A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 16-Oct-2019 number of released structures: 10422
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NDB ID: PD1082  PDB ID: 3C29 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
114C_1AP15:DT22_D0.003-0.1760.002-8.399-13.881-1.982
11C_DA2:DT35_D0.301-0.4140.013-1.733-12.4552.611
13C_DA4:DT33_D0.064-0.0470.1297.558-14.5370.533
14C_DA5:DT32_D0.089-0.1430.18214.482-15.3540.494
111C_DA12:DT25_D0.221-0.137-0.122-3.197-7.544-1.177
113C_DA14:DT23_D0.177-0.165-0.276-8.784-2.2590.344
118C_DA19:DT18_D0.142-0.3420.024.133-4.4830.266
123C_DA24:DT13_D-0.026-0.2870.144-8.189-5.4881.147
125C_DA26:DT11_D-0.01-0.169-0.067-13.385-3.2626.72
128C_DA29:DT8_D0.036-0.1750.09.074-14.485.572
129C_DA30:DT7_D0.049-0.2050.1485.249-15.574.497
133C_DA34:DT3_D0.543-0.363-0.476-5.521-5.5812.033
15C_DC6:DG31_D0.415-0.2470.356.418-22.9031.477
18C_DC9:DG28_D0.329-0.224-0.019-5.033-8.0591.445
121C_DC22:DG15_D0.37-0.0710.06-0.089-11.225-0.107
126C_DC27:DG10_D0.279-0.167-0.148-0.041.3470.393
19C_DG10:DC27_D-0.283-0.243-0.135-4.560.2930.943
116C_DG17:DC20_D-0.363-0.1230.0326.093-8.7316.025
120C_DG21:DC16_D-0.211-0.192-0.27-13.948-26.4338.792
127C_DG28:DC9_D-0.439-0.0440.20410.457-12.5893.594
130C_DG31:DC6_D-0.287-0.1590.216-7.698-24.6781.894
12C_DT3:DA34_D-0.23-0.109-0.1631.261-6.3592.228
16C_DT7:DA30_D-0.218-0.2110.208-6.14-15.5594.128
17C_DT8:DA29_D-0.004-0.275-0.273-5.072-12.8142.452
110C_DT11:DA26_D0.024-0.139-0.12811.742-2.2034.913
112C_DT13:DA24_D0.087-0.3080.0945.104-4.3292.645
115C_DT16:DA21_D-0.109-0.10.145-9.211-8.6044.524
117C_DT18:DA19_D-0.213-0.242-0.2156.42-7.8093.656
119C_DT20:DA17_D0.026-0.2410.10312.738-12.1844.205
122C_DT23:DA14_D0.04-0.18-0.1174.021-3.3552.057
124C_DT25:DA12_D-0.027-0.099-0.037-0.887-10.2612.573
131C_DT32:DA5_D-0.274-0.1820.365-17.083-12.955-1.889
132C_DT33:DA4_D0.151-0.387-0.063-2.858-13.058-3.954
134C_DT35:DA2_D-0.249-0.1880.01-3.948-16.1576.047
148E_1AP15:DT22_F0.069-0.2460.241-7.255-13.776-3.07
135E_DA2:DT35_F-0.005-0.4450.042-0.608-14.595-1.275
137E_DA4:DT33_F0.045-0.205-0.0977.702-12.7723.873
138E_DA5:DT32_F0.162-0.0530.33317.337-14.7311.912
145E_DA12:DT25_F-0.186-0.163-0.046-1.881-6.3930.753
147E_DA14:DT23_F0.04-0.096-0.166-8.922-2.1880.883
152E_DA19:DT18_F0.17-0.261-0.1182.328-4.7874.099
157E_DA24:DT13_F0.043-0.135-0.003-9.744-5.8513.191
159E_DA26:DT11_F-0.217-0.154-0.176-16.773-3.2136.885
162E_DA29:DT8_F-0.05-0.1620.029.9-12.9385.186
163E_DA30:DT7_F0.154-0.2040.1533.741-16.9074.321
167E_DA34:DT3_F0.054-0.39-0.423-7.869-6.3481.147
139E_DC6:DG31_F0.232-0.1970.158.9-23.1250.112
142E_DC9:DG28_F0.256-0.1780.039-5.352-10.135-0.215
155E_DC22:DG15_F0.082-0.2230.0232.818-9.271-0.258
160E_DC27:DG10_F0.256-0.2690.029-0.683.522-2.086
143E_DG10:DC27_F-0.311-0.2810.022-3.454-3.593-0.217
150E_DG17:DC20_F-0.463-0.070.1273.663-7.3465.465
154E_DG21:DC16_F-0.688-0.197-0.58-19.51-30.1996.375
161E_DG28:DC9_F-0.329-0.1250.0268.408-8.4613.318
164E_DG31:DC6_F-0.134-0.1750.403-5.742-22.5231.128
136E_DT3:DA34_F-0.288-0.409-0.2212.364-8.9842.907
140E_DT7:DA30_F-0.163-0.250.05-6.085-15.8783.817
141E_DT8:DA29_F-0.024-0.256-0.103-8.361-14.7431.395
144E_DT11:DA26_F0.024-0.139-0.1319.631-2.026.181
146E_DT13:DA24_F0.032-0.2120.1995.274-2.1013.144
149E_DT16:DA21_F-0.112-0.1530.192-8.846-8.9023.915
151E_DT18:DA19_F-0.139-0.154-0.0835.85-7.3823.13
153E_DT20:DA17_F-0.108-0.231-0.06515.012-13.7484.991
156E_DT23:DA14_F-0.047-0.209-0.0715.994-0.5691.44
158E_DT25:DA12_F-0.111-0.167-0.113-1.318-11.5221.617
165E_DT32:DA5_F-0.505-0.0410.562-18.688-13.859-0.209
166E_DT33:DA4_F0.081-0.2580.195-10.916-12.116-1.23
168E_DT35:DA2_F-0.576-0.31-0.062-3.493-9.231-0.328

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.