036-0.0860.943-5.271-3.022-0.99
1132I_DC132:DG161_J-0.108-0.001-0.3357.951-24.6570.762
115I_DG15:DC278_J-0.156-0.0080.1341.029-13.323-1.417
118I_DG18:DC275_J-0.1940.0760.59515.745-7.7344.518
131I_DG31:DC262_J-0.167-0.089-0.758-23.5541.266-1.213
133I_DG33:DC260_J-0.185-0.116-0.47-2.875-2.967-0.066
139I_DG39:DC254_J-0.0760.004-0.584-7.785.519-1.406
140I_DG40:DC253_J-0.134-0.0170.3911.862-15.9010.66
146I_DG46:DC247_J-0.514-0.1040.045-1.416-11.8945.574
158I_DG58:DC235_J-0.207-0.1480.255-7.742-14.785-2.522
159I_DG59:DC234_J-0.236-0.0050.2964.439-0.5852.367
163I_DG63:DC230_J-0.19-0.183-0.881-17.865-13.3464.198
168I_DG68:DC225_J-0.19-0.2040.2151.3560.7820.163
171I_DG71:DC222_J-0.2760.057-0.154-2.206-7.6675.147
178I_DG78:DC215_J-0.0990.0150.19710.343.455-0.335
181I_DG81:DC212_J-0.325-0.022-0.274-8.358-0.2624.033
187I_DG87:DC206_J-0.26-0.07-0.141-0.6878.6633.815
194I_DG94:DC199_J0.006-0.16-0.863-7.939-8.4860.673
197I_DG97:DC196_J-0.0140.13-0.0176.297-11.781-1.97
198I_DG98:DC195_J-0.089-0.063-0.0573.1177.4861.409
1100I_DG100:DC193_J-0.116-0.153-0.067-3.969-20.8943.552
1103I_DG103:DC190_J-0.004-0.057-0.341-2.236-9.3891.021
1121I_DG121:DC172_J-0.011-0.081.17610.074-2.652-3.276
1122I_DG122:DC171_J0.003-0.0570.53420.055-6.273-8.746
1125I_DG125:DC168_J0.022-0.277-1.048-5.844-13.1450.145
1131I_DG131:DC162_J0.089-0.047-0.022-2.673-14.415-0.543
1134I_DG134:DC159_J-0.114-0.22-0.4927.255-10.4812.793
1135I_DG135:DC158_J0.084-0.309-0.937-11.666-11.861-0.512
1137I_DG137:DC156_J-0.0210.096-0.4030.325-12.644.622
1138I_DG138:DC155_J-0.223-0.072-0.14-1.64-10.0842.598
1144I_DG144:DC149_J-0.053-0.028-0.03513.73-1.610.846
12I_DT2:DA291_J-0.1640.055-0.045-5.528-4.818-6.465
16I_DT6:DA287_J0.056-0.25-0.28211.565-3.7445.601
18I_DT8:DA285_J0.121-0.158-0.2344.598-8.6533.496
114I_DT14:DA279_J0.061-0.063-0.5574.357-9.964-5.677
120I_DT20:DA273_J0.016-0.027-0.6221.833-23.1060.263
121I_DT21:DA272_J0.112-0.154-0.714-0.184-21.1032.878
123I_DT23:DA270_J0.019-0.0770.465-11.73-12.505-0.507
132I_DT32:DA261_J0.044-0.156-0.824.318-14.4240.515
134I_DT34:DA259_J-0.135-0.068-0.386-2.846-10.7880.917
136I_DT36:DA257_J-0.139-0.0670.528-12.55-4.276-2.642
137I_DT37:DA256_J-0.219-0.0831.011-14.802-3.109-2.204
138I_DT38:DA255_J-0.3640.0440.507-12.008-19.304-9.297
145I_DT45:DA248_J-0.031-0.1440.6240.335-15.6780.156
148I_DT48:DA245_J-0.051-0.006-0.259-7.372-15.2220.194
152I_DT52:DA241_J0.018-0.12-0.494-4.189-6.787-3.098
162I_DT62:DA231_J-0.126-0.0140.091-2.671-8.512-1.869
164I_DT64:DA229_J-0.129-0.0590.239-6.326-14.973-2.282
165I_DT65:DA228_J-0.094-0.065-0.4767.101-11.3650.57
170I_DT70:DA223_J-0.264-0.026-0.102-8.296-0.528-5.569
174I_DT74:DA219_J0.0640.006-0.2452.508-10.8040.263
175I_DT75:DA218_J-0.02-0.014-0.3150.609-15.6521.424
180I_DT80:DA213_J-0.124-0.041-0.28-8.581-4.254-4.034
186I_DT86:DA207_J-0.0860.022-0.4986.449-9.9661.444
190I_DT90:DA203_J-0.3540.0470.236-10.034-24.517-5.073
191I_DT91:DA202_J0.101-0.043-0.2353.41-12.6353.578
192I_DT92:DA201_J-0.0420.002-0.278-1.707-8.9560.199
193I_DT93:DA200_J0.143-0.262-0.716-2.992-10.4571.343
196I_DT96:DA197_J-0.06-0.015-0.1963.468-6.56-1.156
1104I_DT104:DA189_J-0.104-0.068-0.2820.015-11.2221.217
1105I_DT105:DA188_J0.046-0.1810.618-3.007-1.141-2.452
1106I_DT106:DA187_J-0.112-0.0430.13-5.504-24.360.881
1112I_DT112:DA181_J-0.140.006-0.24110.5040.646-2.469
1117I_DT117:DA176_J-0.1260.1160.01-2.157-18.207-2.116
1118I_DT118:DA175_J-0.0630.0480.356-6.063-3.551-3.41
1119I_DT119:DA174_J-0.25-0.0030.305-13.681-26.388-7.646
1120I_DT120:DA173_J-0.022-0.26-0.127-12.05-35.76210.53
1123I_DT123:DA170_J-0.0950.235-1.33847.299-8.388-14.04
1128I_DT128:DA165_J-0.193-0.2270.938-8.3-16.427-0.366
1130I_DT130:DA163_J-0.22-0.1330.232-13.612-17.853-1.771
1136I_DT136:DA157_J0.235-0.323-0.69815.897-11.7458.564
1140I_DT140:DA153_J-0.388-0.1960.063-0.139-5.4240.738
1142I_DT142:DA151_J0.061-0.161-0.2174.174-8.882.819
1143I_DT143:DA150_J-0.106-0.3-0.5544.033-5.1683.659

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.