3GV7: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 23-Nov-2022 number of released structures: 12471

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NDB ID: PD1281 PDB ID: 3GV7

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	5	T_DC845:DG869_P	0.327	-0.156	-0.211	-0.032	-7.839	-4.751
1	6	T_DC846:DG868_P	0.251	-0.141	0.08	-3.282	-6.895	-0.704
1	1	T_DG841:DC873_P	-0.346	-0.251	-0.058	4.883	-3.573	3.854
1	2	T_DG842:DC872_P	-0.184	-0.191	0.008	-3.583	-14.185	-1.77
1	3	T_DG843:DC871_P	-0.104	-0.335	-0.044	-10.911	-14.179	1.801
1	4	T_DT844:DA870_P	-0.068	-0.309	0.087	-8.348	-12.61	-0.192
1	7	T_DT847:DA867_P	-0.067	-0.187	0.007	-4.875	-8.703	-1.576

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.