3H4D: Base Pair Morphology Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: PD1287 PDB ID: 3H4D

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	P_DA867:DT847_T	0.1	-0.186	0.436	10.284	-0.071	-1.772
1	4	P_DA870:DT844_T	0.111	-0.077	-0.255	11.965	3.013	-2.577
1	5	P_DC871:DG843_T	-0.078	-0.146	-0.803	18.844	1.686	-2.268
1	6	P_DC872:DG842_T	-0.021	-0.177	-0.651	12.736	1.924	-3.448
1	2	P_DG868:DC846_T	-0.17	0.066	0.026	4.821	1.15	0.322
1	3	P_DG869:DC845_T	-0.065	-0.028	-0.485	-1.633	-0.261	0.105
1	7	P_DOC873:DG841_T	0.175	-0.108	-0.537	6.23	5.196	0.212

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.