A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 17-Aug-2022 number of released structures: 12237
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NDB ID: PD1201  PDB ID: 3F2C 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12P_DA6:DT17_T0.011-0.178-0.067.769-10.285-4.965
14P_DA8:DT15_T0.0630.0530.78711.513-9.976-0.509
110P_DA14:DT9_T0.1120.07-0.2971.887-6.551-3.673
111P_DA15:DT8_T0.226-0.0760.0586.399-15.028-2.201
15P_DC9:DG14_T0.146-0.1570.103-2.428-4.339-2.009
19P_DC13:DG10_T0.107-0.0170.0451.101-9.2863.467
112P_DC16:DG7_T0.223-0.104-0.2935.817-13.743-0.25
113P_DC17:DG6_T0.259-0.1760.197-3.67-4.9231.687
11P_DG5:DC18_T-0.804-0.019-1.431-0.258-1.7930.263
13P_DG7:DC16_T0.4960.0390.1099.813-13.206-12.199
16P_DG10:DC13_T-0.0130.088-0.05-6.584-11.6770.691
17P_DG11:DC12_T0.186-0.0880.249-2.364-11.756-1.739
18P_DG12:DC11_T-0.103-0.14-0.19-4.685-8.541-4.918

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.