A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: PD1205  PDB ID: 3FBD 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13C_DA21:DT16_B0.201-0.0490.23712.294-19.344-2.108
14C_DA22:DT15_B-0.0940.074-0.0964.598-10.728-0.963
19C_DA27:DT10_B-0.147-0.545-0.353-4.203-1.54-2.751
113C_DA31:DT6_B-0.382-0.0090.00811.311-16.547-5.451
114C_DA32:DT5_B0.6760.0820.104-2.537-8.79-3.012
17C_DC25:DG12_B0.1030.023-0.261.202-3.2361.352
111C_DC29:DG8_B-0.8460.196-0.0845.859-6.669-3.656
117C_DC35:DG2_B-0.156-0.0780.108-7.447-10.5984.358
118C_DC36:DG1_B0.571-0.0660.239-6.4417.281.397
11C_DG19:DC18_B0.507-0.076-0.1024.851-3.957-4.87
12C_DG20:DC17_B-0.31-0.003-0.135.138-0.831-0.576
18C_DG26:DC11_B0.018-0.1430.2848.397-12.1036.76
112C_DG30:DC7_B-0.852-0.1770.22613.606-5.1052.568
15C_DT23:DA14_B0.12-0.1450.311.383-10.432-2.104
16C_DT24:DA13_B0.402-0.0290.429-11.023-1.0471.564
110C_DT28:DA9_B0.8330.196-0.455-0.7122.459-24.685
115C_DT33:DA4_B-0.465-0.0680.49-6.808-13.242-3.142
116C_DT34:DA3_B-0.0390.256-0.018-7.901-15.525-6.972
121E_DA3:DT34_F-0.2460.102-0.1564.992-15.184-10.841
122E_DA4:DT33_F0.344-0.119-0.1921.853-14.693-5.152
127E_DA9:DT28_F0.5430.164-0.487-1.923-8.964-9.844
131E_DA13:DT24_F-0.334-0.128-0.0853.559-8.958-2.243
132E_DA14:DT23_F-0.2130.0060.1143.04-12.8012.24
125E_DC7:DG30_F0.257-0.2220.083-9.61-8.3742.28
129E_DC11:DG26_F0.497-0.359-0.267-9.178-7.074-0.123
135E_DC17:DG20_F0.0130.04-0.3830.4862.1596.159
136E_DC18:DG19_F-0.1920.105-0.201-2.4330.695-1.611
119E_DG1:DC36_F-0.383-0.0550.198-5.026-0.9932.157
120E_DG2:DC35_F-0.1970.050.21610.992-6.777-3.417
126E_DG8:DC29_F-0.729-0.330.018-2.506-3.748-0.484
130E_DG12:DC25_F0.525-0.17-0.2191.793-0.3061.424
123E_DT5:DA32_F-0.503-0.2910.086-1.565-8.791-2.058
124E_DT6:DA31_F0.666-0.318-0.005-6.304-14.6182.368
128E_DT10:DA27_F-0.565-0.407-0.3377.3565.082-4.961
133E_DT15:DA22_F-0.5040.204-0.195-2.484-12.10.669
134E_DT16:DA21_F0.838-0.3070.206-5.996-6.491.333

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.