3B6F: Base Pair Morphology Step Parameters

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As of 19-Jan-2022 number of released structures: 11891

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NDB ID: PD1046 PDB ID: 3B6F

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	II_DA-73DT-72:DA72DT73_JJ	-1.953	-1.606	3.325	2.219	-7.198	25.311	-1.482	4.905	3.46	-15.981	-4.928	26.391
1	4	II_DA-70DA-69:DT69DT70_JJ	-0.454	0.135	2.853	-3.519	-2.279	43.257	0.376	0.314	2.869	-3.082	4.761	43.45
1	5	II_DA-69DT-68:DA68DT69_JJ	-0.429	-0.789	3.011	3.575	0.952	25.163	-2.041	1.907	2.892	2.169	-8.15	25.429
1	8	II_DA-63DC-62:DG62DT63_JJ	1.243	-0.923	3.034	-7.761	-1.502	38.546	-1.212	-2.675	2.775	-2.246	11.607	39.318
1	16	II_DA-50DC-49:DG49DT50_JJ	1.879	-0.164	2.889	-0.734	-1.426	20.962	0.076	-5.422	2.827	-3.911	2.015	21.023
1	19	II_DA-47DA-46:DT46DT47_JJ	-0.128	0.571	4.765	12.063	7.136	37.886	-0.359	2.193	4.551	10.559	-17.851	40.306
1	20	II_DA-46DA-45:DT45DT46_JJ	-0.169	1.066	3.225	-5.347	-3.276	34.362	2.261	-0.507	3.104	-5.489	8.957	34.912
1	21	II_DA-45DA-44:DT44DT45_JJ	0.406	0.435	2.232	-15.278	4.7	34.017	0.264	-1.971	1.925	7.538	24.507	37.485
1	22	II_DA-44DG-43:DC43DT44_JJ	-0.918	-0.632	3.414	-3.894	0.753	27.853	-1.488	0.921	3.489	1.555	8.038	28.128
1	24	II_DA-39DT-38:DA38DT39_JJ	-0.893	-0.793	3.319	-3.39	-5.493	31.29	-0.395	0.978	3.48	-10.05	6.203	31.933
1	30	II_DA-33DA-32:DT32DT33_JJ	-0.653	-0.346	3.144	-0.767	0.683	41.522	-0.558	0.842	3.149	0.963	1.081	41.534
1	31	II_DA-32DC-30:DG30DT32_JJ	1.115	-0.321	5.794	-6.661	16.111	62.155	-1.509	-1.547	5.443	15.288	6.32	64.318
1	37	II_DA-23DC-21:DG21DT23_JJ	-1.121	-0.516	5.508	7.804	6.491	56.855	-1.114	1.858	5.244	6.757	-8.125	57.68
1	39	II_DA-20DA-18:DT18DT20_JJ	-0.898	1.873	6.088	-15.521	17.193	51.311	0.017	-0.829	6.385	18.802	16.973	55.973
1	40	II_DA-18DA-17:DT17DT18_JJ	0.246	-0.618	4.525	8.826	10.477	34.824	-2.862	1.214	4.117	16.727	-14.092	37.344
1	41	II_DA-17DG-16:DC16DT17_JJ	1.695	1.717	3.07	0.713	9.897	33.458	1.333	-2.719	3.457	16.74	-1.205	34.858
1	45	II_DA-13DT-12:DA12DT13_JJ	-0.996	-0.231	3.175	-2.477	-5.871	23.87	1.241	1.578	3.224	-13.881	5.855	24.694
1	51	II_DA-7DG-6:DC6DT7_JJ	-1.419	0.691	2.919	-10.522	-2.103	37.352	1.282	0.92	3.149	-3.203	16.028	38.81
1	57	II_DA-1DA0:DT0DT1_JJ	-0.77	0.13	3.006	-7.671	13.777	24.857	-2.608	-0.077	2.81	28.622	15.936	29.37
1	58	II_DA0DT1:DA-1DT0_JJ	-0.999	-1.307	3.331	1.385	2.723	38.903	-2.285	1.662	3.2	4.081	-2.075	39.019
