A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 29-Jun-2022 number of released structures: 12153
Search for released structures

NDB ID: PH0049  PDB ID: 3E3J 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
18TT_DA10DC11:G5U6_RR0.045-1.8383.205-0.1656.79333.475-4.128-0.1012.78911.6450.28334.138
116TT_DA23DG24:DC109DT110_NN-0.606-0.7933.134-7.3858.47828.55-3.088-0.2362.85316.4114.29430.641
122TT_DA29DT30:DA103DT104_NN0.737-0.0493.032-3.5953.50636.81-0.506-1.5972.9335.5215.6637.139
12TT_DC2DC3:DG130DG131_NN-0.018-0.3923.356-0.115-3.7235.812-0.0880.0123.378-6.0290.18735.999
13TT_DC3DG4:DC129DG130_NN0.001-0.413.388-0.023-3.82732.685-0.043-0.0053.413-6.7710.0432.902
19TT_DC11DT12:A4G5_RR-0.108-1.8953.2640.1096.77331.072-4.6230.2152.79912.458-0.20131.784
111TT_DC13DC14:G2G3_RR-0.057-1.8283.2430.0956.72332.014-4.3360.1172.81112.025-0.17132.694
112TT_DC14DC15:G1G2_RR-0.055-1.8293.2420.1076.71132.001-4.3370.1152.8112.008-0.19232.679
119TT_DC26DG27:DC106DG107_NN0.9310.4723.206-0.307-3.97334.71.369-1.5973.126-6.6350.51334.921
11TT_DG1DC2:DG131DC132_NN0.0-0.3733.328-0.01-3.73538.958-0.098-0.0013.349-5.5840.01439.13
14TT_DG4DT5:DA128DC129_NN-0.047-0.4173.3420.279-3.68537.498-0.1550.1113.366-5.715-0.43237.674
113TT_DG20DT21:DA112DC113_NN0.419-0.4853.632-2.811-1.73835.437-0.514-1.1393.608-2.8484.60535.586
115TT_DG22DA23:DT110DC111_NN-0.163-0.1983.5322.1691.74837.085-0.5620.5673.5052.743-3.40437.186
117TT_DG24DT25:DA108DC109_NN0.231-0.8843.3194.768.23632.144-2.8750.3753.0114.483-8.3733.486
120TT_DG27DT28:DA105DC106_NN-0.365-0.5272.998-0.3272.05530.789-1.3540.6282.9613.8650.61630.858
15TT_DT5DT6:DA127DA128_NN0.013-0.4223.356-0.015-3.61835.84-0.151-0.0233.381-5.8610.02536.016
16TT_DT8DT9:A7A8_RR-0.799-1.7644.229-9.5244.28421.996-5.934-1.9873.83210.50123.34324.322
17TT_DT9DA10:U6A7_RR0.009-1.8263.2840.0896.77631.537-4.429-0.0022.8412.29-0.16232.239
110TT_DT12DC13:G3A4_RR0.054-1.8033.233-0.0196.7233.008-4.137-0.0972.82111.6770.03433.667
114TT_DT21DG22:DC111DA112_NN-0.8410.6453.0026.46710.0236.863-0.1652.0042.89115.36-9.91338.681
118TT_DT25DC26:DG107DA108_NN0.312-0.7723.5891.5299.85231.522-3.139-0.2723.2217.593-2.7333.023
121TT_DT28DA29:DT104DA105_NN-0.3830.4583.5293.9237.91932.996-0.5881.333.47613.64-6.75734.127
123TT_DT30DT31:DA102DA103_NN-0.7780.0923.1092.52811.48828.439-1.9641.9392.85322.221-4.88930.729
124TT_DT31DA32:DT101DA102_NN-1.340.9983.569-5.8915.47750.4840.7281.0923.7746.3756.85751.079
136XX_DA23DG24:DC109DT110_YY-0.603-0.7933.133-7.3578.5228.55-3.095-0.2352.84916.48814.23730.646
142XX_DA29DT30:DA103DT104_YY0.738-0.0533.034-3.593.51436.776-0.513-1.62.9345.5385.65837.105
126XX_DC2DC3:DG130DG131_YY-0.017-0.3913.358-0.116-3.7435.806-0.0830.013.38-6.0620.18935.995
127XX_DC3DG4:DC129DG130_YY0.0-0.4093.387-0.016-3.78232.674-0.048-0.0033.411-6.6950.02932.886
132XX_DC11DC13:G3G5_ZZ-0.008-2.1916.456.7751.0467.347-2.0460.5186.3940.936-6.09367.654
139XX_DC26DG27:DC106DG107_YY0.9320.4723.206-0.31-3.94834.6551.37-1.6013.126-6.60.51934.874
125XX_DG1DC2:DG131DC132_YY0.0-0.3733.328-0.007-3.67638.95-0.1060.03.348-5.4980.0139.116
128XX_DG4DT5:DA128DC129_YY-0.048-0.4173.3440.216-3.70537.512-0.1520.1033.368-5.744-0.33437.688
133XX_DG20DT21:DA112DC113_YY0.581-0.4433.261-7.642.48133.05-1.144-2.1833.0154.28313.18933.985
135XX_DG22DA23:DT110DC111_YY-0.162-0.1993.5332.1421.71637.067-0.5580.5613.5062.694-3.36437.165
137XX_DG24DT25:DA108DC109_YY0.232-0.8853.3164.768.1932.141-2.870.3723.00914.407-8.37233.472
140XX_DG27DT28:DA105DC106_YY-0.365-0.5323.002-0.3812.06930.774-1.3670.6182.9653.8920.71630.844
129XX_DT5DT6:DA127DA128_YY0.012-0.4223.3540.023-3.64535.828-0.147-0.0173.379-5.906-0.03836.007
130XX_DT6DT7:DA126DA127_YY-0.958-0.3073.2862.8920.87328.228-0.8242.6123.1641.783-5.90928.386
131XX_DT8DT9:A7A8_ZZ0.654-1.5683.49613.43314.56228.117-4.9731.0252.47926.25-24.21534.28
134XX_DT21DG22:DC111DA112_YY-0.8420.6423.0016.52510.00636.868-0.1662.0122.88815.335-10.038.691
138XX_DT25DC26:DG107DA108_YY0.317-0.773.591.589.84531.55-3.131-0.2713.22217.566-2.81933.05
141XX_DT28DA29:DT104DA105_YY-0.3820.4563.5253.9537.87233.074-0.5781.3283.47213.531-6.79434.195
143XX_DT30DT31:DA102DA103_YY-0.7750.0943.1082.55611.44528.462-1.951.9382.85422.128-4.94330.737
144XX_DT31DA32:DT101DA102_YY-1.3431.0033.571-5.8175.59950.4490.7241.1023.7776.5216.77451.049

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.