A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 29-Jun-2022 number of released structures: 12153
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NDB ID: PD1046  PDB ID: 3B6F 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11I_DA-73:DT73_J-0.719-0.38-0.4137.469-5.6680.681
14I_DA-70:DT70_J-0.9310.056-0.233-14.365-14.6451.94
15I_DA-69:DT69_J1.090.2130.5512.229-12.094-4.731
19I_DA-63:DT63_J1.4630.224-0.1631.108-27.81-23.162
115I_DA-57:DT57_J1.3110.1210.01810.054-32.7676.969
118I_DA-50:DT50_J-0.415-0.292-0.398-14.326-9.569-10.83
121I_DA-47:DT47_J-0.171-0.4470.5997.357-10.82-4.662
122I_DA-46:DT46_J0.1360.096-1.293-19.728-55.795-2.11
123I_DA-45:DT45_J0.445-0.191-1.296-22.638-31.7680.538
124I_DA-44:DT44_J-0.124-0.120.3897.059-23.73213.375
127I_DA-39:DT39_J0.488-0.1530.48-25.421-7.0168.624
133I_DA-33:DT33_J-3.231-0.415-0.424-7.319-22.167-7.159
134I_DA-32:DT32_J-1.0030.148-0.328-1.673-19.69-17.509
141I_DA-23:DT23_J-0.674-0.3710.752-12.494-1.535-9.159
143I_DA-20:DT20_J-2.011-0.776-2.247-31.976-21.608-1.856
144I_DA-18:DT18_J-1.4810.221-0.56312.534-13.704-16.387
145I_DA-17:DT17_J-0.921-0.293-1.879-5.664-26.347-9.491
149I_DA-13:DT13_J-0.0740.0350.084-8.967-9.2619.236
155I_DA-7:DT7_J-0.177-0.497-0.54-7.334-19.6333.7
161I_DA-1:DT1_J0.2850.3880.188-8.708-11.9746.265
162I_DA0:DT0_J-0.286-0.4660.3580.031-24.1770.222
170I_DA9:DT-9_J1.241-0.2910.65-2.178-5.721-12.714
171I_DA10:DT-10_J0.386-0.395-0.007-8.841-14.552-3.238
173I_DA12:DT-12_J0.362-0.4740.414-5.501-14.469-1.769
183I_DA22:DA-23_J0.3531.23-1.3147.92-23.887-6.071
186I_DA26:DT-26_J1.033-0.1940.595-0.649-26.714-3.531
189I_DA29:DT-29_J0.1440.231-0.427-26.085-12.81818.167
195I_DA36:DT-36_J0.565-0.091-1.585-11.856-9.646-6.912
196I_DA37:DT-37_J-0.528-0.483-0.963-3.548-7.313-7.115
197I_DA38:DT-38_J-1.399-0.180.1442.405-3.671-10.084
198I_DA40:DT-40_J-1.3-0.0920.236-10.462-18.598-2.262
1100I_DA42:DT-42_J-0.388-0.2330.175.185-16.968-6.723
1104I_DA51:DT-51_J-0.438-0.397-0.04613.851-2.655-9.106
1112I_DA66:DT-66_J0.583-0.075-0.097-11.047-3.08717.549
1114I_DA68:DT-68_J0.8810.4240.2175.09-32.4148.586
1117I_DA72:DT-72_J-0.367-0.5581.15918.743-19.27-11.436
13I_DC-71:DG71_J-1.282-0.287-1.0133.176-0.281-1.718
17I_DC-65:DG65_J-0.1782.3211.2649.289-33.53836.807
18I_DC-64:DG64_J-0.619-0.2220.2112.539-28.912-4.118
110I_DC-62:DG62_J1.795-0.2660.697.201-23.9958.704
111I_DC-61:DG61_J0.8020.599-0.02919.328-36.00423.592
114I_DC-58:DG58_J0.174-0.062-1.08614.526-18.7381.658
116I_DC-52:DG52_J-0.877-0.0650.744-15.795-24.43-0.265
119I_DC-49:DG49_J-2.5560.8780.987-1.561-21.69623.765
120I_DC-48:DG48_J0.4520.0821.077-5.89-14.1538.599
135I_DC-30:DG30_J-0.568-0.2320.26524.374-12.207-3.032
138I_DC-27:DG27_J-0.5330.624-1.14922.907-21.68421.904
139I_DC-25:DG25_J1.127-0.292-0.023-18.981-15.519-1.821
140I_DC-24:DG24_J1.195-0.167-0.338-16.099-14.777-16.314
142I_DC-21:DG21_J-0.284-0.182-0.3828.187-33.636-1.654
148I_DC-14:DG14_J-0.795-0.309-0.455-5.768-10.3951.273
154I_DC-8:DG8_J0.221-0.2660.579-22.69-3.434-6.206
157I_DC-5:DG5_J0.996-0.494-0.65312.0974.881.019
164I_DC2:DG-2_J1.101-0.227-0.2193.126-9.4773.029
165I_DC3:DG-3_J0.6160.232-1.51626.771-16.07310.249
167I_DC6:DG-6_J-0.667-0.0280.19511.442-34.966-4.848
172I_DC11:DG-11_J-0.479-0.2240.026-10.563-12.7583.255