1	65	II_DA9DA10:DT-10DT-9_JJ	0.721	-0.885	3.538	3.873	3.655	27.807	-2.725	-0.506	3.462	7.519	-7.966	28.302
1	66	II_DA10DC11:DG-11DT-10_JJ	0.3	-0.171	3.186	0.296	0.553	31.518	-0.415	-0.498	3.185	1.017	-0.545	31.524
1	68	II_DA12DT13:DA-13DT-12_JJ	0.943	-0.923	2.66	11.614	-4.548	26.981	-0.944	0.351	2.924	-9.152	-23.372	29.676
1	78	II_DA22DG24:DC-24DA-23_JJ	-1.365	0.94	4.319	20.682	3.865	54.394	0.708	2.804	3.678	4.062	-21.736	58.031
1	81	II_DA26DG27:DC-27DT-26_JJ	0.887	1.06	3.696	8.687	1.746	32.188	1.505	0.151	3.849	3.077	-15.309	33.354
1	84	II_DA29DG30:DC-30DT-29_JJ	-1.671	-0.274	3.341	-6.341	11.731	19.478	-4.907	1.802	3.077	30.479	16.475	23.568
1	90	II_DA36DA37:DT-37DT-36_JJ	0.072	-0.13	2.953	-6.499	4.107	20.812	-1.735	-2.396	2.729	10.902	17.249	22.172
1	91	II_DA37DA38:DT-38DT-37_JJ	0.427	-0.667	2.944	-11.002	3.043	36.5	-1.356	-1.868	2.649	4.718	17.06	38.185
1	92	II_DA38DA40:DT-40DT-38_JJ	-1.063	-0.068	6.955	-6.646	-3.172	71.225	0.172	0.427	7.016	-2.716	5.691	71.555
1	93	II_DA40DC41:DG-41DT-40_JJ	-0.133	-1.256	3.017	6.844	-1.318	31.18	-2.062	1.392	2.97	-2.415	-12.537	31.931
1	95	II_DA42DT44:DA-44DT-42_JJ	-0.072	-1.545	6.783	-1.406	14.773	62.9	-2.726	-0.054	6.32	13.952	1.328	64.452
1	98	II_DA51DG52:DC-52DT-51_JJ	0.398	-0.882	3.504	1.628	2.849	28.407	-2.473	-0.413	3.418	5.781	-3.303	28.592
1	104	II_DA66DT67:DA-67DT-66_JJ	-0.544	-0.052	2.815	1.974	1.72	26.098	-0.51	1.653	2.758	3.797	-4.358	26.227
1	106	II_DA68DT70:DA-70DT-68_JJ	-0.709	-0.982	6.165	5.882	13.109	66.482	-1.807	1.051	5.834	11.815	-5.301	67.842
1	109	II_DA72DT73:DA-73DT-72_JJ	0.831	-2.229	4.037	10.58	1.903	37.721	-3.611	0.35	4.005	2.873	-15.971	39.169
1	3	II_DC-71DA-70:DT70DG71_JJ	0.18	-0.455	3.857	-3.522	9.053	29.843	-2.816	-1.101	3.528	17.021	6.622	31.35
1	6	II_DC-65DC-64:DG64DG65_JJ	-1.323	0.396	2.75	0.622	6.902	30.379	-0.383	2.566	2.745	12.96	-1.168	31.142
1	7	II_DC-64DA-63:DT63DG64_JJ	-1.325	-0.181	3.86	-4.4	12.555	35.232	-2.242	1.369	3.717	19.888	6.97	37.585
1	9	II_DC-62DC-61:DG61DG62_JJ	1.06	0.57	2.617	15.99	4.257	28.566	0.352	0.584	2.854	7.85	-29.488	32.926
1	10	II_DC-61DT-60:DA60DG61_JJ	-1.671	0.255	3.281	-3.275	14.941	29.529	-2.195	2.347	3.202	27.14	5.949	33.177
1	13	II_DC-58DA-57:DT57DG58_JJ	1.007	3.475	3.53	0.716	-10.375	54.742	4.319	-1.037	2.891	-11.17	-0.771	55.646
1	14	II_DC-52DT-51:DA51DG52_JJ	-0.201	-0.415	2.808	8.499	5.153	34.43	-1.301	1.359	2.6	8.489	-14.001	35.794
