A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 1-Dec-2021 number of released structures: 11785
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NDB ID: NA0031  PDB ID: 3HOV 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
19TT_BRU23DG24:C5A6_PP-0.731-1.2813.192-1.6834.33730.292-3.2421.0673.0188.2393.19630.639
13TT_DA14DG15:DC2DT3_NN-1.065-0.9323.424-1.8219.21825.547-4.3231.8032.9820.0023.95127.193
17TT_DC21DC22:G7G8_PP-0.304-1.7893.217-4.7499.94130.297-4.836-0.2222.53618.2788.73132.194
18TT_DC22BRU23:A6G7_PP-0.28-2.0393.609-3.77-5.6128.808-2.605-0.3853.931-11.0847.44929.574
11TT_DG12DT13:DA4DC5_NN1.573-1.3893.4169.7624.81733.519-3.075-1.0243.4978.092-16.39835.194
14TT_DG15DT16:DA1DC2_NN-0.747-1.0893.456-5.3924.24632.565-2.650.3553.3687.4699.48533.261
16TT_DG20DC21:G8C9_PP-0.239-1.5043.754-4.781-4.22731.766-1.815-0.5683.91-7.6268.62632.385
110TT_DG24DG25:C4C5_PP-0.424-1.7043.191-3.60611.73331.621-4.6160.2092.45420.5876.32833.864
111TT_DG25DT26:A3C4_PP-0.309-0.353.498-1.660.32735.098-0.6330.2463.5050.5412.7535.137
12TT_DT13DA14:DT3DA4_NN0.39-0.8813.4275.221.19131.867-1.8050.2723.4122.151-9.42432.302
15TT_DT19DG20:C9A10_PP0.539-0.9993.596-7.38820.60828.976-4.507-1.9072.23435.49512.72436.174
112TT_DT26DC27:G2A3_PP-0.085-1.2683.429-1.2373.55833.72-2.76-0.0583.2836.112.12433.924

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.