A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 4-Dec-2019 number of released structures: 10490
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NDB ID: NA0007  PDB ID: 3HP6 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13B_DA23:DT10_C-0.031-0.1350.2761.27-15.76-1.424
16B_DA26:DT7_C0.087-0.186-0.302-3.4020.683-3.01
11B_DC21:DG12_C0.712-0.295-0.137-8.19-2.473-1.489
15B_DC25:DG8_C0.631-0.266-0.159-4.034-8.54-2.047
17B_DC27:DG6_C0.201-0.146-0.0143.282-14.3311.959
19B_DDG29:DC4_C-0.252-0.1380.1222.981-17.265.841
12B_DG22:DC11_C-0.123-0.1910.1415.418-14.246-0.072
18B_DG28:DC5_C-0.311-0.1250.3525.093-7.1121.327
14B_DT24:DA9_C0.065-0.157-0.094-1.902-15.817-1.135
112E_DA23:DT10_F0.149-0.0880.113-3.877-16.3068.228
115E_DA26:DT7_F0.091-0.036-0.023-7.576-3.0320.675
110E_DC21:DG12_F-1.4980.3970.759-19.651-10.3848.149
114E_DC25:DG8_F0.635-0.1230.029-7.767-14.3542.188
116E_DC27:DG6_F0.232-0.1810.1153.964-12.8111.693
118E_DDG29:DC4_F-0.192-0.1080.0614.655-13.2394.197
111E_DG22:DC11_F0.01-0.2560.0212.841-15.541-0.372
117E_DG28:DC5_F-0.303-0.1610.2366.249-6.4060.888
113E_DT24:DA9_F-0.146-0.108-0.0550.062-17.8710.879

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.