A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: NA1147  PDB ID: 3AZL 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11II_DA1DT2:DA291DT292_JJ-1.358-0.4943.073-3.466-7.10726.9050.6351.9973.24-14.8717.25228.022
14II_DA4DA5:DT288DT289_JJ-0.270.0873.6121.063.84734.559-0.5030.6313.5916.449-1.77734.782
15II_DA5DT6:DA287DT288_JJ0.779-0.32.9161.242-0.07231.498-0.541-1.2262.944-0.133-2.28731.522
17II_DA7DT8:DA285DT286_JJ0.185-0.673.104-0.562-3.69635.058-0.58-0.3863.152-6.1150.9335.251
111II_DA11DC12:DG281DT282_JJ-0.207-0.6353.108-5.4836.51129.513-2.399-0.622.89612.45810.49130.69
117II_DA17DG18:DC275DT276_JJ0.782-0.3883.0911.3085.18531.161-1.616-1.2083.0189.563-2.41231.606
119II_DA19DT20:DA273DT274_JJ-0.187-0.3493.1734.283-1.76936.458-0.320.8633.144-2.814-6.81136.741
124II_DA24DC25:DG268DT269_JJ-0.1620.9733.653-11.0634.51637.2570.833-1.2823.6436.85516.79539.061
127II_DA27DA28:DT265DT266_JJ0.111-0.3433.156-5.6794.37930.251-1.442-1.2483.0088.24610.69431.071
128II_DA28DA29:DT264DT265_JJ-0.5990.1273.695-2.798-9.67642.5441.2220.5013.614-13.1153.79343.666
129II_DA29DA30:DT263DT264_JJ-0.122-0.4363.633-0.6621.89135.915-1.0050.0943.6073.0641.07235.969
130II_DA30DG31:DC262DT263_JJ-0.275-0.2093.8173.643-0.72737.862-0.2140.963.778-1.117-5.59838.038
135II_DA35DT36:DA257DT258_JJ-0.297-0.8353.133-5.728-6.55336.079-0.447-0.2913.238-10.3949.08737.08
141II_DA41DA42:DT251DT252_JJ-0.9350.5493.859-2.96517.32733.84-1.8910.9683.76227.584.7238.015
142II_DA42DA43:DT250DT251_JJ0.4040.1813.1124.3822.84133.912-0.121-0.0243.1434.836-7.45734.3
143II_DA43DC44:DG249DT250_JJ0.096-0.8753.829-10.4817.83828.809-3.259-2.3843.25614.82519.82431.585
151II_DA51DT52:DA241DT242_JJ-0.49-0.243.260.4994.71629.986-1.3971.0353.1789.043-0.95830.35
154II_DA54DA55:DT238DT239_JJ-0.4180.7842.797-3.485.71130.4880.4970.1912.92110.76.5231.196
155II_DA55DA56:DT237DT238_JJ-0.2140.3723.069-0.0416.16234.192-0.2720.3533.08810.3760.06934.726
156II_DA56DA57:DT236DT237_JJ0.6930.643.102-0.081-6.89239.8971.646-1.0112.954-10.010.11840.464
157II_DA57DG58:DC235DT236_JJ1.0991.7054.1625.114-15.3441.7583.945-0.883.466-20.616-6.87344.649
161II_DA61DT62:DA231DT232_JJ-0.14-1.0043.0722.4922.50333.204-2.1320.6272.9724.366-4.34633.386
167II_DA67DG68:DC225DT226_JJ0.8521.0473.297-1.06-7.05933.3372.879-1.6182.991-12.1331.82234.071
172II_DA72DA73:DT220DT221_JJ-0.04-0.6613.3191.9383.27133.319-1.6870.3893.2345.682-3.36733.529
173II_DA73DT74:DA219DT220_JJ0.189-0.7253.2672.56211.18131.122-3.0930.0862.8520.007-4.58533.119
177II_DA77DG78:DC215DT216_JJ1.50.6652.974-0.932-3.71533.3751.693-2.7322.844-6.4421.61633.588
182II_DA82DA83:DT210DT211_JJ0.30.2173.4964.8718.61431.874-1.1770.3573.44415.232-8.61433.337
183II_DA83DC84:DG209DT210_JJ0.236-0.5293.12-1.8964.86134.081-1.604-0.6763.0018.2333.21134.466
