A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 4-Dec-2019 number of released structures: 10490
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NDB ID: NA0007  PDB ID: 3HP6 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
13BB_DA23DT24:DA9DT10_CC-0.514-0.6643.332.6274.15929.022-2.1941.5743.1488.225-5.19529.427
16BB_DA26DC27:DG6DT7_CC0.633-0.6893.315-4.327.95636.788-2.067-1.523.01612.3786.72137.848
11BB_DC21DG22:DC11DG12_CC-0.1481.1143.061-2.8459.90329.3490.191-0.2673.25618.8285.4131.068
15BB_DC25DA26:DT7DG8_CC0.427-0.4443.4323.4899.20528.691-2.778-0.0863.1717.922-6.79330.299
17BB_DC27DG28:DC5DG6_CC-0.196-1.7443.222-1.50212.23522.641-6.8560.0782.03328.6033.5125.741
12BB_DG22DA23:DT10DC11_CC-0.271-0.1313.233-2.7724.41938.362-0.7340.0733.216.6864.19538.702
18BB_DG28DDG29:DC4DC5_CC0.544-1.2973.4893.8095.05731.845-3.249-0.2733.2919.103-6.85832.452
14BB_DT24DC25:DG8DA9_CC0.4920.0233.3380.9892.46436.505-0.309-0.6443.3443.927-1.57736.598
111EE_DA23DT24:DA9DT10_FF-0.558-0.5283.0720.9134.00625.761-2.181.4662.9368.914-2.03126.081
114EE_DA26DC27:DG6DT7_FF0.725-1.0543.143-1.419.14634.292-2.958-1.3792.74915.1722.3435.482
19EE_DC21DG22:DC11DG12_FF-0.7330.9482.9132.7338.43838.9230.4991.3632.9912.466-4.03839.883
113EE_DC25DA26:DT7DG8_FF0.708-0.553.364.5525.55232.382-1.925-0.4533.2899.805-8.03933.148
115EE_DC27DG28:DC5DG6_FF-0.161-1.8463.2540.58811.07622.393-7.1370.5242.11126.531-1.40724.958
110EE_DG22DA23:DT10DC11_FF0.176-0.233.381-2.1012.32239.354-0.622-0.5163.3493.4413.11439.474
116EE_DG28DDG29:DC4DC5_FF0.483-1.3573.4743.175.13632.67-3.268-0.2943.269.035-5.57733.208
112EE_DT24DC25:DG8DA9_FF0.4-0.1243.4850.2112.45937.729-0.529-0.5883.4733.798-0.32537.807

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.