176I_DC15:DG-15_J0.08-0.16-0.29614.852-15.515-6.174
177I_DC16:DG-16_J-0.717-0.271-0.92313.454-17.310.701
188I_DC28:DG-28_J0.865-0.574-0.709-2.326-23.419-0.354
194I_DC35:DG-35_J0.742-0.5521.297-2.079-20.297-19.034
199I_DC41:DG-41_J-1.260.132-0.1423.239-14.031-14.622
1106I_DC56:DG-56_J-0.458-0.3981.365-7.026-31.323-3.393
1108I_DC59:DG-59_J0.5140.746-0.03412.557-32.13923.96
113I_DG-59:DC59_J0.409-0.1550.18515.838-6.5380.0
125I_DG-43:DC43_J-0.809-0.5260.194-7.032-20.514-2.649
131I_DG-35:DC35_J0.4830.4880.505-1.322-32.233-14.463
132I_DG-34:DC34_J-0.6910.3450.077-9.66-1.917.066
137I_DG-28:DC28_J-0.474-0.2490.3624.826-30.882.658
146I_DG-16:DC16_J-0.626-0.743-1.448-1.646-19.07210.448
147I_DG-15:DC15_J-0.624-0.484-0.299-4.371-48.076-10.763
151I_DG-11:DC11_J-0.5470.5060.623-7.723-33.43814.536
156I_DG-6:DC6_J-0.507-0.4180.016-2.561-22.318-11.935
159I_DG-3:DC3_J-1.2911.141-1.701-36.749-27.538.7
160I_DG-2:DC2_J-1.234-0.212-0.374-2.577-18.64512.264
166I_DG5:DC-5_J0.5610.1390.19118.2461.20911.602
169I_DG8:DC-8_J0.938-0.1241.062-1.512-1.449-2.766
175I_DG14:DC-14_J-0.616-0.659-0.14610.783-11.1642.612
182I_DG21:DC-21_J1.2460.7380.409-14.646-30.17112.238
184I_DG24:DC-24_J0.7720.2690.34825.773-22.451-9.211
185I_DG25:DC-25_J0.449-0.263-0.1825.465-6.9691.786
187I_DG27:DC-27_J1.2860.523-0.626-7.041-5.1017.482
190I_DG30:DC-30_J-0.7450.502-0.437-27.847-18.687-3.954
1102I_DG49:DC-49_J-1.440.1060.5988.544-14.2627.368
1105I_DG52:DC-52_J-0.768-0.336-0.92610.845-4.53-12.087
1107I_DG58:DC-58_J1.0130.207-0.525-6.34-26.605-6.725
1109I_DG61:DC-61_J1.502-0.0010.531-4.744-20.787-6.093
1110I_DG62:DC-62_J-1.446-0.2990.1591.53-11.092-14.629
1111I_DG64:DC-64_J-0.7420.5040.11713.317-1.1851.044
1116I_DG71:DC-71_J-0.347-0.027-0.035-5.381-7.5145.419
12I_DT-72:DA72_J-1.312-0.195-1.1479.953-7.407-14.955
16I_DT-68:DA68_J-0.904-0.026-0.01512.909-0.946-6.455
112I_DT-60:DA60_J0.0280.275-0.0315.356-20.4283.315
117I_DT-51:DA51_J0.382-0.205-0.048-3.9-14.705-1.102
126I_DT-42:DA42_J-0.996-0.1280.1720.832-12.055-18.956
128I_DT-38:DA38_J0.587-0.3531.382-23.616-13.7610.73
129I_DT-37:DA37_J0.423-0.4440.652-4.47-20.3510.394
130I_DT-36:DA36_J-0.586-0.030.39-3.724-24.5437.895
136I_DT-29:DA29_J-0.304-0.2660.37528.054-7.679-3.017
150I_DT-12:DA12_J-0.505-0.2530.60815.104-26.3692.137
152I_DT-10:DA10_J0.6450.8281.317-13.384-43.85537.44
153I_DT-9:DA9_J-0.2910.0310.697-20.136-27.37615.654
158I_DT-4:DA4_J-0.1060.2341.18-1.386-37.08-0.054
163I_DT1:DA-1_J-0.558-0.1470.089-7.784-10.06-12.654
168I_DT7:DA-7_J-0.2420.272-0.98926.772-13.2932.705
174I_DT13:DA-13_J-0.448-0.407-0.18823.996-8.433-0.719
178I_DT17:DA-17_J-1.285-0.293-0.442-7.11-12.569-6.66
179I_DT18:DA-18_J1.076-0.2960.457-17.764-11.798-1.966
180I_DT19:DA-19_J0.344-0.1470.157-19.761-11.193.793
181I_DT20:DA-20_J0.329-0.150.661-6.863-6.91211.784
191I_DT31:DA-31_J-0.8140.010.852-15.14-16.157-20.644
192I_DT32:DA-32_J-0.710.0210.661-7.909-16.846-5.57
193I_DT33:DG-34_J-1.1280.377-0.632-34.3914.377-26.489
1101I_DT44:DA-44_J-1.267-0.0410.871-2.754-13.053-7.729
1103I_DT50:DA-50_J1.127-0.3240.2510.83-24.3590.649
1113I_DT67:DA-67_J0.0380.037-0.0397.752-22.8358.643
1115I_DT70:DA-70_J0.952-0.092-1.0785.851-25.749-13.657
1118I_DT73:DA-73_J0.108-0.347-0.151-3.28-6.508-6.25

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.