185II_DA85DT86:DA207DT208_JJ0.169-0.6332.9686.5186.30430.813-2.1590.7422.76511.554-11.94632.088
195II_DA95DT96:DA197DT198_JJ-0.332-0.613.153-1.1555.73828.036-2.4650.4232.98311.6842.35228.628
199II_DA99DG100:DC193DT194_JJ1.3740.5983.2213.3523.67836.0730.44-1.7273.3735.905-5.38136.403
1102II_DA102DG103:DC190DT191_JJ-0.689-0.0013.198-3.1295.88534.007-0.8960.6823.2029.9435.28734.635
1109II_DA109DA110:DT183DT184_JJ0.2660.1323.1621.2683.65130.614-0.441-0.2613.1646.88-2.3930.851
1110II_DA110DA111:DT182DT183_JJ-0.243-0.3642.982-4.255-3.11237.389-0.193-0.1293.01-4.8256.59737.745
1111II_DA111DT112:DA181DT182_JJ-0.377-0.9963.4041.5-5.09134.02-0.8420.8853.492-8.635-2.54534.42
1113II_DA113DC114:DG179DT180_JJ-0.113-0.8773.173-5.12310.59829.605-3.403-0.6652.6919.7849.56431.81
1115II_DA115DC116:DG177DT178_JJ0.248-0.653.098.62-7.32531.8530.0430.9413.12-12.85-15.12233.753
1124II_DA124DG125:DC168DT169_JJ0.327-0.0713.97-0.52610.9233.55-2.084-0.6353.75918.3230.88235.238
1126II_DA126DA127:DT166DT167_JJ-0.253-0.0752.9970.294-1.98937.5640.1210.4272.994-3.087-0.45737.616
1127II_DA127DT128:DA165DT166_JJ0.066-0.9783.6032.903-14.40233.0350.8050.3733.693-23.91-4.81936.071
1133II_DA133DG134:DC159DT160_JJ0.016-0.4583.3070.32511.34930.466-2.7890.0282.95220.715-0.59432.466
1139II_DA139DT140:DA153DT154_JJ0.124-1.4823.598-0.887-10.65336.168-0.685-0.3263.863-16.7151.39237.664
1141II_DA141DT142:DA151DT152_JJ0.635-0.4373.2525.2863.05734.231-1.201-0.2543.2615.144-8.89334.755
13II_DC3DA4:DT289DG290_JJ-0.440.6783.328-3.6496.06234.5070.180.1623.42110.0886.07335.203
19II_DC9DC10:DG283DG284_JJ0.374-0.2593.493-0.918.90133.227-1.909-0.7843.30515.2261.55634.378
110II_DC10DA11:DT282DG283_JJ-0.6310.9623.3430.4089.36432.7480.0571.1483.47116.198-0.70534.028
112II_DC12DC13:DG280DG281_JJ0.191-1.0893.869-3.28920.27132.275-4.488-0.752.71532.6685.338.107
113II_DC13DT14:DA279DG280_JJ-0.8540.6222.9038.33212.76925.284-1.2233.2752.52626.337-17.18429.461
116II_DC16DA17:DT276DG277_JJ1.4772.0723.0437.574-24.09544.5993.798-1.2821.964-29.154-9.16450.935
122II_DC22DT23:DA270DG271_JJ-0.165-0.6733.37-0.22510.31427.202-3.5970.2792.92620.9960.45829.058
125II_DC25DC26:DG267DG268_JJ-0.0950.052.7974.683-5.47234.5380.7750.7492.722-9.093-7.78335.259
126II_DC26DA27:DT266DG267_JJ0.1912.5223.2964.616-17.5449.4313.8810.0552.344-20.207-5.31752.456
144II_DC44DT45:DA248DG249_JJ-0.102-0.2463.0395.706-2.37934.848-0.0790.952.995-3.933-9.43535.375
147II_DC47DT48:DA245DG246_JJ0.4891.0073.4293.9577.47136.2540.498-0.1943.59111.81-6.25537.194
149II_DC49DC50:DG243DG244_JJ-0.5350.523.214-5.9887.93935.043-0.2890.013.29412.8679.70536.384
150II_DC50DA51:DT242DG243_JJ-0.394-0.263.365-4.3627.76829.464-2.055-0.1363.21814.8518.33930.752
153II_DC53DA54:DT239DG240_JJ-0.2270.6363.696-1.62826.88119.053-4.6380.0522.68755.2453.34732.886
