A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 9-Oct-2019 number of released structures: 10416
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NDB ID: PD0031  PDB ID: 3BAM 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14C_DA6:DT3_E0.4960.025-0.0119.313-14.711-5.011
18C_DA10:DT3_D0.435-0.0550.0697.0284.014-6.121
16C_DC8:DG1_E0.187-0.166-0.2915.769-5.368-5.166
17C_DC9:DG4_D-0.117-0.0410.09-11.6230.566-4.504
12C_DG4:DC5_E-0.087-0.0650.05714.54-0.503-1.817
13C_DG5:DC4_E-0.397-0.185-0.402-8.093-4.295-1.374
11C_DT3:DA6_E-0.385-0.0570.187-3.3461.274-0.894
15C_DT7:DA2_E-0.7790.142-0.065-0.781-11.439-4.295
19C_DT11:DA2_D0.172-0.294-1.0272.5737.145-4.384

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.