A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-Sep-2019 number of released structures: 10387
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NDB ID: NA0039  PDB ID: 3HQF 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12B_DC-3:DG3_C0.331-0.060.06-4.89-7.778-3.009
13B_DC-2:DG2_C0.002-0.1230.538-12.227-13.618-2.453
14B_DC-1:DG1_C-0.087-0.136-0.003-6.1776.212-1.985
18B_DC3:DG-3_C0.244-0.0520.38-10.356-0.042-0.904
11B_DG-4:DC4_C-0.029-0.199-0.138-0.861-5.518-4.374
16B_DG1:DC-1_C-0.248-0.0840.04318.05214.061-1.742
17B_DG2:DC-2_C-0.199-0.09-0.288-2.807-14.23-1.531
19B_DG4:DC-4_C-0.157-0.0740.0966.981-6.819-0.657
15B_DT0:DA0_C-0.186-0.290.2850.255-5.2333.805

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.