A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
Search for released structures

NDB ID: PD1101  PDB ID: 3COQ 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15D_DA6:DT36_E0.216-0.262-0.0773.851-12.728-7.103
18D_DA9:DT33_E0.279-0.179-0.00710.181-22.41-0.631
110D_DA11:DT31_E0.459-0.0730.003-5.246-22.904-1.029
11D_DC2:DG40_E0.118-0.2780.088-6.676-13.186-1.251
12D_DC3:DG39_E0.752-0.292-0.2760.256-2.014-1.445
19D_DC10:DG32_E-0.199-0.036-0.2766.571-12.399-1.617
113D_DC14:DG28_E0.006-0.1530.063-6.092-9.365-7.515
114D_DC15:DG27_E-0.219-0.340.351-2.362-16.1151.594
116D_DC17:DG25_E-0.087-0.265-0.3651.4281.193-6.249
117D_DC18:DG24_E0.108-0.1090.283-4.87-15.479-5.799
13D_DG4:DC38_E-0.482-0.163-0.0530.953-20.397-2.949
14D_DG5:DC37_E-0.291-0.275-0.0781.3097.383-5.429
16D_DG7:DC35_E-0.267-0.4310.4714.607-13.8125.153
17D_DG8:DC34_E-0.274-0.3150.1825.933-10.187-7.309
111D_DG12:DC30_E-0.065-0.392-0.058-3.966-10.615-1.399
118D_DG19:DC23_E-0.483-0.142-0.0131.968-5.3170.858
119D_DG20:DC22_E-0.169-0.2580.16-0.39-14.406-1.261
112D_DT13:DA29_E-0.291-0.06-0.213-6.668-17.3642.55
115D_DT16:DA26_E-0.176-0.1320.104-7.921-7.970.162

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.