1	17	II_DC-49DC-48:DG48DG49_JJ	0.412	1.083	3.314	-0.073	10.789	44.272	0.4	-0.54	3.472	14.069	0.095	45.503
1	18	II_DC-48DA-47:DT47DG48_JJ	-0.979	2.358	3.082	-0.039	-10.542	41.371	4.153	1.344	2.438	-14.637	0.055	42.635
1	32	II_DC-30DT-29:DA29DG30_JJ	-0.003	-0.509	3.389	2.314	10.685	30.965	-2.763	0.408	3.043	19.275	-4.174	32.794
1	35	II_DC-25DC-24:DG24DG25_JJ	-1.959	-0.064	3.347	-6.136	6.576	32.084	-1.294	2.316	3.568	11.616	10.839	33.289
1	36	II_DC-24DA-23:DT23DG24_JJ	0.964	-0.071	2.888	-7.792	3.833	37.323	-0.519	-2.304	2.622	5.892	11.978	38.285
1	38	II_DC-21DA-20:DT20DG21_JJ	-0.335	-0.406	4.712	3.709	29.74	24.889	-5.736	1.143	2.721	50.77	-6.331	38.774
1	44	II_DC-14DA-13:DT13DG14_JJ	0.131	0.429	3.662	-9.553	7.458	39.961	-0.285	-1.322	3.561	10.621	13.604	41.686
1	50	II_DC-8DA-7:DT7DG8_JJ	0.716	0.905	3.27	7.467	-1.505	34.551	1.717	-0.058	3.307	-2.497	-12.386	35.356
1	53	II_DC-5DT-4:DA4DG5_JJ	-0.634	1.88	4.05	-9.895	-15.589	34.828	4.941	-0.419	3.037	-24.068	15.277	39.285
1	60	II_DC2DC3:DG-3DG-2_JJ	0.656	0.604	2.67	12.077	2.018	29.643	0.781	0.693	2.756	3.749	-22.438	32.02
1	62	II_DC6DT7:DA-7DG-6_JJ	1.646	2.217	2.894	9.403	-11.612	47.813	3.348	-1.362	2.584	-13.936	-11.285	49.962
1	67	II_DC11DA12:DT-12DG-11_JJ	-0.179	0.434	3.344	-2.054	5.737	33.524	-0.205	-0.033	3.375	9.846	3.526	34.058
1	71	II_DC15DC16:DG-16DG-15_JJ	1.12	2.104	3.143	9.869	-2.434	38.07	3.409	-0.509	3.19	-3.652	-14.81	39.355
1	72	II_DC16DT17:DA-17DG-16_JJ	-0.291	0.919	4.2	-7.273	-4.611	38.427	2.065	-0.67	4.054	-6.9	10.884	39.345
1	83	II_DC28DA29:DT-29DG-28_JJ	1.414	1.04	3.723	3.561	11.564	41.443	0.048	-1.504	3.965	15.936	-4.908	43.099
1	89	II_DC35DA36:DT-36DG-35_JJ	0.355	1.702	3.853	18.092	-11.547	50.935	2.636	0.857	3.364	-12.796	-20.05	54.993
1	94	II_DC41DA42:DT-42DG-41_JJ	1.165	0.36	3.384	-1.508	16.674	35.666	-1.564	-1.923	3.188	25.56	2.311	39.284
1	99	II_DC56DG58:DC-58DG-56_JJ	-1.53	2.019	6.534	10.996	-8.599	77.956	2.044	1.787	6.097	-6.784	-8.676	79.0
1	12	II_DG-59DC-58:DG58DC59_JJ	-0.099	1.052	3.577	9.862	10.361	28.352	-0.267	2.269	3.515	19.651	-18.704	31.69
1	23	II_DG-43DT-42:DA42DC43_JJ	-1.265	-1.183	3.106	-2.112	3.264	38.359	-2.173	1.67	3.062	4.951	3.204	38.549
1	28	II_DG-35DG-34:DC34DC35_JJ	1.901	0.719	3.839	0.831	9.411	27.377	-1.105	-3.581	3.92	19.174	-1.693	28.932
1	29	II_DG-34DA-33:DT33DC34_JJ	-1.882	0.595	3.25	-8.096	8.042	28.444	-0.62	1.807	3.666	15.596	15.702	30.604
1	34	II_DG-28DC-27:DG27DC28_JJ	1.5	2.256	2.702	15.497	-4.343	38.486	3.581	-0.667	2.819	-6.265	-22.356	41.598
