3HOV: Base Pair Morphology Parameters

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As of 25-May-2022 number of released structures: 12098

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NDB ID: NA0031 PDB ID: 3HOV

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	10	T_BRU23:A6_P	0.083	-0.12	-0.008	0.343	0.425	3.883
1	3	T_DA14:DT3_N	-0.007	-0.07	-0.017	0.137	0.298	-2.837
1	8	T_DC21:G8_P	0.11	-0.106	-0.047	0.8	0.793	-0.597
1	9	T_DC22:G7_P	0.18	-0.056	-0.013	0.523	0.233	-0.242
1	14	T_DC27:G2_P	0.105	-0.079	-0.013	0.068	0.232	0.928
1	1	T_DG12:DC5_N	-0.103	-0.089	-0.008	0.02	-0.194	-1.187
1	4	T_DG15:DC2_N	-0.063	-0.077	-0.006	0.035	0.119	-2.183
1	7	T_DG20:C9_P	-0.197	-0.112	-0.008	0.052	0.261	2.058
1	11	T_DG24:C5_P	-0.116	-0.126	-0.022	-0.073	0.515	-1.977
1	12	T_DG25:C4_P	-0.121	-0.114	-0.017	-0.035	0.017	0.3
1	2	T_DT13:DA4_N	0.069	-0.148	-0.02	-0.251	0.389	-1.78
1	5	T_DT16:DA1_N	-0.008	-0.11	-0.019	0.535	0.208	-0.626
1	6	T_DT19:A10_P	-0.09	-0.149	-0.063	0.371	1.08	0.891
1	13	T_DT26:A3_P	0.029	-0.102	0.007	0.124	-0.35	-1.077

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.