A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: NA1149  PDB ID: 3AZN 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11I_DA1:DT292_J0.077-0.155-0.643-16.13317.2990.941
14I_DA4:DT289_J0.0680.041-0.0194.074-12.9732.031
15I_DA5:DT288_J0.1930.0120.5033.194-8.55-0.573
17I_DA7:DT286_J0.123-0.092-0.1331.821-19.2411.43
111I_DA11:DT282_J-0.035-0.178-0.873-7.577-3.078-6.081
117I_DA17:DT276_J0.059-0.3761.30910.496-5.0540.222
119I_DA19:DT274_J0.1030.0910.0283.228-12.778-1.068
124I_DA24:DT269_J0.0630.048-0.072-8.574-9.747-5.162
127I_DA27:DT266_J0.125-0.1310.5187.208-7.035-1.47
128I_DA28:DT265_J0.088-0.239-0.3542.402-6.312.683
129I_DA29:DT264_J0.2060.0310.3645.309-10.538-4.008
130I_DA30:DT263_J0.134-0.054-0.2340.509-16.8532.651
135I_DA35:DT258_J0.192-0.020.124-13.5469.641-3.988
141I_DA41:DT252_J0.145-0.1620.86712.673-9.516-1.421
142I_DA42:DT251_J0.0260.0250.206-2.113-4.518-5.245
143I_DA43:DT250_J0.062-0.1160.1660.58-4.113-0.839
151I_DA51:DT242_J-0.051-0.308-0.969-7.361-18.37610.646
154I_DA54:DT239_J-0.22-0.172-1.017-16.609-14.6228.487
155I_DA55:DT238_J-0.149-0.073-0.1060.755-17.725-1.408
156I_DA56:DT237_J0.0510.119-0.0612.72-26.305-9.729
157I_DA57:DT236_J0.3230.0330.40916.702-28.987-6.594
161I_DA61:DT232_J0.041-0.089-0.43-19.206-8.0913.47
167I_DA67:DT226_J0.167-0.070.236-1.576-31.375-5.579
172I_DA72:DT221_J-0.0210.0290.0511.282-7.1441.507
173I_DA73:DT220_J0.059-0.1680.052-2.58-3.3224.019
177I_DA77:DT216_J0.1820.1250.0667.891-23.025-8.726
182I_DA82:DT211_J0.002-0.1010.4677.189-3.830.521
183I_DA83:DT210_J0.226-0.002-0.2879.112-2.205-1.628
185I_DA85:DT208_J-0.004-0.103-0.031-7.047-8.442.811
195I_DA95:DT198_J0.019-0.029-0.713-11.934-4.9791.505
199I_DA99:DT194_J0.4-0.0750.5244.744-28.755-11.407
1102I_DA102:DT191_J0.013-0.1970.091-8.229-4.749.57
1109I_DA109:DT184_J-0.058-0.0910.3062.308-8.996-4.446
1110I_DA110:DT183_J0.178-0.2160.89612.46-3.9822.814
1111I_DA111:DT182_J0.156-0.1540.60112.697-1.222-0.1
1113I_DA113:DT180_J0.006-0.279-0.6648.942-15.9828.114
1115I_DA115:DT178_J0.048-0.121-0.176-1.74-6.0234.914
1124I_DA124:DT169_J0.1290.104-0.66919.906-23.28-9.725
1126I_DA126:DT167_J0.077-0.211-0.464-20.657-15.4216.259
1127I_DA127:DT166_J0.21-0.1930.563-29.1690.2590.946
1133I_DA133:DT160_J0.1670.013-0.2544.532-12.1461.308
1139I_DA139:DT154_J0.316-0.0440.425.156-5.3880.212
1141I_DA141:DT152_J0.276-0.210.2932.135-11.321-0.919
1145I_DA145:DT148_J0.247-0.293-0.6827.2456.228-3.63
13I_DC3:DG290_J0.08-0.076-1.1312.252-4.670.743
19I_DC9:DG284_J-0.035-0.037-0.468-6.594-15.9085.973
110I_DC10:DG283_J-0.084-0.141-0.469-4.1582.385-2.424
