A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: PD1068  PDB ID: 3BRF 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11B_DA3:DT15_C0.218-0.2070.0480.451-5.9911.798
19B_DA11:DT7_C0.176-0.1650.0592.511-17.4063.89
110B_DA12:DT6_C0.205-0.082-0.0943.359-17.5945.747
111B_DA13:DT5_C0.091-0.269-0.143.103-16.3761.275
113B_DA15:DT3_C-0.154-0.157-0.06-0.615-9.330.081
12B_DC4:DG14_C0.171-0.3340.0530.257-17.2270.75
14B_DG6:DC12_C-0.271-0.143-0.101-3.23-12.747-0.626
16B_DG8:DC10_C-0.06-0.1380.0110.373-7.132-1.867
17B_DG9:DC9_C-0.017-0.1330.087.517-9.331-1.544
18B_DG10:DC8_C-0.123-0.251-0.2974.566-12.077-2.524
112B_DG14:DC4_C0.002-0.141-0.21-9.576-14.0032.036
13B_DT5:DA13_C-0.358-0.1280.236-5.296-8.154-0.588
15B_DT7:DA11_C0.228-0.0240.155-2.496-10.797-0.214

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.