160II_DC60DA61:DT232DG233_JJ-0.6740.13.368-6.6811.74735.786-0.0950.1053.4352.8110.74936.425
166II_DC66DA67:DT226DG227_JJ-0.9181.4913.881-6.2031.13842.1061.9140.5044.0081.5748.57642.555
169II_DC69DT70:DA223DG224_JJ0.4211.1793.4656.007-8.89839.8752.6650.0713.17-12.768-8.6241.238
176II_DC76DA77:DT216DG217_JJ-0.9642.0093.2741.249-9.07745.0223.3151.3372.813-11.71-1.61145.898
179II_DC79DT80:DA213DG214_JJ1.1491.4913.4575.419-2.77342.9252.306-0.9943.472-3.767-7.36143.334
184II_DC84DA85:DT208DG209_JJ-0.2690.4483.688-1.6499.45732.914-0.9520.1593.68216.2642.83534.248
188II_DC88DC89:DG204DG205_JJ0.8831.2514.126-3.86-4.83739.9592.478-1.8113.857-7.0265.60840.416
189II_DC89DT90:DA203DG204_JJ-0.8361.0993.0562.998-10.17439.2552.5851.52.634-14.817-4.36740.608
1101II_DC101DA102:DT191DG192_JJ0.8810.6213.576.43.58738.810.445-0.4583.7045.34-9.52839.471
1107II_DC107DC108:DG185DG186_JJ-1.2660.973.276-2.273-8.80927.8753.772.0262.931-17.6994.56629.294
1108II_DC108DA109:DT184DG185_JJ0.8551.973.3110.872-13.95247.2333.285-0.2542.781-16.743-13.04650.258
1114II_DC114DA115:DT178DG179_JJ0.0630.6633.244-5.89312.39232.975-0.77-0.9833.22220.7499.86735.643
1116II_DC116DT117:DA176DG177_JJ0.1730.0393.854-0.93411.24537.484-1.54-0.3913.70817.0321.41539.087
1129II_DC129DT130:DA163DG164_JJ-0.8522.1733.5981.312-9.10645.633.5461.1943.109-11.602-1.67246.5
1132II_DC132DA133:DT160DG161_JJ0.6131.0873.441-2.72612.62130.247-0.487-1.6053.53522.9194.94932.829
115II_DG15DC16:DG277DC278_JJ-1.2070.8463.592-7.3554.48235.3050.6360.7533.8347.25811.9136.308
118II_DG18DA19:DT274DC275_JJ-0.344-0.0523.6642.332-1.79639.5540.1570.8113.638-2.65-3.44139.659
131II_DG31DT32:DA261DC262_JJ0.089-0.0572.7081.9479.89624.234-2.3380.2392.49222.371-4.40126.22
133II_DG33DT34:DA259DC260_JJ0.258-1.0453.342.6212.57232.649-2.294-0.0013.264.556-4.64332.849
139II_DG39DG40:DC253DC254_JJ-0.7621.0572.835-6.6855.99838.1210.9220.4063.0479.0310.06539.127
140II_DG40DA41:DT252DC253_JJ0.117-0.6063.2121.6359.30729.702-2.830.0812.89617.603-3.09231.137
146II_DG46DC47:DG246DC247_JJ-1.2070.843.313-1.743-0.50338.6991.3291.6033.351-0.7582.62838.739
158II_DG58DG59:DC234DC235_JJ1.1221.0173.0671.736-2.4337.2541.887-1.5373.044-3.796-2.71237.369
159II_DG59DC60:DG233DC234_JJ-0.358-0.1083.6981.1174.68736.363-0.8950.7413.6447.47-1.78136.67
163II_DG63DT64:DA229DC230_JJ-0.895-0.2773.076-11.8765.29128.814-1.482-0.5383.09910.01522.47731.554
168II_DG68DC69:DG224DC225_JJ-0.8120.5793.665-2.559-6.90241.841.580.8313.571-9.5753.5542.454
171II_DG71DA72:DT221DC222_JJ-0.7150.2433.175-4.5426.86335.159-0.5710.5173.22811.1737.39536.079
178II_DG78DC79:DG214DC215_JJ-1.1051.3543.8040.945-7.37139.4422.9191.7323.48-10.805-1.38540.108
181II_DG81DA82:DT211DC212_JJ-0.840.1733.18-3.6785.91332.364-0.6860.8583.23410.4576.50633.085