112I_DC12:DG281_J-0.007-0.084-0.7173.675-5.792-3.672
113I_DC13:DG280_J0.087-0.061-0.392-9.224-17.2055.483
116I_DC16:DG277_J0.235-0.3080.8115.079-9.915-4.74
122I_DC22:DG271_J0.0910.00.68-23.206-8.958-0.437
125I_DC25:DG268_J-0.008-0.1581.123-14.658-3.143-0.694
126I_DC26:DG267_J0.117-0.0310.36310.035-4.9320.309
144I_DC44:DG249_J0.145-0.0680.588-3.508-2.5962.26
147I_DC47:DG246_J0.050.071-0.01614.328-13.912.042
149I_DC49:DG244_J0.004-0.074-0.2121.638-20.4520.895
150I_DC50:DG243_J0.06-0.03-0.1186.61-14.305-0.05
153I_DC53:DG240_J0.172-0.235-0.939-0.925-20.10610.202
160I_DC60:DG233_J0.021-0.024-0.363-13.204-1.2781.879
166I_DC66:DG227_J0.009-0.012-0.4913.29-1.5-1.039
169I_DC69:DG224_J0.0350.0390.57-6.408-7.157-2.53
176I_DC76:DG217_J0.233-0.0160.0151.37-6.6320.481
179I_DC79:DG214_J0.021-0.1540.526-6.107-25.645-3.876
184I_DC84:DG209_J0.168-0.135-0.8089.282-2.082.248
188I_DC88:DG205_J-0.064-0.1290.7194.123-31.38-7.245
189I_DC89:DG204_J0.003-0.1880.817-14.6853.358-0.541
1101I_DC101:DG192_J0.054-0.040.56510.384-14.99-2.054
1107I_DC107:DG186_J0.321-0.201-1.36116.912-9.4495.238
1108I_DC108:DG185_J-0.065-0.0750.8173.343-8.9-5.199
1114I_DC114:DG179_J0.264-0.631-1.86823.633-18.8277.907
1116I_DC116:DG177_J0.147-0.015-0.38416.836-18.7020.147
1129I_DC129:DG164_J-0.13-0.3391.849-20.699-6.41-2.417
1132I_DC132:DG161_J-0.085-0.076-0.2970.866-19.2290.562
115I_DG15:DC278_J-0.26-0.0290.2121.526-5.165-0.685
118I_DG18:DC275_J-0.16-0.1371.2820.075-0.3515.124
131I_DG31:DC262_J-0.155-0.2030.507-15.32416.9396.501
133I_DG33:DC260_J-0.198-0.173-0.7454.657-12.4145.437
139I_DG39:DC254_J-0.0480.060.1567.11611.323-0.965
140I_DG40:DC253_J-0.067-0.0430.7549.119-9.834-0.699
146I_DG46:DC247_J-0.402-0.076-0.0654.285-9.414.094
158I_DG58:DC235_J0.047-0.2681.02712.29-13.092-6.762
159I_DG59:DC234_J-0.0520.039-0.1-4.85-12.356-1.795
163I_DG63:DC230_J-0.083-0.056-0.53-15.376-3.0250.481
168I_DG68:DC225_J-0.221-0.1190.1580.6454.222-1.546
171I_DG71:DC222_J-0.215-0.074-0.271-0.457-7.0395.236
178I_DG78:DC215_J-0.129-0.1180.1336.44416.2740.568
181I_DG81:DC212_J-0.1620.0640.072-0.31.8872.292
187I_DG87:DC206_J-0.195-0.1270.0251.6199.1262.503
194I_DG94:DC199_J-0.042-0.205-0.8552.505-10.1784.814
197I_DG97:DC196_J-0.0610.0810.2110.41-10.791-1.057
198I_DG98:DC195_J-0.077-0.036-0.1242.4494.4271.68
1100I_DG100:DC193_J-0.365-0.1941.19924.96510.4195.81
1103I_DG103:DC190_J-0.020.017-0.174-8.627-10.6871.06
1121I_DG121:DC172_J-0.071-0.1060.132-6.577-24.601-2.319
1122I_DG122:DC171_J-0.055-0.0290.4223.8698.108-7.718
1125I_DG125:DC168_J-0.026-0.238-1.278-8.039-8.60.439
1131I_DG131:DC162_J-0.071-0.151-0.665-14.73-24.494.06
