A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 28-Sep-2022 number of released structures: 12311
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NDB ID: PD1287  PDB ID: 3H4D 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11P_DA867:DT847_T0.1-0.1860.43610.284-0.071-1.772
14P_DA870:DT844_T0.111-0.077-0.25511.9653.013-2.577
15P_DC871:DG843_T-0.078-0.146-0.80318.8441.686-2.268
16P_DC872:DG842_T-0.021-0.177-0.65112.7361.924-3.448
12P_DG868:DC846_T-0.170.0660.0264.8211.150.322
13P_DG869:DC845_T-0.065-0.028-0.485-1.633-0.2610.105
17P_DOC873:DG841_T0.175-0.108-0.5376.235.1960.212

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.