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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 25-May-2022 number of released structures: 12098
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NDB ID:
NA0031
PDB ID:
3HOV
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
10
T_BRU23:A6_P
0.083
-0.12
-0.008
0.343
0.425
3.883
1
3
T_DA14:DT3_N
-0.007
-0.07
-0.017
0.137
0.298
-2.837
1
8
T_DC21:G8_P
0.11
-0.106
-0.047
0.8
0.793
-0.597
1
9
T_DC22:G7_P
0.18
-0.056
-0.013
0.523
0.233
-0.242
1
14
T_DC27:G2_P
0.105
-0.079
-0.013
0.068
0.232
0.928
1
1
T_DG12:DC5_N
-0.103
-0.089
-0.008
0.02
-0.194
-1.187
1
4
T_DG15:DC2_N
-0.063
-0.077
-0.006
0.035
0.119
-2.183
1
7
T_DG20:C9_P
-0.197
-0.112
-0.008
0.052
0.261
2.058
1
11
T_DG24:C5_P
-0.116
-0.126
-0.022
-0.073
0.515
-1.977
1
12
T_DG25:C4_P
-0.121
-0.114
-0.017
-0.035
0.017
0.3
1
2
T_DT13:DA4_N
0.069
-0.148
-0.02
-0.251
0.389
-1.78
1
5
T_DT16:DA1_N
-0.008
-0.11
-0.019
0.535
0.208
-0.626
1
6
T_DT19:A10_P
-0.09
-0.149
-0.063
0.371
1.08
0.891
1
13
T_DT26:A3_P
0.029
-0.102
0.007
0.124
-0.35
-1.077
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.