A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 16-Oct-2019 number of released structures: 10422
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NDB ID: PD0031  PDB ID: 3BAM 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
14CC_DA6DT7:DA2DT3_EE0.452-0.8553.520.63.64926.326-2.876-0.8163.3827.961-1.30926.579
18CC_DA10DT11:DA2DT3_DD0.417-0.3763.9786.8314.99823.934-2.6231.4673.79511.598-15.85125.366
16CC_DC8DC9:DG4DG1_DE-0.731-1.734.044-3.692-3.00632.031-2.4280.4824.239-5.416.64532.374
17CC_DC9DA10:DT3DG4_DD0.0120.1062.9051.389-1.96338.6130.3750.1332.895-2.966-2.09838.685
12CC_DG4DG5:DC4DC5_EE1.138-1.4494.2662.119-6.53931.853-1.034-1.5274.53-11.743-3.80632.568
13CC_DG5DA6:DT3DC4_EE-0.792-0.2262.9561.0191.12537.079-0.4911.3662.9261.769-1.60237.109
11CC_DT3DG4:DC5DA6_EE-0.1010.4222.8960.777-0.57839.0210.6930.2342.887-0.865-1.16339.033
15CC_DT7DC8:DG1DA2_EE0.111-0.4673.286-1.148-0.93737.354-0.605-0.3253.292-1.4631.79137.382

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.