187II_DG87DC88:DG205DC206_JJ-1.5890.7343.632-2.408-18.52342.5452.6461.7983.151-24.1813.14346.29
194II_DG94DA95:DT198DC199_JJ0.023-0.1393.176-1.9019.5130.33-1.934-0.3772.99117.6193.52231.808
197II_DG97DG98:DC195DC196_JJ1.2530.3643.2442.0035.03835.609-0.134-1.743.3268.179-3.25336.006
198II_DG98DA99:DT194DC195_JJ-1.9021.1223.645-1.865-4.89240.0492.2352.5233.57-7.1062.7140.375
1100II_DG100DC101:DG192DC193_JJ-1.030.633.226-12.775-8.75838.2451.8630.0553.186-12.74818.59541.153
1103II_DG103DT104:DA189DC190_JJ-0.439-0.8963.233-0.6999.57827.439-3.780.7312.77919.4521.41929.04
1121II_DG121DG122:DC171DC172_JJ-0.3590.3393.2551.186-1.29139.030.6610.6793.231-1.932-1.77439.068
1122II_DG122DT123:DA170DC171_JJ0.573-0.7033.1839.545-11.4831.8180.6220.5373.272-19.646-16.33335.064
1125II_DG125DA126:DT167DC168_JJ-0.341-0.9553.789-7.71-2.28740.644-1.064-0.4883.834-3.25410.9741.399
1131II_DG131DC132:DG161DC162_JJ-0.6061.9222.996-1.389-11.95344.733.3110.6712.449-15.3791.78646.24
1134II_DG134DG135:DC158DC159_JJ-0.43-0.3083.7581.25917.26632.954-3.0960.8663.19528.149-2.05237.112
1135II_DG135DT136:DA157DC158_JJ0.530.9642.7423.1413.38530.0631.254-0.4672.876.477-6.01130.408
1137II_DG137DG138:DC155DC156_JJ-0.28-0.2263.155-4.3363.86634.806-0.927-0.163.1246.4077.18735.272
1138II_DG138DA139:DT154DC155_JJ-0.686-0.2193.036-3.8861.06135.349-0.5040.5923.0841.746.37435.571
1144II_DG144DA145:DT148DC149_JJ0.921-1.313.825.3878.64536.883-3.247-0.633.53113.354-8.32138.217
12II_DT2DC3:DG290DA291_JJ0.6610.2493.1417.944-1.06639.1650.485-0.0723.202-1.571-11.70239.945
16II_DT6DA7:DT286DA287_JJ-0.588-0.2043.6570.4970.03634.686-0.3481.0713.6480.06-0.83434.689
18II_DT8DC9:DG284DA285_JJ0.356-0.1573.3236.5790.43539.637-0.280.2493.3360.636-9.62140.159
114II_DT14DG15:DC278DA279_JJ0.4292.7673.312-3.299-9.80848.9133.942-0.7312.712-11.6933.93349.929
120II_DT20DT21:DA272DA273_JJ-0.0310.1633.1351.3941.34135.7150.080.2433.1352.184-2.27235.765
121II_DT21DC22:DG271DA272_JJ-0.08-0.1933.562-3.0333.07442.592-0.599-0.223.5384.2184.16342.8
123II_DT23DA24:DT269DA270_JJ0.90.7583.4758.3055.02435.2520.438-0.1623.6578.108-13.40236.523
132II_DT32DG33:DC260DA261_JJ-0.0550.5973.442-3.71616.67532.098-1.622-0.4873.33127.8336.20236.256
134II_DT34DA35:DT258DA259_JJ-0.116-0.013.677-1.6187.70737.976-1.077-0.0483.60911.692.45538.755
136II_DT36DT37:DA256DA257_JJ-0.266-0.4553.375-3.769-3.37634.491-0.224-0.1543.412-5.6556.31334.849
137II_DT37DT38:DA255DA256_JJ-0.9230.1683.1941.001-13.37139.3691.6161.4062.963-19.184-1.43641.504
138II_DT38DG39:DC254DA255_JJ1.6391.6843.3695.528-8.64334.1954.014-1.8683.086-14.304-9.14935.657
145II_DT45DG46:DC247DA248_JJ1.1651.523.1359.0741.74739.6941.99-0.6623.3722.531-13.14840.713
148II_DT48DC49:DG244DA245_JJ-0.6920.5413.261-6.62-2.68238.4771.1340.2313.287-4.0289.94139.11
152II_DT52DC53:DG240DA241_JJ1.0650.2643.185.5948.15830.856-0.984-0.9113.2814.861-10.19132.366
