3COQ: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128

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NDB ID: PD1101 PDB ID: 3COQ

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	5	D_DA6:DT36_E	0.216	-0.262	-0.077	3.851	-12.728	-7.103
1	8	D_DA9:DT33_E	0.279	-0.179	-0.007	10.181	-22.41	-0.631
1	10	D_DA11:DT31_E	0.459	-0.073	0.003	-5.246	-22.904	-1.029
1	1	D_DC2:DG40_E	0.118	-0.278	0.088	-6.676	-13.186	-1.251
1	2	D_DC3:DG39_E	0.752	-0.292	-0.276	0.256	-2.014	-1.445
1	9	D_DC10:DG32_E	-0.199	-0.036	-0.276	6.571	-12.399	-1.617
1	13	D_DC14:DG28_E	0.006	-0.153	0.063	-6.092	-9.365	-7.515
1	14	D_DC15:DG27_E	-0.219	-0.34	0.351	-2.362	-16.115	1.594
1	16	D_DC17:DG25_E	-0.087	-0.265	-0.365	1.428	1.193	-6.249
1	17	D_DC18:DG24_E	0.108	-0.109	0.283	-4.87	-15.479	-5.799
1	3	D_DG4:DC38_E	-0.482	-0.163	-0.053	0.953	-20.397	-2.949
1	4	D_DG5:DC37_E	-0.291	-0.275	-0.078	1.309	7.383	-5.429
1	6	D_DG7:DC35_E	-0.267	-0.431	0.471	4.607	-13.812	5.153
1	7	D_DG8:DC34_E	-0.274	-0.315	0.182	5.933	-10.187	-7.309
1	11	D_DG12:DC30_E	-0.065	-0.392	-0.058	-3.966	-10.615	-1.399
1	18	D_DG19:DC23_E	-0.483	-0.142	-0.013	1.968	-5.317	0.858
1	19	D_DG20:DC22_E	-0.169	-0.258	0.16	-0.39	-14.406	-1.261
1	12	D_DT13:DA29_E	-0.291	-0.06	-0.213	-6.668	-17.364	2.55
1	15	D_DT16:DA26_E	-0.176	-0.132	0.104	-7.921	-7.97	0.162

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.