A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 1-Apr-2020 number of released structures: 10687
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NDB ID: PD1080  PDB ID: 3C2I 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
17B_5CM8:DG34_C0.318-0.2830.101-8.53-4.548-3.419
15B_DA6:DT36_C0.266-0.3540.052-4.051-9.789-0.17
16B_DA7:DT35_C-0.077-0.2270.328-5.756-8.833-0.979
110B_DA11:DT31_C0.191-0.163-0.1741.276-19.739-2.191
111B_DA12:DT30_C-0.005-0.3220.060.756-14.1970.447
119B_DA20:DT22_C0.072-0.272-0.009-7.117-8.0993.443
11B_DC2:DG40_C-0.081-0.1840.119-13.134-5.465-1.661
114B_DC15:DG27_C0.131-0.0040.357-10.111-14.1952.413
117B_DC18:DG24_C0.963-0.3340.086-5.821-5.3515.495
13B_DG4:DC38_C-0.436-0.190.1559.161-7.5915.688
14B_DG5:DC37_C-0.7-0.416-0.0176.212-10.6240.412
18B_DG9:5CM33_C-0.111-0.081-0.118-9.472-7.5441.665
19B_DG10:DC32_C-0.436-0.272-0.0053.496-2.4421.278
12B_DT3:DA39_C-0.23-0.3750.051-1.291-3.2891.832
112B_DT13:DA29_C-0.014-0.2870.088-2.221-15.431-2.372
113B_DT14:DA28_C0.163-0.0950.004-1.905-15.0222.355
115B_DT16:DA26_C-0.511-0.2410.167-6.045-10.41-1.264
116B_DT17:DA25_C-0.058-0.502-0.016-5.072-19.431-2.561
118B_DT19:DA23_C-0.1940.0710.331-11.672-20.2547.235

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.