162II_DT62DG63:DC230DA231_JJ0.3680.8283.8927.64514.86935.062-1.0440.6253.91423.127-11.89138.731
164II_DT64DT65:DA228DA229_JJ0.1650.1052.8365.0833.78233.258-0.3530.4322.8246.533-8.78233.839
165II_DT65DC66:DG227DA228_JJ1.0180.3523.1294.6775.59533.225-0.281-1.0043.2539.641-8.05933.994
170II_DT70DG71:DC222DA223_JJ0.880.923.2491.25410.14130.346-0.248-1.363.40518.718-2.31531.982
174II_DT74DT75:DA218DA219_JJ0.224-0.0263.1443.60410.58332.887-1.6130.1583.00118.056-6.14834.686
175II_DT75DC76:DG217DA218_JJ-0.1940.1493.533-5.18710.75428.64-1.996-0.7353.35520.6429.95530.981
180II_DT80DG81:DC212DA213_JJ-0.2650.9193.251-2.78610.00835.0210.0320.0233.38816.1964.50936.483
186II_DT86DG87:DC206DA207_JJ0.9970.7543.495-3.3567.76532.498-0.072-2.3233.46113.595.87333.552
190II_DT90DT91:DA202DA203_JJ0.3930.0293.0370.802-0.7836.4320.147-0.5243.044-1.247-1.28236.449
191II_DT91DT92:DA201DA202_JJ0.2630.2573.5272.4089.4430.351-1.4170.0023.4617.473-4.45831.841
192II_DT92DT93:DA200DA201_JJ0.136-0.2323.4744.01716.96926.531-3.7210.5322.81732.848-7.77631.662
193II_DT93DG94:DC199DA200_JJ0.496-0.1293.7060.10616.90328.427-3.473-0.8543.14231.18-0.19532.984
196II_DT96DG97:DC196DA197_JJ0.0730.5953.370.597-0.15536.3860.975-0.0323.368-0.248-0.95636.391
1104II_DT104DT105:DA188DA189_JJ0.108-0.3073.565-5.4888.34431.725-2.042-1.1793.31614.8129.74133.222
1105II_DT105DT106:DA187DA188_JJ0.068-0.2193.1757.0084.70535.794-0.9690.8193.0817.527-11.21136.744
1106II_DT106DC107:DG186DA187_JJ1.3230.6753.7021.3431.84441.5110.728-1.7013.7672.599-1.89341.571
1112II_DT112DA113:DT180DA181_JJ-0.0290.0883.6678.32812.55635.306-1.6461.2243.41219.636-13.02338.293
1117II_DT117DT118:DA175DA176_JJ0.146-0.2593.526-2.139-1.25637.508-0.225-0.5273.519-1.953.32237.587
1118II_DT118DT119:DA174DA175_JJ-0.504-0.0233.25-0.8482.64839.304-0.3460.6473.2513.931.25939.398
1119II_DT119DT120:DA173DA174_JJ-0.0931.7743.1974.848-9.93842.5093.2420.5482.711-13.436-6.55443.859
1120II_DT120DG121:DC172DA173_JJ-0.3821.3452.85-20.62-6.90837.7612.408-1.2382.465-9.7529.10343.377
1123II_DT123DA124:DT169DA170_JJ0.4610.1744.3044.49725.52532.325-3.5110.0073.55838.979-6.86741.215
1128II_DT128DC129:DG164DA165_JJ-0.430.03.077-0.9234.82135.739-0.6430.5713.0617.811.49536.064
1130II_DT130DG131:DC162DA163_JJ0.1050.7383.042-3.3358.6129.529-0.22-0.8183.116.3946.3530.908
1136II_DT136DG137:DC156DA157_JJ0.1140.2423.63-3.94314.53230.481-2.22-0.9113.3625.766.9933.918
1140II_DT140DA141:DT152DA153_JJ-0.320.3793.1870.488-1.77236.2280.8490.583.161-2.847-0.78436.273
1142II_DT142DT143:DA150DA151_JJ0.5980.0583.2854.4174.99431.058-0.828-0.2673.3069.194-8.13231.748
1143II_DT143DG144:DC149DA150_JJ0.090.3493.204-7.6633.36135.4870.1-1.1893.1375.42112.36136.43

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.