A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: NA1148  PDB ID: 3AZM 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11I_DA1:DT292_J0.16-0.177-1.102-22.40313.512-8.432
14I_DA4:DT289_J0.059-0.148-0.854-0.304-18.5924.948
15I_DA5:DT288_J0.2330.0310.229.52-17.2041.665
17I_DA7:DT286_J0.4670.0580.5125.886-17.877-9.329
111I_DA11:DT282_J0.026-0.001-0.4463.06810.662-14.703
117I_DA17:DT276_J0.064-0.0460.4787.733-6.878-2.243
119I_DA19:DT274_J-0.111-0.075-0.699-15.093-28.0334.728
123I_DA24:DT269_J-0.06-0.0760.128-7.11-4.735-6.357
126I_DA27:DT266_J0.0840.053-0.339-15.273-31.383-8.228
127I_DA28:DT265_J0.156-0.1180.4144.971-13.3350.558
128I_DA29:DT264_J0.202-0.0040.096-5.876-13.549-10.018
129I_DA30:DT263_J0.077-0.2020.253-9.306-8.512.875
134I_DA35:DT258_J0.119-0.128-0.181-19.573-0.6640.62
140I_DA41:DT252_J0.199-0.1640.59420.728-8.279-4.374
141I_DA42:DT251_J0.035-0.0040.3726.9151.702-1.896
142I_DA43:DT250_J0.142-0.2070.046-3.45521.484-1.309
150I_DA51:DT242_J0.115-0.1910.95520.589-4.6642.983
153I_DA54:DT239_J0.1960.027-1.138-28.32110.304-10.993
154I_DA55:DT238_J-0.1210.026-0.51-13.218-18.293-7.974
155I_DA56:DT237_J0.2230.0290.21711.584-34.581-10.74
156I_DA57:DT236_J0.234-0.025-0.0147.809-26.058-2.784
160I_DA61:DT232_J0.171-0.6011.5971.055-4.8634.463
166I_DA67:DT226_J0.289-0.1190.78817.154-29.93-10.62
171I_DA72:DT221_J0.0630.0460.016-4.5081.804-2.408
172I_DA73:DT220_J0.123-0.2-0.7722.475-4.83-2.65
176I_DA77:DT216_J0.0030.0420.02-9.908-13.56-9.153
181I_DA82:DT211_J0.164-0.0180.2943.612-0.6181.021
182I_DA83:DT210_J0.204-0.1020.401-2.1675.6372.514
184I_DA85:DT208_J0.258-0.221-1.50314.362-29.3916.371
194I_DA95:DT198_J0.149-0.098-0.098-6.1262.5145.04
198I_DA99:DT194_J0.2660.0680.64913.078-21.541-9.247
1101I_DA102:DT191_J0.2790.032-0.2098.02-15.172-0.889
1108I_DA109:DT184_J-0.083-0.1260.62713.568-3.341-4.505
1109I_DA110:DT183_J-0.018-0.1250.419.952-0.098-2.732
1110I_DA111:DT182_J0.1170.0290.68713.5985.675-3.696
1112I_DA113:DT180_J-0.057-0.2630.194-5.864-0.35-0.52
1114I_DA115:DT178_J0.257-0.556-1.53310.55721.229-24.764
1123I_DA124:DT169_J0.130.0220.15623.166-27.322-1.976
1125I_DA126:DT167_J-0.152-0.027-0.839-22.056-14.272-1.64
1126I_DA127:DT166_J0.1740.036-0.355-11.185-17.135-0.611
1132I_DA133:DT160_J0.2550.0530.21912.733-2.61-4.633
1138I_DA139:DT154_J0.002-0.1680.372-4.103-18.113-11.899
1140I_DA141:DT152_J0.003-0.14-0.991-10.076-16.1992.799
1144I_DA145:DT148_J0.3320.084-0.532-17.0549.266-12.531
13I_DC3:DG290_J0.055-0.134-1.167.94-1.9582.222
19I_DC9:DG284_J0.005-0.092-0.377-3.822-15.992.285
110I_DC10:DG283_J0.256-0.279-0.9026.289-19.6563.237