1	42	II_DG-16DG-15:DC15DC16_JJ	-2.087	2.131	3.036	-18.061	-6.601	47.516	2.933	1.161	3.275	-7.829	21.42	51.05
1	43	II_DG-15DC-14:DG14DC15_JJ	0.855	1.644	2.96	1.965	-12.087	41.871	3.201	-0.992	2.452	-16.495	-2.682	43.548
1	47	II_DG-11DT-10:DA10DC11_JJ	0.949	0.173	3.245	2.252	4.738	34.081	-0.448	-1.25	3.292	8.025	-3.814	34.47
1	52	II_DG-6DC-5:DG5DC6_JJ	1.349	0.829	2.876	7.533	2.338	46.94	0.856	-1.117	3.081	2.911	-9.379	47.561
1	55	II_DG-3DG-2:DC2DC3_JJ	-0.632	1.815	2.146	-15.551	11.14	28.42	1.668	-0.91	2.656	20.072	28.019	34.148
1	56	II_DG-2DA-1:DT1DC2_JJ	-0.564	-0.081	3.188	-6.777	1.894	36.654	-0.374	-0.006	3.23	2.978	10.655	37.3
1	61	II_DG5DC6:DG-6DC-5_JJ	-1.232	1.091	3.573	4.251	-1.88	33.049	2.231	2.894	3.328	-3.285	-7.426	33.365
1	64	II_DG8DA9:DT-9DC-8_JJ	-1.299	-0.525	3.437	3.231	4.34	35.576	-1.484	2.574	3.226	7.053	-5.25	35.972
1	70	II_DG14DC15:DG-15DC-14_JJ	-0.565	1.448	3.253	3.371	-7.21	43.65	2.558	1.048	2.94	-9.601	-4.49	44.334
1	77	II_DG21DA22:DA-23DC-21_JJ	0.617	-0.384	4.028	-9.377	-2.703	44.429	-0.206	-1.808	3.844	-3.524	12.226	45.435
1	79	II_DG24DG25:DC-25DC-24_JJ	1.658	0.167	4.298	2.529	4.185	31.177	-0.733	-2.421	4.4	7.727	-4.67	31.549
1	80	II_DG25DA26:DT-26DC-25_JJ	-0.977	0.786	3.454	-6.1	-2.1	42.283	1.304	0.686	3.515	-2.891	8.398	42.75
1	82	II_DG27DC28:DG-28DC-27_JJ	-1.09	0.503	3.292	-5.078	-8.19	36.721	1.836	1.018	3.228	-12.733	7.894	37.922
1	85	II_DG30DT31:DA-31DC-30_JJ	-0.767	-0.135	2.957	-10.392	-1.011	38.326	-0.088	-0.006	3.057	-1.506	15.482	39.671
1	96	II_DG49DT50:DA-50DC-49_JJ	-0.574	-0.453	3.117	0.269	2.156	40.295	-0.887	0.861	3.086	3.127	-0.39	40.351
1	100	II_DG58DC59:DG-59DC-58_JJ	1.902	0.962	2.937	0.835	-3.695	32.825	2.248	-3.219	2.861	-6.511	-1.472	33.037
1	101	II_DG61DG62:DC-62DC-61_JJ	-1.156	-1.849	2.607	-0.727	10.172	28.37	-5.028	2.12	1.875	19.957	1.426	30.112
1	102	II_DG62DG64:DC-64DC-62_JJ	0.529	-1.106	6.6	-0.871	1.215	64.867	-1.133	-0.566	6.574	1.132	0.812	64.883
1	103	II_DG64DA66:DT-66DC-64_JJ	1.404	-0.576	7.286	4.335	20.522	78.587	-1.632	-0.831	7.053	15.942	-3.367	80.898
1	108	II_DG71DA72:DT-72DC-71_JJ	-1.641	-0.136	2.641	-15.711	-10.153	31.534	1.091	0.593	3.013	-16.946	26.223	36.544
1	2	II_DT-72DC-71:DG71DA72_JJ	0.958	-0.199	3.481	-0.821	0.485	42.777	-0.324	-1.399	3.461	0.664	1.125	42.788
1	11	II_DT-60DG-59:DC59DA60_JJ	1.021	1.07	3.467	1.444	-2.551	37.24	2.025	-1.394	3.424	-3.986	-2.257	37.351
