A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077
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NDB ID: PD1182  PDB ID: 3ECP 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12B_DA2:DT19_C0.110.260.1419.179-12.58-0.962
110B_DA10:DT11_C0.062-0.394-0.253-5.635-14.5354.834
112B_DA12:DT9_C0.013-0.109-0.356-6.4860.11.264
113B_DA13:DT8_C0.357-0.157-0.03814.537-5.7187.142
115B_DA15:DT6_C0.0930.02-0.001-12.212-4.8642.364
13B_DC3:DG18_C-0.155-0.094-0.2722.475-24.389-2.711
118B_DC18:DG3_C0.104-0.137-0.32422.973-8.3591.486
11B_DG1:DC20_C-1.4160.15-0.029-0.257-8.59517.725
16B_DG6:DC15_C-0.606-0.161-0.059-12.499-8.271-0.616
18B_DG8:DC13_C-0.858-0.110.134-7.246-11.1046.255
114B_DG14:DC7_C-0.336-0.3940.1671.432-11.341-0.887
116B_DG16:DC5_C0.073-0.0850.259-7.576-11.0620.998
14B_DT4:DA17_C-1.085-0.0950.47-15.297-5.407-6.761
15B_DT5:DA16_C-0.282-0.078-0.1162.236-16.765-0.591
17B_DT7:DA14_C-0.645-0.2020.362-14.567-11.571-2.056
19B_DT9:DA12_C-0.107-0.452-0.218-0.949-8.0314.458
111B_DT11:DA10_C-0.405-0.1160.362-0.032-7.21210.537
117B_DT17:DA4_C-0.043-0.2790.094-1.659-2.31-6.435

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.