112I_DC12:DG281_J-0.179-0.257-1.0127.7380.014-7.932
113I_DC13:DG280_J0.10.1480.59-24.508-1.5290.312
116I_DC16:DG277_J0.38-0.015-0.28316.788-12.46-1.637
121I_DC22:DG271_J0.147-0.0270.147-22.16-16.4231.241
124I_DC25:DG268_J-0.097-0.011.367-30.1643.905-5.437
125I_DC26:DG267_J0.134-0.1490.794-11.938-1.735-3.373
143I_DC44:DG249_J-0.026-0.142-0.504-20.593-3.6593.219
146I_DC47:DG246_J-0.125-0.1540.767-11.351-31.723-6.558
148I_DC49:DG244_J-0.0930.119-0.1392.713-4.2180.533
149I_DC50:DG243_J0.236-0.18-1.13528.447-28.6495.836
152I_DC53:DG240_J0.017-0.076-0.81411.139-0.282-5.073
159I_DC60:DG233_J0.03-0.010.957-24.327-6.1780.136
165I_DC66:DG227_J-0.122-0.1150.7298.7257.1841.963
168I_DC69:DG224_J0.007-0.1610.62214.984-15.227-6.847
175I_DC76:DG217_J0.178-0.0760.057-4.225-5.489-2.372
178I_DC79:DG214_J0.107-0.1661.088-8.742-16.06-5.147
183I_DC84:DG209_J0.046-0.0850.22811.76914.8356.459
187I_DC88:DG205_J0.046-0.1791.204-10.441-24.62-8.617
188I_DC89:DG204_J0.0610.0691.148-34.9293.557-3.931
1100I_DC101:DG192_J0.3180.033-0.25824.442-25.1184.17
1106I_DC107:DG186_J-0.210.1280.497-27.2089.202-4.26
1107I_DC108:DG185_J0.042-0.061-0.0494.464-25.886-0.376
1113I_DC114:DG179_J0.149-0.041-0.2413.6120.74-0.867
1115I_DC116:DG177_J-0.0680.011-0.3777.578-5.911-1.823
1128I_DC129:DG164_J-0.44-0.0811.319-36.827-18.156-5.838
1131I_DC132:DG161_J-0.114-0.0370.409-4.295-5.445-1.987
115I_DG15:DC278_J-0.3920.071-0.565-13.973-10.9940.547
118I_DG18:DC275_J0.0480.0450.4499.873-9.9380.791
130I_DG31:DC262_J-0.211-0.3071.0860.54410.844.819
132I_DG33:DC260_J-0.055-0.075-0.328-1.936-12.4843.499
138I_DG39:DC254_J-0.241-0.0160.77717.3640.2661.421
139I_DG40:DC253_J0.0650.0540.2079.477-24.962-1.222
145I_DG46:DC247_J-0.2220.115-0.841-35.428-6.7944.2
157I_DG58:DC235_J-0.277-0.1390.6088.44-14.753-0.497
158I_DG59:DC234_J-0.2520.092-0.123-17.253-20.1771.71
162I_DG63:DC230_J0.0490.043-0.15-10.694-6.8281.071
167I_DG68:DC225_J-0.3470.040.89433.5535.8813.66
170I_DG71:DC222_J-0.203-0.3951.69519.95122.20411.335
177I_DG78:DC215_J-0.041-0.08-0.087-8.856-6.470.776
180I_DG81:DC212_J-0.294-0.0650.088-6.46-0.7252.665
186I_DG87:DC206_J-0.044-0.251-0.9930.6862.4991.815
193I_DG94:DC199_J-0.292-0.0180.1537.3818.4412.169
196I_DG97:DC196_J-0.2620.0860.4619.851-13.9992.077
197I_DG98:DC195_J-0.037-0.08-0.41311.381-17.894.747
199I_DG100:DC193_J-0.235-0.0590.41918.39315.4771.112
1102I_DG103:DC190_J-0.2090.1320.459-1.427-3.954-0.652
1120I_DG121:DC172_J-0.093-0.0571.30824.071-2.053-1.371
1121I_DG122:DC171_J0.206-0.0380.56112.517-11.434-2.886
1124I_DG125:DC168_J-0.204-0.32-1.27-18.304-20.7375.569
1130I_DG131:DC162_J-0.1620.006-0.684-15.352-18.8531.848
