3ECP: Base Pair Morphology Step Parameters

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NDB ID: PD1182 PDB ID: 3ECP

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	2	BB_DA2DC3:DG18DT19_CC	0.699	-0.673	2.953	3.183	-2.675	27.018	-0.81	-0.748	3.065	-5.684	-6.762	27.33
1	10	BB_DA10DT11:DA10DT11_CC	0.338	-0.885	3.255	-7.901	4.897	31.184	-2.407	-1.937	2.916	8.866	14.304	32.507
1	12	BB_DA12DA13:DT8DT9_CC	0.488	-0.596	2.883	0.267	-2.455	31.157	-0.692	-0.861	2.925	-4.561	-0.496	31.252
1	13	BB_DA13DG14:DC7DT8_CC	-1.122	-0.554	3.596	-6.305	0.217	35.01	-0.943	0.799	3.732	0.358	10.377	35.556
1	15	BB_DA15DG16:DC5DT6_CC	0.319	-0.443	3.225	-5.004	5.237	37.306	-1.33	-1.109	3.071	8.094	7.733	37.979
1	3	BB_DC3DT4:DA17DG18_CC	0.205	-1.377	4.38	-2.321	-1.573	33.766	-2.022	-0.854	4.414	-2.702	3.987	33.879
1	1	BB_DG1DA2:DT19DC20_CC	-1.334	0.161	3.091	-3.91	2.487	46.489	0.003	1.368	3.191	3.141	4.939	46.707
1	6	BB_DG6DT7:DA14DC15_CC	-1.078	-0.818	3.321	-4.77	3.065	28.49	-2.325	1.07	3.349	6.151	9.573	29.037
1	8	BB_DG8DT9:DA12DC13_CC	0.307	-0.232	3.164	1.613	3.129	34.897	-0.839	-0.276	3.143	5.201	-2.681	35.069
1	14	BB_DG14DA15:DT6DC7_CC	0.173	-0.639	3.594	3.42	-2.329	40.767	-0.631	0.166	3.626	-3.333	-4.895	40.968
1	16	BB_DG16DT17:DA4DC5_CC	-1.059	-0.871	3.208	1.243	-0.087	23.704	-2.09	2.975	3.152	-0.213	-3.023	23.736
1	4	BB_DT4DT5:DA16DA17_CC	0.132	-0.619	2.717	5.961	-4.357	36.813	-0.481	0.454	2.757	-6.815	-9.323	37.521
1	5	BB_DT5DG6:DC15DA16_CC	-0.221	-0.242	3.484	-4.149	9.706	41.463	-1.365	-0.138	3.353	13.448	5.749	42.728
1	7	BB_DT7DG8:DC13DA14_CC	0.185	0.532	3.182	-2.886	5.704	29.933	-0.104	-0.914	3.195	10.887	5.509	30.592
1	9	BB_DT9DA10:DT11DA12_CC	0.692	-0.343	3.412	2.504	20.379	32.464	-3.164	-0.731	2.777	32.695	-4.017	38.264
1	11	BB_DT11DA12:DT9DA10_CC	-0.43	-1.409	3.38	6.383	2.206	26.696	-3.503	2.47	3.072	4.684	-13.551	27.522
1	17	BB_DT17DC18:DG3DA4_CC	0.088	0.124	2.862	0.306	6.156	29.269	-0.882	-0.115	2.829	12.015	-0.597	29.897

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.