1	15	II_DT-51DA-50:DT50DA51_JJ	0.237	-0.613	3.213	3.435	20.77	29.539	-3.739	0.073	2.318	35.603	-5.888	36.136
1	25	II_DT-38DT-37:DA37DA38_JJ	0.221	-0.521	2.527	7.767	-2.359	35.465	-0.576	0.496	2.546	-3.811	-12.549	36.354
1	26	II_DT-37DT-36:DA36DA37_JJ	0.35	-0.169	2.872	3.271	-0.427	28.44	-0.257	-0.053	2.895	-0.866	-6.63	28.627
1	27	II_DT-36DG-35:DC35DA36_JJ	-1.0	2.411	3.474	0.96	-20.855	51.896	3.713	1.123	2.399	-22.809	-1.05	55.667
1	33	II_DT-29DG-28:DC28DA29_JJ	-0.512	0.271	3.563	0.516	3.19	43.885	0.033	0.737	3.568	4.262	-0.689	43.998
1	46	II_DT-12DG-11:DC11DA12_JJ	0.944	1.24	3.673	6.9	4.779	40.647	1.157	-0.475	3.89	6.792	-9.807	41.469
1	48	II_DT-10DT-9:DA9DA10_JJ	-0.712	0.635	3.11	0.844	22.898	30.631	-2.001	1.2	2.875	37.474	-1.381	38.088
1	49	II_DT-9DC-8:DG8DA9_JJ	-0.992	0.083	3.477	-3.603	7.646	34.278	-1.09	1.058	3.497	12.734	6.001	35.275
1	54	II_DT-4DG-3:DC3DA4_JJ	1.439	2.687	4.033	17.717	13.176	36.672	1.737	0.656	4.871	18.981	-25.522	42.609
1	59	II_DT1DC2:DG-2DA-1_JJ	0.758	0.326	2.956	1.902	1.374	37.612	0.342	-0.949	2.999	2.129	-2.946	37.682
1	63	II_DT7DG8:DC-8DA-7_JJ	-0.225	0.294	4.217	-12.285	17.329	42.124	-1.532	-1.065	3.963	22.48	15.937	46.959
1	69	II_DT13DG14:DC-14DA-13_JJ	1.304	0.877	3.758	11.196	5.859	34.306	0.399	-0.168	4.065	9.54	-18.231	36.494
1	73	II_DT17DT18:DA-18DA-17_JJ	0.061	-0.291	3.709	-4.121	7.789	38.195	-1.484	-0.647	3.559	11.713	6.198	39.161
1	74	II_DT18DT19:DA-19DA-18_JJ	0.543	-0.492	3.093	5.533	3.306	30.273	-1.531	0.001	3.072	6.241	-10.447	30.936
1	75	II_DT19DT20:DA-20DA-19_JJ	0.222	0.219	3.402	-7.331	21.668	29.595	-2.726	-1.386	2.803	36.359	12.302	37.248
1	76	II_DT20DG21:DC-21DA-20_JJ	0.05	0.031	3.394	6.891	3.663	34.189	-0.521	0.994	3.326	6.132	-11.536	35.042
1	86	II_DT31DT32:DA-32DA-31_JJ	1.021	-0.667	2.873	4.619	2.808	31.937	-1.638	-1.105	2.92	5.058	-8.32	32.38
1	87	II_DT32DT33:DG-34DA-32_JJ	1.409	-0.412	5.993	-6.209	4.055	50.84	-0.977	-2.395	5.749	4.695	7.188	51.343
1	88	II_DT33DC35:DG-35DG-34_JJ	-1.629	-0.578	3.962	10.505	-11.582	55.575	0.145	2.367	3.67	-12.156	-11.026	57.563
1	97	II_DT50DA51:DT-51DA-50_JJ	-0.433	-0.975	2.789	1.413	19.687	26.202	-4.315	0.954	1.65	37.411	-2.686	32.7
1	105	II_DT67DA68:DT-68DA-67_JJ	-0.523	2.165	3.596	-5.011	-19.772	50.697	3.571	0.267	2.679	-22.094	5.6	54.394
1	107	II_DT70DG71:DC-71DA-70_JJ	2.213	0.339	3.307	4.585	11.65	30.679	-1.53	-3.05	3.489	20.957	-8.248	33.078

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.