1133I_DG134:DC159_J-0.039-0.3-1.191-2.447-1.028-2.248
1134I_DG135:DC158_J0.047-0.2330.721-9.3593.2040.613
1136I_DG137:DC156_J-0.0390.067-0.2862.657-7.913-0.835
1137I_DG138:DC155_J-0.275-0.191-1.119-12.396-14.6287.92
1143I_DG144:DC149_J-0.07-0.13-1.802-34.581-0.771-1.196
12I_DT2:DA291_J-0.189-0.084-1.27813.991-6.683-9.123
16I_DT6:DA287_J-0.037-0.015-0.07112.176-0.2581.26
18I_DT8:DA285_J-0.0610.020.45713.793-6.506-4.948
114I_DT14:DA279_J-0.1130.0450.271-18.409-18.681-1.134
120I_DT21:DA272_J-0.2090.192-0.556-19.056-27.542-6.931
122I_DT23:DA270_J-0.1520.1680.296-16.961-14.665-13.375
131I_DT32:DA261_J-0.1820.0530.08714.57116.762-8.336
133I_DT34:DA259_J0.019-0.1030.454-8.593-4.139-1.355
135I_DT36:DA257_J-0.177-0.0740.893-6.724-3.684-1.312
136I_DT37:DA256_J0.078-0.2051.057-1.4599.118-1.303
137I_DT38:DA255_J-0.149-0.150.6690.563-19.604-10.393
144I_DT45:DA248_J-0.2870.19-0.145-26.431-24.256-0.67
147I_DT48:DA245_J-0.149-0.121-0.384-2.847-4.685.14
151I_DT52:DA241_J-0.421-0.035-0.907-0.44614.744-23.305
161I_DT62:DA231_J-0.105-0.0740.28115.605-3.128-0.75
163I_DT64:DA229_J-0.0950.065-0.026-2.548-10.838-2.75
164I_DT65:DA228_J-0.167-0.0450.1318.1090.589-0.576
169I_DT70:DA223_J-0.187-0.0470.177-7.504-1.211-8.406
173I_DT74:DA219_J-0.1270.006-0.46814.13-3.793-2.19
174I_DT75:DA218_J0.006-0.177-0.9612.721-8.1766.206
179I_DT80:DA213_J-0.153-0.060.104-12.8544.515-1.226
185I_DT86:DA207_J0.564-4.0710.82738.021-2.32480.986
189I_DT90:DA203_J-0.12-0.1230.42-4.613-20.52-3.765
190I_DT91:DA202_J-0.1150.0590.081-14.993-13.898-2.195
191I_DT92:DA201_J-0.18-0.169-0.259-19.734-8.4246.357
192I_DT93:DA200_J0.067-0.181-0.388-2.034-1.12-0.937
195I_DT96:DA197_J0.089-0.1680.09214.783-2.9991.202
1103I_DT104:DA189_J-0.076-0.0060.5572.21915.839-3.265
1104I_DT105:DA188_J-0.042-0.0410.681-15.913-11.166-0.205
1105I_DT106:DA187_J-0.083-0.1841.101-21.318-11.638-0.86
1111I_DT112:DA181_J-0.176-0.1560.1399.241-7.1680.273
1116I_DT117:DA176_J-0.1650.031-0.049-7.761-14.201-3.098
1117I_DT118:DA175_J-0.374-0.0750.674-9.488-3.574-6.492
1118I_DT119:DA174_J-0.02-0.044-0.81922.178-34.21.19
1119I_DT120:DA173_J-0.053-0.3050.9082.886-10.973-0.295
1122I_DT123:DA170_J0.0170.164-0.89630.944-18.64-6.087
1127I_DT128:DA165_J-0.171-0.1050.893-15.399-9.605-6.278
1129I_DT130:DA163_J-0.3420.0450.061-26.223-32.933-8.121
1135I_DT136:DA157_J-0.137-0.175-0.52912.913-5.0160.671
1139I_DT140:DA153_J-0.2240.0020.11-3.1472.318-3.995
1141I_DT142:DA151_J-0.229-0.124-0.885-5.606-20.398-2.508
1142I_DT143:DA150_J0.018-0.088-0.2920.613-13.6311.688

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.