A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 16-Oct-2019 number of released structures: 10422
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NDB ID: PD1082  PDB ID: 3C29 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
114CC_1AP15DT16:DA21DT22_DD-0.856-0.9223.306-0.8251.40526.181-2.4131.6633.2783.0991.81926.231
11CC_DA2DT3:DA34DT35_DD-0.271-0.5123.2670.724-0.87523.07-0.9720.933.274-2.186-1.80823.098
13CC_DA4DA5:DT32DT33_DD0.7770.2863.1560.1134.27227.6-0.395-1.5833.1668.887-0.23527.922
14CC_DA5DC6:DG31DT32_DD1.009-1.0423.448-1.621-0.54832.661-1.751-2.0873.412-0.9732.8832.704
111CC_DA12DT13:DA24DT25_DD0.607-1.1773.249-1.2090.82731.263-2.336-1.353.1931.5332.24231.296
113CC_DA141AP15:DT22DT23_DD-0.564-0.7943.376-4.1793.2236.229-1.7210.3053.3385.1456.67636.598
118CC_DA19DT20:DA17DT18_DD0.326-1.0773.176-3.333.14528.693-2.803-1.3442.9876.2956.66529.049
123CC_DA24DT25:DA12DT13_DD-0.479-0.7653.2331.1990.04130.868-1.4441.1293.2110.077-2.25230.891
125CC_DA26DC27:DG10DT11_DD-0.080.1023.050.6314.97123.96-1.2040.3733.00511.81-1.524.471
128CC_DA29DA30:DT7DT8_DD0.085-0.1133.257-0.4014.1236.82-0.726-0.1873.2256.4970.63237.044
129CC_DA30DG31:DC6DT7_DD0.047-0.5513.473-4.4659.94738.744-1.98-0.5973.21714.6446.57340.192
133CC_DA34DT35:DA2DT3_DD0.153-1.0443.325-4.372-0.94618.84-2.626-2.6733.253-2.83813.11819.359
15CC_DC6DT7:DA30DG31_DD0.117-0.5993.4615.8546.21637.099-1.7470.63.3029.614-9.05438.035
18CC_DC9DG10:DC27DG28_DD0.2110.9093.3621.193.27738.0540.96-0.1663.435.013-1.8238.207
121CC_DC22DT23:DA14DG15_DD-0.03-1.0773.3671.578-3.24432.802-1.3210.3343.45-5.722-2.78432.995
126CC_DC27DG28:DC9DG10_DD-0.341.0093.187-2.8366.6933.4460.650.1263.33711.4564.85734.204
19CC_DG10DT11:DA26DC27_DD0.1430.2022.9981.4235.00124.45-0.9090.0612.98211.64-3.31324.988
116CC_DG17DT18:DA19DC20_DD-0.261-0.4173.3871.561.64329.584-1.170.8493.3413.212-3.04929.669
120CC_DG21DC22:DG15DC16_DD-2.3250.7865.258-15.71-64.92438.4424.0681.062.63-61.68714.92675.943
127CC_DG28DA29:DT8DC9_DD0.156-0.3663.2541.7013.04732.197-1.1890.0183.215.475-3.05632.381
130CC_DG31DT32:DA5DC6_DD-1.011-1.0663.545-1.739-1.92928.62-1.671.6063.661-3.8933.50828.736
12CC_DT3DA4:DT33DA34_DD-0.1591.7573.1780.718-1.29345.8142.3640.2643.127-1.66-0.92345.836
16CC_DT7DT8:DA29DA30_DD-0.2010.023.1973.2765.48437.314-0.6570.7213.148.494-5.07437.838
17CC_DT8DC9:DG28DA29_DD0.02-0.3073.309-1.7115.0428.306-1.748-0.4243.210.1933.45928.792
110CC_DT11DA12:DT25DA26_DD0.513-0.9333.5791.8126.55337.811-2.297-0.5383.39610.013-2.76938.395
112CC_DT13DA14:DT23DA24_DD-0.801-0.8563.7362.019-7.8536.563-0.1331.5583.785-12.326-3.1737.421
115CC_DT16DG17:DC20DA21_DD-0.2410.8863.0490.08211.50328.118-0.5930.4773.15922.52-0.1630.336
117CC_DT18DA19:DT18DA19_DD0.462-0.4293.393-0.6384.43738.988-1.184-0.7673.3186.6220.95239.235
119CC_DT20DG21:DC16DA17_DD-0.886-1.2123.913-4.0910.60934.736-3.640.7573.48517.2096.63536.495
122CC_DT23DA24:DT13DA14_DD0.266-0.1543.676-2.038-10.24141.1740.964-0.6013.596-14.2872.84342.422
124CC_DT25DA26:DT11DA12_DD0.093-0.4633.491-1.0516.79441.707-1.379-0.2443.3769.4651.46442.245
131CC_DT32DT33:DA4DA5_DD-0.697-0.0632.943.1143.07528.784-0.7231.9912.8286.141-6.21929.108