1134I_DG134:DC159_J-0.1-0.1-0.576.261-3.25-0.937
1135I_DG135:DC158_J0.031-0.311-0.6365.625-8.2520.708
1137I_DG137:DC156_J-0.1650.026-0.757-8.361-12.1326.39
1138I_DG138:DC155_J-0.414-0.12-0.169-5.76-8.5176.382
1144I_DG144:DC149_J-0.034-0.025-0.236.171-5.2280.566
12I_DT2:DA291_J-0.072-0.033-0.365-4.175-2.318-4.802
16I_DT6:DA287_J0.15-0.1940.1739.0970.1784.27
18I_DT8:DA285_J-0.015-0.03-0.6359.479-12.6840.915
114I_DT14:DA279_J0.0420.007-0.006-8.384-16.82-2.461
120I_DT20:DA273_J-0.004-0.101-0.6244.808-20.5381.804
121I_DT21:DA272_J0.124-0.239-0.9034.527-24.164.808
123I_DT23:DA270_J-0.074-0.1130.125-15.733-20.412.778
132I_DT32:DA261_J-0.0170.044-0.13711.413-6.508-0.14
134I_DT34:DA259_J0.007-0.238-0.9332.71-11.4596.289
136I_DT36:DA257_J-0.068-0.0610.51-9.536-2.332-0.251
137I_DT37:DA256_J-0.256-0.2631.464-20.124-5.44-2.772
138I_DT38:DA255_J-0.352-0.0480.313-2.802-26.706-8.863
145I_DT45:DA248_J-0.233-0.1140.7120.371-15.113-9.334
148I_DT48:DA245_J-0.120.063-0.4246.237-13.71-9.822
152I_DT52:DA241_J-0.077-0.09-0.659-4.681-6.945-9.412
162I_DT62:DA231_J-0.028-0.032-0.452-3.394-10.199-2.248
164I_DT64:DA229_J-0.026-0.1340.414-5.693-8.1030.426
165I_DT65:DA228_J-0.037-0.034-0.3475.977-12.487-2.112
170I_DT70:DA223_J-0.1190.0180.2580.891-3.733-2.592
174I_DT74:DA219_J-0.095-0.110.028-3.375-8.999-0.702
175I_DT75:DA218_J0.026-0.086-0.172-1.161-13.0973.432
180I_DT80:DA213_J-0.026-0.053-0.253-8.453-4.695-4.886
186I_DT86:DA207_J-0.1890.0130.107-1.611-9.751-2.046
190I_DT90:DA203_J-0.194-0.0010.07-11.38-27.649-2.224
191I_DT91:DA202_J0.0280.114-0.52-2.374-15.522-0.467
192I_DT92:DA201_J0.068-0.105-0.5752.041-4.8384.575
193I_DT93:DA200_J0.047-0.312-0.9133.784-6.7422.329
196I_DT96:DA197_J0.013-0.074-0.2777.636-8.6121.477
1104I_DT104:DA189_J-0.0750.02-0.077-5.661-7.408-1.557
1105I_DT105:DA188_J0.08-0.1660.467-5.967-1.992-0.731
1106I_DT106:DA187_J-0.085-0.035-0.262-1.094-24.7-1.824
1112I_DT112:DA181_J-0.1230.051-0.11510.964-0.012-4.034
1117I_DT117:DA176_J-0.1020.0470.362-1.421-11.33-3.309
1118I_DT118:DA175_J-0.085-0.2630.919-8.606-2.9861.714
1119I_DT119:DA174_J-0.154-0.1940.6810.309-10.333-3.714
1120I_DT120:DA173_J0.176-0.1320.12116.725-10.648-2.519
1123I_DT123:DA170_J-0.079-0.102-1.25333.436-3.364-10.817
1128I_DT128:DA165_J-0.206-0.2751.594-24.686-5.054-2.049
1130I_DT130:DA163_J-0.227-0.1390.132-12.927-15.262-0.622
1136I_DT136:DA157_J0.178-0.3280.04613.717-12.5215.178
1140I_DT140:DA153_J-0.25-0.2180.303-3.531-6.8031.637
1142I_DT142:DA151_J0.002-0.259-0.2521.394-7.4770.228
1143I_DT143:DA150_J-0.089-0.213-0.562.397-3.8280.373

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.