132CC_DT33DA34:DT3DA4_DD0.4731.3573.3931.4164.14746.1591.352-0.4743.5085.276-1.80246.355
147EE_1AP15DT16:DA21DT22_FF-0.86-1.0143.2960.562.13524.572-3.0192.1833.1775.004-1.31224.67
134EE_DA2DT3:DA34DT35_FF-0.313-0.4563.2181.739-0.89727.165-0.7481.0923.205-1.907-3.69627.234
136EE_DA4DA5:DT32DT33_FF1.0050.3043.091-2.3517.43628.158-0.927-2.4772.9814.9244.71929.197
137EE_DA5DC6:DG31DT32_FF0.811-1.1073.4870.983-1.32130.274-1.83-1.3383.555-2.527-1.8830.317
144EE_DA12DT13:DA24DT25_FF0.51-1.1553.307-2.1060.56431.462-2.23-1.3313.2471.0393.87931.536
146EE_DA141AP15:DT22DT23_FF-0.589-0.8383.362-5.0781.29838.809-1.4120.2493.3811.9437.59939.148
151EE_DA19DT20:DA17DT18_FF0.188-1.133.103-3.2572.41627.347-2.912-1.132.9525.0756.8427.641
156EE_DA24DT25:DA12DT13_FF-0.624-0.7513.21.9191.1830.491-1.651.5523.1252.24-3.64330.573
158EE_DA26DC27:DG10DT11_FF-0.190.2213.001-2.8065.59824.702-0.987-0.3162.9812.8246.42825.472
161EE_DA29DA30:DT7DT8_FF-0.077-0.0043.395-1.8032.68239.428-0.333-0.1063.3873.9672.66839.555
162EE_DA30DG31:DC6DT7_FF0.016-0.5913.369-5.7427.66338.513-1.779-0.7053.16411.4038.54539.641
166EE_DA34DT35:DA2DT3_FF0.084-0.4333.179-3.426-2.7326.4-0.244-1.0513.171-5.9257.43726.755
138EE_DC6DT7:DA30DG31_FF-0.011-0.4333.5434.7147.53538.696-1.5810.6063.3811.193-7.00239.665
141EE_DC9DG10:DC27DG28_FF0.4530.8633.3360.2644.12334.9040.792-0.713.4166.843-0.43835.141
154EE_DC22DT23:DA14DG15_FF0.002-1.0743.431.026-3.6232.564-1.2390.1843.524-6.428-1.82232.775
159EE_DC27DG28:DC9DG10_FF-0.3361.093.154-1.0354.56133.6331.1440.4113.2777.8361.77833.947
142EE_DG10DT11:DA26DC27_FF0.280.0333.071.6884.48124.721-1.163-0.1763.0410.341-3.89625.174
149EE_DG17DT18:DA19DC20_FF-0.231-0.3893.3412.2241.38431.682-0.9680.8363.2982.53-4.06531.788
153EE_DG21DC22:DG15DC16_FF-2.3520.95.016-16.889-67.83542.0733.7351.072.542-60.95715.17680.187
160EE_DG28DA29:DT8DC9_FF0.182-0.3873.182-0.3576.35930.261-1.91-0.4083.03712.0140.67430.908
163EE_DG31DT32:DA5DC6_FF-1.001-1.1343.534-0.49-0.90629.77-1.9991.8363.582-1.7620.95429.788
135EE_DT3DA4:DT33DA34_FF0.0632.0133.2232.688-2.5446.3182.760.143.113-3.224-3.41146.457
139EE_DT7DT8:DA29DA30_FF-0.147-0.0433.2531.7371.90438.409-0.30.4373.2372.891-2.63738.493
140EE_DT8DC9:DG28DA29_FF-0.08-0.373.205-0.3265.87728.227-2.0150.0913.06811.8870.65928.822
143EE_DT11DA12:DT25DA26_FF0.239-0.8173.4731.0585.29139.344-1.849-0.2223.3457.814-1.56239.698
145EE_DT13DA14:DT23DA24_FF-0.779-0.8663.6791.786-8.9836.654-0.0031.4713.74-14.012-2.78637.742
148EE_DT16DG17:DC20DA21_FF-0.2160.8763.106-0.4910.327.834-0.4590.323.22220.5410.97729.648
150EE_DT18DA19:DT18DA19_FF0.503-0.1673.4181.1756.07138.478-1.017-0.6063.3679.14-1.76838.953
152EE_DT20DG21:DC16DA17_FF-0.988-1.1024.092-4.34414.81132.913-4.2730.8533.40224.5327.19436.261
155EE_DT23DA24:DT13DA14_FF0.38-0.1693.7490.362-10.56942.3850.945-0.4723.689-14.352-0.49243.625
157EE_DT25DA26:DT11DA12_FF0.099-0.5273.591-1.0878.99840.516-1.781-0.2653.412.81.54641.476
164EE_DT32DT33:DA4DA5_FF-0.810.0113.11.3024.01929.23-0.7841.8493.0367.912-2.56329.527
165EE_DT33DA34:DT3DA4_FF0.2561.5733.3081.3140.6741.9162.127-0.2183.3380.936-1.83641.941

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.